Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004310

Physical Location & Seq

Genomic Coordinates Reverse (-)

37231072 .. 37231785

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTACCAAGGCTCGCAGTCCTATGGTGGTGTCTCGCCGGTGGGGTTCGCCGCGGAGGACCTTATGGCCGAGATTGTGGATGCGCCGAGGTCCGGGGATAGCATGTCGGTCACGATTCGGTTTCGGCCTCTCGGCGAGAGGGAGTATCGAGAGAGGATGAGGTCACTTGAGGTGTATGAGGTAGCCGCCAAACCCGTGGTCAAAGCTACCATGGAAGGTGTCAATGGCACTGTTTTTGCCTATGGTGTGACAAGTAGTGGGAAGACGCACACTATGCATGGAGATCAAAACGCTCCTGGTGTTATACCATTGGCCATAAAAGATGTATTCGTTAGTAAGGGCCAATTTGATTACCATTATGGAAATGATTTAAGAAGAGCTAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031347 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin zf-C3HC4_3

Protein Analysis

129

Amino Acids

14.14

Weight (kDa)

6.3

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	51 - 112	1.3e-19	Kinesin motor domain
Microtub_bd	PF16796	67 - 111	1.5e-07	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21380 AT2G21380 AT4G39050
fragaria_vesca	FvH4_2g10080
malus_domestica	MD05G1058100.v1.1 MD10G1065900.v1.1
prunus_persica	Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1
pyrus_communis	pycom05g04920 pycom10g05130 pycom10g05140
rosa_chinensis	RchiOBHm_Chr6g0267011
rosa_laevigata	RLG00000014051 RLG00000027737 RLG00000037008
rosa_multiflora	Rmu_co8233357.1_g000001 Rmu_sc0013804.1_g000010 Rmu_sc0017071.1_g000008 Rmu_sc0037796.1_g000001 Rmu_sc0041080.1_g000001 Rmu_ssc0000341.1_g000028
rosa_roxburghii	Rroxscaffold_2G00112220 Rroxscaffold_7G00201230
rosa_rugosa	Rorug06G0028400 Rorug06G0028400 Rorug06G0028400
rosa_samantha	Rh1AG191400 Rh1CG176500 Rh6AG150000 Rh6CG146100
rosa_wichuraiana	Rw6G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	53
AciI	CCGC	3 cut(s)	51, 53, 186
AcoI	YGGCCR	2 cut(s)	66, 312
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	206, 380
AluI	AGCT	2 cut(s)	206, 380
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	4 cut(s)	66, 125, 312, 340
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	58, 90, 340
AsuC2I	CCSGG	1 cut(s)	94
AvaII	GGWCC	2 cut(s)	58, 90
BalI	TGGCCA	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	37
BisI	GCNGC	2 cut(s)	51, 186
BlsI	GCNGC	2 cut(s)	52, 187
Bme1390I	CCNGG	2 cut(s)	94, 297
Bme18I	GGWCC	2 cut(s)	58, 90
BmgT120I	GGNCC	3 cut(s)	58, 90, 340
BmrFI	CCNGG	2 cut(s)	94, 297
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	6 cut(s)	7, 51, 86, 93, 195, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	6 cut(s)	7, 51, 86, 93, 195, 210
BseGI	GGATG	2 cut(s)	85, 162
BseLI	CCNNNNNNNGG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	4 cut(s)	68, 127, 314, 342
BsiSI	CCGG	2 cut(s)	38, 93
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	68, 127, 314, 342
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	3 cut(s)	51, 53, 186
BspANI	GGCC	4 cut(s)	68, 127, 314, 342
BspFNI	CGCG	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	6 cut(s)	7, 51, 86, 93, 195, 210
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	2 cut(s)	7, 210
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	381
BstDSI	CCRYGG	3 cut(s)	51, 195, 210
BstF5I	GGATG	2 cut(s)	85, 162
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	92, 295
BstUI	CGCG	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	4 cut(s)	68, 127, 314, 342
BtgI	CCRYGG	3 cut(s)	51, 195, 210
BtsCI	GGATG	2 cut(s)	85, 162
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	58, 90, 340
Cfr42I	CCGCGG	1 cut(s)	54
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	103, 211, 278
CviJI	RGCY	8 cut(s)	12, 68, 127, 185, 206, 314, 342, 380
CviKI_1	RGCY	8 cut(s)	12, 68, 127, 185, 206, 314, 342, 380
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	66, 312
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	7, 210
Eco47I	GGWCC	2 cut(s)	58, 90
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	7, 210
EcoT22I	ATGCAT	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	7, 210
FaeI	CATG	3 cut(s)	106, 214, 281
FatI	CATG	3 cut(s)	102, 210, 277
Fnu4HI	GCNGC	2 cut(s)	51, 186
FokI	GGATG	2 cut(s)	92, 169
Fsp4HI	GCNGC	2 cut(s)	51, 186
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	51, 186
HaeIII	GGCC	4 cut(s)	68, 127, 314, 342
HapII	CCGG	2 cut(s)	38, 93
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	106, 214, 281
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	38, 93
Hpy188III	TCNNGA	2 cut(s)	112, 149
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	106, 214, 281
HspAI	GCGC	1 cut(s)	83
KspI	CCGCGG	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	283
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	4 cut(s)	51, 106, 282, 309
LweI	GCATC	1 cut(s)	70
MaeIII	GTNAC	3 cut(s)	109, 162, 247
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	274, 387
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	1 cut(s)	344
MluNI	TGGCCA	1 cut(s)	314
MnlI	CCTC	8 cut(s)	49, 81, 132, 138, 147, 153, 163, 172
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	38, 93
MspR9I	CCNGG	2 cut(s)	94, 297
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	106, 214, 281
NmeAIII	GCCGAG	3 cut(s)	94, 111, 111
NmuCI	GTSAC	3 cut(s)	109, 162, 247
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	52, 187
PpuMI	RGGWCCY	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	3 cut(s)	58, 90, 340
PspPPI	RGGWCCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacII	CCGCGG	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	2 cut(s)	51, 186
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	3 cut(s)	58, 90, 340
ScrFI	CCNGG	2 cut(s)	94, 297
SetI	ASST	8 cut(s)	63, 92, 164, 174, 183, 208, 220, 382
SfaNI	GCATC	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	54
SgrAI	CRCCGGYG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	54
SinI	GGWCC	2 cut(s)	58, 90
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	3 cut(s)	51, 53, 186
StyD4I	CCNGG	2 cut(s)	92, 295
StyI	CCWWGG	2 cut(s)	7, 210
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	148
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	1 cut(s)	344
TauI	GCSGC	2 cut(s)	53, 188
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	3 cut(s)	109, 162, 247
Tsp45I	GTSAC	3 cut(s)	109, 162, 247
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	58, 90
XceI	RCATGY	1 cut(s)	106
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.