Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8233357.1

Orthogroup ID

OG0004310

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 641

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8233357.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 640 bp

ctggctgaagaagcttcttatgcaaaggaactggcatctgctgctgctgttgagttgaaaaacttggccggtgaagtgacaaaactgtcattacagagtgctaaactggagaaagagttgttggctgctcgtgagctagccaataattctagaagttctaacatgcatcctggtaatggcgtcaaccgcaagtacaatgatggatcaagacctgggaggaaagggaggctttctggtcgtgctaatgatatgctgtctgaggactttgagtcttggaatcttgatcctgatgatttaaggatggaactccaggctaggaaacagcgagaggcagctcttgaggctgctctgtctgaaaaggaatttgtagaggaggaatacaggaaaaaggttgaagatgcaaagaaaagagaagaagctctggaaaatgacttggcaaacatgtgggtcctggtagcaaaattaaagaaagagggtggagctatccctgagacaaccacagaagaaagacacaatgatgccatggaaaccaataatggttttaaagcaaatgacagtgaaagtaatactatccccaaagagagacaagcgttggatgtttcaaaaccagctaatgatgaagttcgcaccgaagaacccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031347 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin zf-C3HC4_3

Protein Analysis

213

Amino Acids

23.79

Weight (kDa)

5.01

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21380 AT2G21380 AT4G39050
fragaria_vesca	FvH4_2g10080
malus_domestica	MD05G1058100.v1.1 MD10G1065900.v1.1
prunus_persica	Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1
pyrus_communis	pycom05g04920 pycom10g05130 pycom10g05140
rosa_chinensis	RchiOBHm_Chr6g0267011
rosa_laevigata	RLG00000014051 RLG00000027737 RLG00000037008
rosa_multiflora	Rmu_co8233357.1_g000001 Rmu_sc0013804.1_g000010 Rmu_sc0017071.1_g000008 Rmu_sc0037796.1_g000001 Rmu_sc0041080.1_g000001 Rmu_ssc0000341.1_g000028
rosa_roxburghii	Rroxscaffold_2G00112220 Rroxscaffold_7G00201230
rosa_rugosa	Rorug06G0028400 Rorug06G0028400 Rorug06G0028400
rosa_samantha	Rh1AG191400 Rh1CG176500 Rh6AG150000 Rh6CG146100
rosa_wichuraiana	Rw6G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	2 cut(s)	211, 278
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	3 cut(s)	58, 395, 603
AhdI	GACNNNNNGTC	1 cut(s)	268
AjnI	CCWGG	4 cut(s)	169, 211, 309, 450
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	6 cut(s)	14, 136, 335, 419, 482, 611
AluI	AGCT	6 cut(s)	14, 136, 335, 419, 482, 611
Alw26I	GTCTC	2 cut(s)	485, 577
AlwI	GGATC	2 cut(s)	211, 278
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	5 cut(s)	41, 44, 125, 332, 344
ApoI	RAATTY	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	83
AsuNHI	GCTAGC	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	448
BauI	CACGAG	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	28, 31, 112, 331, 344
BccI	CCATC	2 cut(s)	194, 295
BciT130I	CCWGG	4 cut(s)	171, 213, 311, 452
BcoDI	GTCTC	2 cut(s)	485, 577
BfaI	CTAG	3 cut(s)	137, 150, 315
BisI	GCNGC	5 cut(s)	42, 45, 126, 333, 345
BlsI	GCNGC	5 cut(s)	43, 46, 127, 334, 346
Bme1390I	CCNGG	4 cut(s)	171, 213, 311, 452
Bme18I	GGWCC	1 cut(s)	448
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	4 cut(s)	171, 213, 311, 452
BmsI	GCATC	4 cut(s)	44, 175, 388, 508
BmtI	GCTAGC	1 cut(s)	140
BpmI	CTGGAG	2 cut(s)	128, 293
BpuEI	CTTGAG	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	212, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	36, 111
BseBI	CCWGG	4 cut(s)	171, 213, 311, 452
BseDI	CCNNGG	2 cut(s)	212, 522
BseGI	GGATG	3 cut(s)	166, 306, 601
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	249, 480
BseNI	ACTGG	2 cut(s)	36, 111
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	5 cut(s)	28, 31, 112, 331, 344
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	485, 577
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	203, 283
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	250, 481
BspLI	GGNNCC	1 cut(s)	449
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	211, 278
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	36, 111
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	212, 522
BssMI	GATC	2 cut(s)	203, 283
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	4 cut(s)	171, 213, 311, 452
Bst4CI	ACNGT	2 cut(s)	87, 557
BstACI	GRCGYC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	258, 489
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	3 cut(s)	166, 306, 601
BstKTI	GATC	2 cut(s)	206, 286
BstMAI	GTCTC	2 cut(s)	485, 577
BstMBI	GATC	2 cut(s)	203, 283
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 41, 186, 341
BstNI	CCWGG	4 cut(s)	171, 213, 311, 452
BstNSI	RCATGY	2 cut(s)	166, 445
BstSCI	CCNGG	4 cut(s)	169, 211, 309, 450
BstV1I	GCAGC	5 cut(s)	28, 31, 112, 331, 344
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	3 cut(s)	166, 306, 601
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	163, 442, 523
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	258, 489
DpnI	GATC	2 cut(s)	205, 285
DpnII	GATC	2 cut(s)	203, 283
DraI	TTTAAA	1 cut(s)	544
DrdI	GACNNNNNNGTC	1 cut(s)	85
DriI	GACNNNNNGTC	1 cut(s)	268
DseDI	GACNNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	4 cut(s)	169, 211, 309, 450
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	3 cut(s)	166, 445, 526
FaiI	YATR	5 cut(s)	21, 164, 251, 443, 524
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	3 cut(s)	162, 441, 522
Fnu4HI	GCNGC	5 cut(s)	42, 45, 126, 333, 345
FokI	GGATG	3 cut(s)	153, 313, 608
Fsp4HI	GCNGC	5 cut(s)	42, 45, 126, 333, 345
FspBI	CTAG	3 cut(s)	137, 150, 315
GluI	GCNGC	5 cut(s)	42, 45, 126, 333, 345
GsuI	CTGGAG	2 cut(s)	128, 293
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	166, 445, 526
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	269, 277
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	259, 355
Hpy188III	TCNNGA	7 cut(s)	131, 150, 207, 281, 287, 338, 422
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	87, 557
HpyCH4V	TGCA	3 cut(s)	23, 166, 401
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 41, 186, 341
HpyF3I	CTNAG	2 cut(s)	258, 489
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	166, 445, 526
Kzo9I	GATC	2 cut(s)	203, 283
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	5 cut(s)	28, 31, 112, 331, 344
LweI	GCATC	4 cut(s)	44, 175, 388, 508
MaeI	CTAG	3 cut(s)	137, 150, 315
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	205, 285
MboI	GATC	2 cut(s)	203, 283
MboII	GAAGA	4 cut(s)	20, 407, 425, 515
MluCI	AATT	3 cut(s)	145, 362, 461
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	8 cut(s)	210, 219, 253, 322, 334, 364, 367, 466
Mph1103I	ATGCAT	1 cut(s)	168
MseI	TTAA	3 cut(s)	296, 464, 543
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	4 cut(s)	171, 213, 311, 452
MvaI	CCWGG	4 cut(s)	171, 213, 311, 452
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 41, 186, 341
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	2 cut(s)	203, 283
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	166, 445, 526
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	2 cut(s)	166, 445
PciI	ACATGT	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	5 cut(s)	43, 46, 127, 334, 346
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	448
PscI	ACATGT	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	4 cut(s)	169, 211, 309, 450
PspGI	CCWGG	4 cut(s)	169, 211, 309, 450
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	296, 464, 543
SatI	GCNGC	5 cut(s)	42, 45, 126, 333, 345
Sau3AI	GATC	2 cut(s)	203, 283
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	4 cut(s)	171, 213, 311, 452
SetI	ASST	8 cut(s)	16, 138, 214, 337, 393, 421, 484, 613
SfaNI	GCATC	4 cut(s)	44, 175, 388, 508
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	145, 362, 461
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	3 cut(s)	137, 150, 315
StyD4I	CCNGG	4 cut(s)	169, 211, 309, 450
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	87, 557
TasI	AATT	3 cut(s)	145, 362, 461
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	3 cut(s)	296, 464, 543
Tru9I	TTAA	3 cut(s)	296, 464, 543
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	5 cut(s)	41, 44, 125, 332, 344
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	633
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	1 cut(s)	362
XbaI	TCTAGA	1 cut(s)	149
XceI	RCATGY	2 cut(s)	166, 445
XspI	CTAG	3 cut(s)	137, 150, 315
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.