Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004310

Physical Location & Seq

Genomic Coordinates Reverse (-)

19090116 .. 19100472

Gene Structure 10357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG146100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3258 bp

ATGGCCTCGTCCTCCAGAGCAAGGAGCAGCTCGCCATTCTCGTACCGCAAGCCTTCAAGTCCCTACTCCTCGACCTCCTCCTCCTCCTCGCTGATCAACGGCCGCGCTCTCATTCCGCGCTCCTGCTCCAGCTCAGCGACGTCGTTTTACAACTCCGGAAGTGGACTCGGTCCCCGATCCGCCACGCCCAGCCGCTCCCGCTCCGAATCAATGTACCAAGGCTCGCGATCCTACGGCGGCGTCTCGCCGGTGGGGTTCGCGGCCGAGGACCTTATGGCCGAGATTGTGGATGCGCCGAGGTCTGGGGATAGCATATCGGTCACGATTCGGTTTCGGCCTCTCAGCGAGAGGGAGTATCAGAGAGGGGATGAGGTCACTTGGTACGCAGATGGTGATAAGATTGTGCGGAATGCGTACAATCCAGTTACAGCCTATGCATTCGATAAAGTTTTTGGACAGGATACGATTTCGCAAGAGGTGTATGAGGTTGCTGCCAAACCTGTCGTCAAAGCTGCCATGGAAGGTGTCAATGGCACTGTTTTTGCCTATGGTGTGACAAGTAGTGGGAAGACGCACACTATGCATGGAGATCAAAACGCTCCAGGTGTTATACCATTGGCCATAAAAGATGTATTCAGTATGATCCAAGATACCCCAGGAAGAGAGTTTTTACTTCGTGTCTCGTATCTTGAGATCTACAATGAGGTGATAAATGACTTGCTTGACCCAACAGGTCAAAATTTGCGTGTTAGAGAAGATTCACAGGGTACATATGTTGAGGGTATAAAAGAAGAAGTTGTTCTGTCTCCTGGGCATGCACTTTCGTTTATTGCTGCTGGAGAAGAGCACCGTCATGTTGGATCAAACAATTATAATTTGTTCAGTAGTAGAAGTCACACCATATTTACACTGATGATTGAAAGTAGTGCCCATGGGGATGAATATGATGGAGTGATCTTCTCTCAACTTAACTTGATTGATCTAGCTGGATCGGAGAGCTCTAAAACTGAAACAACTGGACTAAGAAGAAAGGAAGGATCTTACATTAACAAGAGCCTTTTAACTCTTGGAACTGTAATTGGGAAGCTGAGTGAGGGAAAGGCATCCCATGTTCCATATCGAGATTCTAAGCTCACCCGCCTTTTACAATCTTCGCTAAGTGGGCATGGACATGTTTCGCTCATTTGCACGGTTACTCCTGCATCAAGTAGCATGGAGGAAACCCATAATACATTGAAGTTCGCAAGCAGAGCAAAGCGAGTAGAGATCTACGCATCACGTAATAAGCAGATTATTGATGAAAAGTCTTTAATTAAGAAGTATCAAAGAGAAATTTCAGTCCTTAAAGAAGAGCTTGATCAGCTAAGGAAGGGTATGCTTGTTGGCATCAGTCATGAGGAAATTATCACTTTAAAGCAGAAGTTGGAAGAAGGCCAAGTCAAAATGCAATCAAGATTGGAGGAAGAAGAGGAAGCAAAGGCTGCTCTTATGAGTAGAATCCAGAGGCTGACGAAGCTCATTCTTGTTTCATCAAAAAATACCATACCTGGATGTTTGAGTGATATTCCCACCCACCAACGACGTTATTCTGTTGGTGAGGATGATAAAACGGAAGTAGTGCGAGATGGGTCCTTGCTAGTAGAAAGTGAGAACCAGGACTCACCTTCTTCTCCCTCTGGTGTCCCATCAGATCTGTCTTATGATATTAGACACAAAAGATCTTCCAGCAGGTGGAATGAAGAGCTCTCACCTGCTGGCAGTACAATTACAGAATCAACTCAAGCTGGGGAACTTATCAGTGGTTCGAAACTGACAACAGGAGGGATGACAATGACAGATCATATAGACCTGCTTGTCGAGCAAGTAAAGATGCTTGCTGGAGAGATAGCACTTGGCACCAGCACCTTGAAGCGAATGGTGGAGCAGTCTGTAAATGACCCTGATAGCTCCAAAGTTCAAATTGAGAACTTGGAACGTGATATCCATGAAAAGAGAAGGCAAATGAGGGTTTTAGAACAGCGCATCAATGAAAGTGGTGAGGCTTCAGTCTCTAATGCATCTTTGGTTGAGATGCAGCAGACAGTTAAGAGACTGATGACACAGTGCGATGAGAAGGGGTTTGAGTTGGAAATAAAATCAGCAGACAATCGTATTCTTCAAGAGCAACTGCAAAATAAGTGTGCAGAGAACTTGGAATTGCAAGAAAAAGTGAATCAGTTAGAGCGGCGCCTAGCTTCAGGGTTTTCCGAGCACGGTGTGTCTGAAGAGTATGTTGATGAATTGAGAAAGAAAATCCAGTCTCAGGAGATTGAGAATGAAAGACTAAAAGTGGAGCATGTCCAGTTCTCAGAGGAGAATAGTGGGTTACATGTGCAAAATCAGAAACTGGCTGAAGAAGCTTCTTATGCAAAGGAACTGGCATCTGCTGCTGCTGTTGAGTTGAAAAACTTGGCCGGTGAAGTGACAAAACTGTCATTACAGAGTGCTAAACTGGAGAAAGAGTTGTTGGCTGCTCGTGAGCTAGCCAATAATTCTAGAAGTTCTAACATGCATCCTGGTAATGGCGTCAACCGCAAGTACAATGATGGATCAAGACCTGGGAGGAAAGGGAGGCTTTCTGGTCGTGCTAATGATATGCTGTCTGAGGACTTTGAGTCTTGGAATCTTGATCCTGATGATTTAAGGATGGAACTCCAGGCTAGGAAACAGCGAGAGGCAGCTCTTGAGGCTGCTCTGTCTGAAAAGGAATTTGTAGAGGAGGAATACAGAAAAAAGGTTGAAGATGCAAAGAAAAGAGAAGAAGCTCTGGAAAATGACTTGGCAAACATGTGGGTCCTGGTTGCAAAATTAAAGAAAGAGGGTGGAGCTATCCCTGAGACAACCACAGAAGAAAGACACAATGATGCCATGGAAACCAATAATGGTTTTAAAGCAAATGACAGTGAAAGTAATACTATCCCCAAAGAGAGACAAGCGTTGGATGTTTCAAAACCAGCTAATGATGAAGTTCGCACCGAAGAACCCCTCGTTCTTCGCCTTAAGGCTCGAATGCAAGAGATGAAGGAAAAAGAGCTCAAACACCAGGGAAATGGTGATGCCAATTCCCATCTCTGTAAAGTATGCTTTGAAGCACCAACTGCAGCAATTCTATTGCCTTGCCGACATTTTTGTTTATGTAAATCGTGTTCACTTGCTTGTTCCGAGTGCCCAATTTGTCGTACAAAGATTGCAGATAGGCTTTTTGCATTTACTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031347 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin zf-C3HC4_3

Protein Analysis

1085

Amino Acids

120.44

Weight (kDa)

5.76

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	110 - 421	6.2e-105	Kinesin motor domain
Microtub_bd	PF16796	134 - 241	5.4e-19	Microtubule binding
zf-C3HC4_3	PF13920	1035 - 1077	1.8e-11	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21380 AT2G21380 AT4G39050
fragaria_vesca	FvH4_2g10080
malus_domestica	MD05G1058100.v1.1 MD10G1065900.v1.1
prunus_persica	Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1
pyrus_communis	pycom05g04920 pycom10g05130 pycom10g05140
rosa_chinensis	RchiOBHm_Chr6g0267011
rosa_laevigata	RLG00000014051 RLG00000027737 RLG00000037008
rosa_multiflora	Rmu_co8233357.1_g000001 Rmu_sc0013804.1_g000010 Rmu_sc0017071.1_g000008 Rmu_sc0037796.1_g000001 Rmu_sc0041080.1_g000001 Rmu_ssc0000341.1_g000028
rosa_roxburghii	Rroxscaffold_2G00112220 Rroxscaffold_7G00201230
rosa_rugosa	Rorug06G0028400 Rorug06G0028400 Rorug06G0028400
rosa_samantha	Rh1AG191400 Rh1CG176500 Rh6AG150000 Rh6CG146100
rosa_wichuraiana	Rw6G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AarI	CACCTGC	2 cut(s)	1719, 1759
AasI	GACNNNNNNGTC	2 cut(s)	1853, 2470
AatII	GACGTC	1 cut(s)	143
Acc36I	ACCTGC	3 cut(s)	1719, 1759, 1857
AccB1I	GGYRCC	2 cut(s)	1895, 2226
AccB7I	CCANNNNNTGG	1 cut(s)	1731
AccBSI	CCGCTC	3 cut(s)	195, 201, 2224
AccII	CGCG	4 cut(s)	105, 118, 226, 260
AccIII	TCCGGA	1 cut(s)	155
AclWI	GGATC	8 cut(s)	171, 222, 637, 868, 997, 1045, 2596, 2663
AcoI	YGGCCR	5 cut(s)	100, 261, 276, 618, 2451
AcsI	RAATTY	3 cut(s)	739, 1332, 2747
AcuI	CTGAAG	4 cut(s)	2028, 2220, 2283, 2412
AcyI	GRCGYC	4 cut(s)	140, 240, 2227, 2565
AdeI	CACNNNGTG	1 cut(s)	2257
AfaI	GTAC	8 cut(s)	44, 215, 383, 416, 769, 1762, 2579, 3220
AfiI	CCNNNNNNNGG	5 cut(s)	21, 302, 1731, 2302, 2561
AflII	CTTAAG	1 cut(s)	3038
AflIII	ACRYGT	3 cut(s)	1171, 2368, 2826
AhdI	GACNNNNNGTC	1 cut(s)	2653
AjuI	GAANNNNNNNTTGG	2 cut(s)	2489, 2521
AloI	GAACNNNNNNTCC	2 cut(s)	1965, 1997
Alw21I	GWGCWC	5 cut(s)	849, 1001, 1746, 2253, 3075
Alw26I	GTCTC	8 cut(s)	247, 685, 810, 2053, 2083, 2304, 2870, 2962
AlwI	GGATC	8 cut(s)	171, 222, 637, 868, 997, 1045, 2596, 2663
AlwNI	CAGNNNCTG	2 cut(s)	1507, 2386
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	8 cut(s)	3, 100, 261, 276, 335, 618, 1432, 2451
ApoI	RAATTY	3 cut(s)	739, 1332, 2747
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
Asp700I	GAANNNNTTC	1 cut(s)	798
AspLEI	GCGC	5 cut(s)	107, 120, 295, 2022, 2229
AspS9I	GGNCC	4 cut(s)	170, 268, 1629, 2833
AsuHPI	GGTGA	9 cut(s)	404, 718, 1126, 1607, 1653, 1740, 2048, 2468, 3104
AsuII	TTCGAA	1 cut(s)	1805
AsuNHI	GCTAGC	1 cut(s)	2521
AvaII	GGWCC	4 cut(s)	170, 268, 1629, 2833
BaeGI	GKGCMC	2 cut(s)	931, 3209
BaeI	ACNNNNGTAYC	2 cut(s)	759, 792
BalI	TGGCCA	1 cut(s)	620
BanI	GGYRCC	2 cut(s)	1895, 2226
BanII	GRGCYC	3 cut(s)	1001, 1746, 3075
BauI	CACGAG	1 cut(s)	2514
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	5 cut(s)	849, 1001, 1746, 2253, 3075
BccI	CCATC	7 cut(s)	383, 941, 1619, 1693, 2579, 2680, 3114
BceAI	ACGGC	2 cut(s)	115, 250
BcgI	CGANNNNNNTGC	1 cut(s)	3234
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	2 cut(s)	93, 1357
BcoDI	GTCTC	8 cut(s)	247, 685, 810, 2053, 2083, 2304, 2870, 2962
BfaI	CTAG	6 cut(s)	983, 1637, 2231, 2522, 2535, 2700
BfmI	CTRYAG	1 cut(s)	3138
BfoI	RGCGCY	1 cut(s)	2230
BfrI	CTTAAG	1 cut(s)	3038
BfuAI	ACCTGC	3 cut(s)	1719, 1759, 1857
BfuI	GTATCC	1 cut(s)	454
BglII	AGATCT	4 cut(s)	693, 1266, 1690, 1718
BlpI	GCTNAGC	1 cut(s)	133
Bme18I	GGWCC	4 cut(s)	170, 268, 1629, 2833
BmeRI	GACNNNNNGTC	1 cut(s)	2653
BmgT120I	GGNCC	4 cut(s)	170, 268, 1629, 2833
BmiI	GGNNCC	5 cut(s)	172, 1630, 1897, 2228, 2834
BmtI	GCTAGC	1 cut(s)	2525
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	6 cut(s)	112, 585, 858, 1899, 2513, 2678
Bpu10I	CCTNAGC	1 cut(s)	1364
Bpu1102I	GCTNAGC	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	1805
BpuEI	CTTGAG	3 cut(s)	710, 1764, 2744
BsaAI	YACGTR	1 cut(s)	1280
BsaHI	GRCGYC	4 cut(s)	140, 240, 2227, 2565
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	4 cut(s)	1180, 1210, 2486, 2516
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 302, 1731, 2302, 2561
Bse118I	RCCGGY	2 cut(s)	247, 2453
Bse1I	ACTGG	7 cut(s)	422, 1021, 2296, 2341, 2391, 2421, 2496
BseAI	TCCGGA	1 cut(s)	155
BseLI	CCNNNNNNNGG	5 cut(s)	21, 302, 1731, 2302, 2561
BseMII	CTCAG	7 cut(s)	147, 355, 1079, 2315, 2361, 2634, 2865
BseNI	ACTGG	7 cut(s)	422, 1021, 2296, 2341, 2391, 2421, 2496
BseRI	GAGGAG	7 cut(s)	58, 67, 70, 73, 76, 2366, 2771
BseSI	GKGCMC	2 cut(s)	931, 3209
BseX3I	CGGCCG	2 cut(s)	100, 261
BseYI	CCCAGC	2 cut(s)	188, 1784
BsgI	GTGCAG	1 cut(s)	2202
Bsh1236I	CGCG	4 cut(s)	105, 118, 226, 260
Bsh1285I	CGRYCG	2 cut(s)	103, 264
BshFI	GGCC	8 cut(s)	5, 102, 263, 278, 337, 620, 1434, 2453
BshNI	GGYRCC	2 cut(s)	1895, 2226
BsiEI	CGRYCG	2 cut(s)	103, 264
BsiHKAI	GWGCWC	5 cut(s)	849, 1001, 1746, 2253, 3075
BsiSI	CCGG	3 cut(s)	156, 248, 2454
BslFI	GGGAC	3 cut(s)	45, 156, 1667
BslI	CCNNNNNNNGG	5 cut(s)	21, 302, 1731, 2302, 2561
BsmAI	GTCTC	8 cut(s)	247, 685, 810, 2053, 2083, 2304, 2870, 2962
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	3 cut(s)	45, 156, 1667
BsmI	GAATGC	3 cut(s)	415, 437, 3054
BsnI	GGCC	8 cut(s)	5, 102, 263, 278, 337, 620, 1434, 2453
Bsp119I	TTCGAA	1 cut(s)	1805
Bsp1286I	GDGCHC	7 cut(s)	849, 931, 1001, 1746, 2253, 3075, 3209
Bsp13I	TCCGGA	1 cut(s)	155
Bsp1720I	GCTNAGC	1 cut(s)	133
Bsp19I	CCATGG	3 cut(s)	516, 931, 2907
Bsp68I	TCGCGA	1 cut(s)	226
BspANI	GGCC	8 cut(s)	5, 102, 263, 278, 337, 620, 1434, 2453
BspCNI	CTCAG	7 cut(s)	146, 354, 1080, 2314, 2360, 2635, 2866
BspEI	TCCGGA	1 cut(s)	155
BspFNI	CGCG	4 cut(s)	105, 118, 226, 260
BspHI	TCATGA	1 cut(s)	1393
BspLI	GGNNCC	5 cut(s)	172, 1630, 1897, 2228, 2834
BspMAI	CTGCAG	1 cut(s)	3142
BspMI	ACCTGC	3 cut(s)	1719, 1759, 1857
BspOI	GCTAGC	1 cut(s)	2525
BspPI	GGATC	8 cut(s)	171, 222, 637, 868, 997, 1045, 2596, 2663
BspQI	GCTCTTC	3 cut(s)	837, 1344, 1734
BspT104I	TTCGAA	1 cut(s)	1805
BspT107I	GGYRCC	2 cut(s)	1895, 2226
BspTI	CTTAAG	1 cut(s)	3038
BsrBI	CCGCTC	3 cut(s)	195, 201, 2224
BsrFI	RCCGGY	2 cut(s)	247, 2453
BsrI	ACTGG	7 cut(s)	422, 1021, 2296, 2341, 2391, 2421, 2496
BssAI	RCCGGY	2 cut(s)	247, 2453
BssNI	GRCGYC	4 cut(s)	140, 240, 2227, 2565
BssSI	CACGAG	1 cut(s)	2514
BssT1I	CCWWGG	4 cut(s)	217, 516, 931, 2907
Bst2BI	CACGAG	1 cut(s)	2514
Bst4CI	ACNGT	9 cut(s)	538, 851, 1075, 1192, 2083, 2103, 2255, 2472, 2942
Bst6I	CTCTTC	6 cut(s)	655, 837, 1344, 1461, 1734, 2259
BstACI	GRCGYC	4 cut(s)	140, 240, 2227, 2565
BstAFI	CTTAAG	1 cut(s)	3038
BstAPI	GCANNNNNTGC	4 cut(s)	580, 1481, 2426, 3137
BstBAI	YACGTR	1 cut(s)	1280
BstBI	TTCGAA	1 cut(s)	1805
BstC8I	GCNNGC	8 cut(s)	32, 50, 224, 816, 1246, 1756, 1875, 2523
BstDSI	CCRYGG	3 cut(s)	516, 931, 2907
BstFNI	CGCG	4 cut(s)	105, 118, 226, 260
BstH2I	RGCGCY	1 cut(s)	2230
BstHHI	GCGC	5 cut(s)	107, 120, 295, 2022, 2229
BstMAI	GTCTC	8 cut(s)	247, 685, 810, 2053, 2083, 2304, 2870, 2962
BstMCI	CGRYCG	2 cut(s)	103, 264
BstNSI	RCATGY	6 cut(s)	818, 1175, 2339, 2372, 2551, 2830
BstSFI	CTRYAG	1 cut(s)	3138
BstSLI	GKGCMC	2 cut(s)	931, 3209
BstUI	CGCG	4 cut(s)	105, 118, 226, 260
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	5 cut(s)	693, 1037, 1266, 1690, 1718
BstXI	CCANNNNNNTGG	1 cut(s)	3089
BstYI	RGATCY	5 cut(s)	693, 1037, 1266, 1690, 1718
BstZI	CGGCCG	2 cut(s)	100, 261
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	8 cut(s)	5, 102, 263, 278, 337, 620, 1434, 2453
BtgI	CCRYGG	3 cut(s)	516, 931, 2907
BtgZI	GCGATG	1 cut(s)	2121
BtsIMutI	CAGTG	5 cut(s)	534, 908, 1804, 2108, 2947
BtuMI	TCGCGA	1 cut(s)	226
BveI	ACCTGC	3 cut(s)	1719, 1759, 1857
Cac8I	GCNNGC	8 cut(s)	32, 50, 224, 816, 1246, 1756, 1875, 2523
CaiI	CAGNNNCTG	2 cut(s)	1507, 2386
CciI	TCATGA	1 cut(s)	1393
CfoI	GCGC	5 cut(s)	107, 120, 295, 2022, 2229
Cfr10I	RCCGGY	2 cut(s)	247, 2453
Cfr13I	GGNCC	4 cut(s)	170, 268, 1629, 2833
CseI	GACGC	3 cut(s)	229, 580, 2554
Csp6I	GTAC	8 cut(s)	43, 214, 382, 415, 768, 1761, 2578, 3219
CspCI	CAANNNNNGTGG	2 cut(s)	2014, 2049
CviQI	GTAC	8 cut(s)	43, 214, 382, 415, 768, 1761, 2578, 3219
DinI	GGCGCC	1 cut(s)	2228
DraI	TTTAAA	2 cut(s)	1413, 2929
DraIII	CACNNNGTG	1 cut(s)	2257
DrdI	GACNNNNNNGTC	2 cut(s)	1853, 2470
DriI	GACNNNNNGTC	1 cut(s)	2653
DseDI	GACNNNNNNGTC	2 cut(s)	1853, 2470
EaeI	YGGCCR	5 cut(s)	100, 261, 276, 618, 2451
EagI	CGGCCG	2 cut(s)	100, 261
Eam1104I	CTCTTC	6 cut(s)	655, 837, 1344, 1461, 1734, 2259
Eam1105I	GACNNNNNGTC	1 cut(s)	2653
EarI	CTCTTC	6 cut(s)	655, 837, 1344, 1461, 1734, 2259
EciI	GGCGGA	1 cut(s)	169
Ecl136II	GAGCTC	3 cut(s)	999, 1744, 3073
EclXI	CGGCCG	2 cut(s)	100, 261
Eco130I	CCWWGG	4 cut(s)	217, 516, 931, 2907
Eco24I	GRGCYC	3 cut(s)	1001, 1746, 3075
Eco32I	GATATC	1 cut(s)	1981
Eco47I	GGWCC	4 cut(s)	170, 268, 1629, 2833
Eco52I	CGGCCG	2 cut(s)	100, 261
Eco53kI	GAGCTC	3 cut(s)	999, 1744, 3073
Eco57I	CTGAAG	4 cut(s)	2028, 2220, 2283, 2412
EcoICRI	GAGCTC	3 cut(s)	999, 1744, 3073
EcoO109I	RGGNCCY	3 cut(s)	268, 1629, 2833
EcoRV	GATATC	1 cut(s)	1981
EcoT14I	CCWWGG	4 cut(s)	217, 516, 931, 2907
EcoT22I	ATGCAT	4 cut(s)	439, 585, 2059, 2553
EcoT38I	GRGCYC	3 cut(s)	1001, 1746, 3075
EgeI	GGCGCC	1 cut(s)	2228
EheI	GGCGCC	1 cut(s)	2228
ErhI	CCWWGG	4 cut(s)	217, 516, 931, 2907
Esp3I	CGTCTC	1 cut(s)	247
FalI	AAGNNNNNCTT	4 cut(s)	1338, 1370, 2598, 2630
FaqI	GGGAC	3 cut(s)	45, 156, 1667
FauI	CCCGC	2 cut(s)	206, 1145
FauNDI	CATATG	1 cut(s)	772
FbaI	TGATCA	2 cut(s)	93, 1357
FriOI	GRGCYC	3 cut(s)	1001, 1746, 3075
FspBI	CTAG	6 cut(s)	983, 1637, 2231, 2522, 2535, 2700
GlaI	GCGC	5 cut(s)	106, 119, 294, 2021, 2228
GsaI	CCCAGC	2 cut(s)	192, 1788
GsuI	CTGGAG	6 cut(s)	112, 585, 858, 1899, 2513, 2678
HaeII	RGCGCY	1 cut(s)	2230
HaeIII	GGCC	8 cut(s)	5, 102, 263, 278, 337, 620, 1434, 2453
HapII	CCGG	3 cut(s)	156, 248, 2454
HgaI	GACGC	3 cut(s)	229, 580, 2554
HhaI	GCGC	5 cut(s)	107, 120, 295, 2022, 2229
Hin1I	GRCGYC	4 cut(s)	140, 240, 2227, 2565
Hin6I	GCGC	5 cut(s)	105, 118, 293, 2020, 2227
HinP1I	GCGC	5 cut(s)	105, 118, 293, 2020, 2227
HincII	GTYRAC	1 cut(s)	2569
HindII	GTYRAC	1 cut(s)	2569
HindIII	AAGCTT	1 cut(s)	2397
HpaII	CCGG	3 cut(s)	156, 248, 2454
HphI	GGTGA	9 cut(s)	404, 718, 1126, 1607, 1653, 1740, 2048, 2468, 3104
Hpy166II	GTNNAC	3 cut(s)	164, 2569, 3188
Hpy8I	GTNNAC	3 cut(s)	164, 2569, 3188
Hpy99I	CGWCG	3 cut(s)	142, 145, 1584
HpyAV	CCTTC	9 cut(s)	63, 515, 1028, 1363, 1424, 1674, 1989, 2107, 3055
HpyCH4III	ACNGT	9 cut(s)	538, 851, 1075, 1192, 2083, 2103, 2255, 2472, 2942
HpyCH4IV	ACGT	4 cut(s)	140, 1279, 1582, 1975
HpySE526I	ACGT	4 cut(s)	140, 1279, 1582, 1975
Hsp92I	GRCGYC	4 cut(s)	140, 240, 2227, 2565
HspAI	GCGC	5 cut(s)	105, 118, 293, 2020, 2227
KasI	GGCGCC	1 cut(s)	2226
Kpn2I	TCCGGA	1 cut(s)	155
Ksp22I	TGATCA	2 cut(s)	93, 1357
LguI	GCTCTTC	3 cut(s)	837, 1344, 1734
MaeI	CTAG	6 cut(s)	983, 1637, 2231, 2522, 2535, 2700
MaeII	ACGT	4 cut(s)	140, 1279, 1582, 1975
MaeIII	GTNAC	8 cut(s)	319, 373, 424, 553, 893, 1192, 2364, 2461
MbiI	CCGCTC	3 cut(s)	195, 201, 2224
MflI	RGATCY	5 cut(s)	693, 1037, 1266, 1690, 1718
MhlI	GDGCHC	7 cut(s)	849, 931, 1001, 1746, 2253, 3075, 3209
MlsI	TGGCCA	1 cut(s)	620
MluNI	TGGCCA	1 cut(s)	620
Mly113I	GGCGCC	1 cut(s)	2227
MlyI	GAGTC	3 cut(s)	159, 1652, 2663
MmeI	TCCRAC	4 cut(s)	838, 1404, 2106, 2958
Mox20I	TGGCCA	1 cut(s)	620
Mph1103I	ATGCAT	4 cut(s)	439, 585, 2059, 2553
MroI	TCCGGA	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	798
MscI	TGGCCA	1 cut(s)	620
MslI	CAYNNNNRTG	4 cut(s)	852, 936, 1170, 2901
Msp20I	TGGCCA	1 cut(s)	620
MspCI	CTTAAG	1 cut(s)	3038
MspI	CCGG	3 cut(s)	156, 248, 2454
Mva1269I	GAATGC	3 cut(s)	415, 437, 3054
MvnI	CGCG	4 cut(s)	105, 118, 226, 260
NarI	GGCGCC	1 cut(s)	2227
NcoI	CCATGG	3 cut(s)	516, 931, 2907
NdeI	CATATG	1 cut(s)	772
NheI	GCTAGC	1 cut(s)	2521
NlaIV	GGNNCC	5 cut(s)	172, 1630, 1897, 2228, 2834
NmeAIII	GCCGAG	3 cut(s)	289, 304, 321
NmuCI	GTSAC	5 cut(s)	319, 373, 553, 893, 2461
NruI	TCGCGA	1 cut(s)	226
NsiI	ATGCAT	4 cut(s)	439, 585, 2059, 2553
NspI	RCATGY	6 cut(s)	818, 1175, 2339, 2372, 2551, 2830
NspV	TTCGAA	1 cut(s)	1805
PacI	TTAATTAA	1 cut(s)	1314
PaeI	GCATGC	1 cut(s)	818
PagI	TCATGA	1 cut(s)	1393
PaqCI	CACCTGC	2 cut(s)	1719, 1759
PciI	ACATGT	3 cut(s)	1171, 2368, 2826
PciSI	GCTCTTC	3 cut(s)	837, 1344, 1734
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	3 cut(s)	415, 437, 3054
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	8 cut(s)	206, 325, 758, 1124, 1497, 1772, 2212, 2662
PflFI	GACNNNGTC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	1731
PleI	GAGTC	3 cut(s)	159, 1652, 2662
PluTI	GGCGCC	1 cut(s)	2230
PpsI	GAGTC	3 cut(s)	159, 1652, 2662
Ppu21I	YACGTR	1 cut(s)	1280
PpuMI	RGGWCCY	3 cut(s)	268, 1629, 2833
PscI	ACATGT	3 cut(s)	1171, 2368, 2826
PsiI	TTATAA	1 cut(s)	873
Psp124BI	GAGCTC	3 cut(s)	1001, 1746, 3075
Psp5II	RGGWCCY	3 cut(s)	268, 1629, 2833
PspFI	CCCAGC	2 cut(s)	188, 1784
PspN4I	GGNNCC	5 cut(s)	172, 1630, 1897, 2228, 2834
PspPI	GGNCC	4 cut(s)	170, 268, 1629, 2833
PspPPI	RGGWCCY	3 cut(s)	268, 1629, 2833
PsrI	GAACNNNNNNTAC	2 cut(s)	3169, 3201
PstI	CTGCAG	1 cut(s)	3142
PstNI	CAGNNNCTG	2 cut(s)	1507, 2386
PsuI	RGATCY	5 cut(s)	693, 1037, 1266, 1690, 1718
PsyI	GACNNNGTC	1 cut(s)	168
RruI	TCGCGA	1 cut(s)	226
RsaI	GTAC	8 cut(s)	44, 215, 383, 416, 769, 1762, 2579, 3220
RsaNI	GTAC	8 cut(s)	43, 214, 382, 415, 768, 1761, 2578, 3219
RseI	CAYNNNNRTG	4 cut(s)	852, 936, 1170, 2901
SacI	GAGCTC	3 cut(s)	1001, 1746, 3075
SapI	GCTCTTC	3 cut(s)	837, 1344, 1734
Sau96I	GGNCC	4 cut(s)	170, 268, 1629, 2833
SchI	GAGTC	3 cut(s)	159, 1652, 2663
SduI	GDGCHC	7 cut(s)	849, 931, 1001, 1746, 2253, 3075, 3209
SfcI	CTRYAG	1 cut(s)	3138
SfoI	GGCGCC	1 cut(s)	2228
SfuI	TTCGAA	1 cut(s)	1805
SgrAI	CRCCGGYG	1 cut(s)	247
SinI	GGWCC	4 cut(s)	170, 268, 1629, 2833
SmiMI	CAYNNNNRTG	4 cut(s)	852, 936, 1170, 2901
SmlI	CTYRAG	4 cut(s)	689, 1779, 2723, 3038
SmoI	CTYRAG	4 cut(s)	689, 1779, 2723, 3038
SphI	GCATGC	1 cut(s)	818
SspDI	GGCGCC	1 cut(s)	2226
SspMI	CTAG	6 cut(s)	983, 1637, 2231, 2522, 2535, 2700
SstI	GAGCTC	3 cut(s)	1001, 1746, 3075
StyI	CCWWGG	4 cut(s)	217, 516, 931, 2907
TaaI	ACNGT	9 cut(s)	538, 851, 1075, 1192, 2083, 2103, 2255, 2472, 2942
TaiI	ACGT	4 cut(s)	143, 1282, 1585, 1978
TaqI	TCGA	6 cut(s)	71, 441, 1120, 1805, 1857, 3046
TaqII	GACCGA	2 cut(s)	158, 307
TatI	WGTACW	2 cut(s)	1760, 2577
TauI	GCSGC	5 cut(s)	105, 195, 240, 263, 2227
TfiI	GAWTC	8 cut(s)	206, 325, 758, 1124, 1497, 1772, 2212, 2662
TscAI	CASTG	5 cut(s)	541, 915, 1804, 2108, 2947
TseFI	GTSAC	5 cut(s)	319, 373, 553, 893, 2461
Tsp45I	GTSAC	5 cut(s)	319, 373, 553, 893, 2461
TspGWI	ACGGA	1 cut(s)	1625
TspRI	CASTG	5 cut(s)	541, 915, 1804, 2108, 2947
Tth111I	GACNNNGTC	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	1731
Vha464I	CTTAAG	1 cut(s)	3038
VpaK11BI	GGWCC	4 cut(s)	170, 268, 1629, 2833
XapI	RAATTY	3 cut(s)	739, 1332, 2747
XbaI	TCTAGA	1 cut(s)	2534
XceI	RCATGY	6 cut(s)	818, 1175, 2339, 2372, 2551, 2830
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	6 cut(s)	983, 1637, 2231, 2522, 2535, 2700
ZraI	GACGTC	1 cut(s)	141
Zsp2I	ATGCAT	4 cut(s)	439, 585, 2059, 2553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.