Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013804.1

Orthogroup ID

OG0004310

Physical Location & Seq

Genomic Coordinates Forward (+)

45220 .. 48184

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013804.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggcctcgtcctccagagcaaggagcagctcgccattctcgtaccgcaagccttcaagtccctactcctcgacctcctcctcctcctcgctgatcaacggccgcgctctcattccgcgctcctgctccagctcagcgacgtcgttttacaactccggaagtggactcggtccccgatccgccacgcccagccgctcccgctccgaatcaatgtaccaaggctcgcgatcctacggaggcgtctcgccggtggggttcgcggccgaggaccttatggccgagattgtggatgcgccgaggtctggggatagcatttcggtcacgattcggtttcggcctctcagcgagagggagtatcagagaggggatgaggtcacttggtatgcagatggtgataagattgtgcggaatgcgtacaatccagttacagcctatgcattcgataaagtttttggacaggatacgatttcgcaagaggtgtatgaggttgctgccaaacctgtggtcaaagctgccatggaaggtgtcaatggcactgtttttgcctatggtgtgacaagtagtgggaagacgcacactatgcatggagatcaaaacgctccaggtgttataccattggccataaaagatgtattcagtatgatccaagataccccaggaagagagtttttacttcgtgtctcgtatcttgagatctacaatgaggtgataaatgacttgcttgacccaacaggtcaaaatttgcgtgttagagaagattcacaggtttgcttattttcttttattagaattcctaattccttattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031347 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin zf-C3HC4_3

Protein Analysis

269

Amino Acids

29.23

Weight (kDa)

6.75

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21380 AT2G21380 AT4G39050
fragaria_vesca	FvH4_2g10080
malus_domestica	MD05G1058100.v1.1 MD10G1065900.v1.1
prunus_persica	Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1
pyrus_communis	pycom05g04920 pycom10g05130 pycom10g05140
rosa_chinensis	RchiOBHm_Chr6g0267011
rosa_laevigata	RLG00000014051 RLG00000027737 RLG00000037008
rosa_multiflora	Rmu_co8233357.1_g000001 Rmu_sc0013804.1_g000010 Rmu_sc0017071.1_g000008 Rmu_sc0037796.1_g000001 Rmu_sc0041080.1_g000001 Rmu_ssc0000341.1_g000028
rosa_roxburghii	Rroxscaffold_2G00112220 Rroxscaffold_7G00201230
rosa_rugosa	Rorug06G0028400 Rorug06G0028400 Rorug06G0028400
rosa_samantha	Rh1AG191400 Rh1CG176500 Rh6AG150000 Rh6CG146100
rosa_wichuraiana	Rw6G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
AccBSI	CCGCTC	2 cut(s)	195, 201
AccII	CGCG	4 cut(s)	105, 118, 226, 260
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	8 cut(s)	46, 103, 116, 180, 193, 199, 260, 406
AclWI	GGATC	3 cut(s)	171, 222, 637
AcoI	YGGCCR	4 cut(s)	100, 261, 276, 618
AcsI	RAATTY	2 cut(s)	739, 789
AcyI	GRCGYC	2 cut(s)	140, 240
AfaI	GTAC	3 cut(s)	44, 215, 416
AfiI	CCNNNNNNNGG	2 cut(s)	21, 302
AgsI	TTSAA	1 cut(s)	57
AjnI	CCWGG	2 cut(s)	601, 655
AluBI	AGCT	3 cut(s)	30, 132, 512
AluI	AGCT	3 cut(s)	30, 132, 512
Alw26I	GTCTC	2 cut(s)	247, 685
AlwI	GGATC	3 cut(s)	171, 222, 637
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	6 cut(s)	3, 100, 261, 276, 335, 618
ApeKI	GCWGC	3 cut(s)	27, 491, 512
ApoI	RAATTY	2 cut(s)	739, 789
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AspLEI	GCGC	3 cut(s)	107, 120, 295
AspS9I	GGNCC	2 cut(s)	170, 268
AsuHPI	GGTGA	2 cut(s)	404, 718
AvaII	GGWCC	2 cut(s)	170, 268
BalI	TGGCCA	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	575
BbvI	GCAGC	3 cut(s)	39, 478, 499
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	603, 657
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	247, 685
BfuI	GTATCC	1 cut(s)	454
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	6 cut(s)	28, 103, 193, 261, 492, 513
BlpI	GCTNAGC	1 cut(s)	133
BlsI	GCNGC	6 cut(s)	29, 104, 194, 262, 493, 514
Bme1390I	CCNGG	2 cut(s)	603, 657
Bme18I	GGWCC	2 cut(s)	170, 268
BmgT120I	GGNCC	2 cut(s)	170, 268
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	2 cut(s)	603, 657
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	2 cut(s)	112, 585
Bpu1102I	GCTNAGC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	710
BsaHI	GRCGYC	2 cut(s)	140, 240
BsaJI	CCNNGG	5 cut(s)	217, 264, 296, 516, 655
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 302
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	422
BseAI	TCCGGA	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	603, 657
BseDI	CCNNGG	5 cut(s)	217, 264, 296, 516, 655
BseGI	GGATG	2 cut(s)	295, 373
BseLI	CCNNNNNNNGG	2 cut(s)	21, 302
BseMII	CTCAG	2 cut(s)	147, 355
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	5 cut(s)	58, 67, 70, 73, 76
BseX3I	CGGCCG	2 cut(s)	100, 261
BseXI	GCAGC	3 cut(s)	39, 478, 499
BseYI	CCCAGC	1 cut(s)	188
Bsh1236I	CGCG	4 cut(s)	105, 118, 226, 260
Bsh1285I	CGRYCG	2 cut(s)	103, 264
BshFI	GGCC	6 cut(s)	5, 102, 263, 278, 337, 620
BsiEI	CGRYCG	2 cut(s)	103, 264
BsiSI	CCGG	2 cut(s)	156, 248
BslFI	GGGAC	2 cut(s)	45, 156
BslI	CCNNNNNNNGG	2 cut(s)	21, 302
BsmAI	GTCTC	2 cut(s)	247, 685
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	45, 156
BsmI	GAATGC	2 cut(s)	415, 437
BsnI	GGCC	6 cut(s)	5, 102, 263, 278, 337, 620
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	6 cut(s)	93, 176, 227, 589, 642, 693
Bsp1720I	GCTNAGC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	516
Bsp68I	TCGCGA	1 cut(s)	226
BspACI	CCGC	8 cut(s)	46, 103, 116, 180, 193, 199, 260, 406
BspANI	GGCC	6 cut(s)	5, 102, 263, 278, 337, 620
BspCNI	CTCAG	2 cut(s)	146, 354
BspEI	TCCGGA	1 cut(s)	155
BspFNI	CGCG	4 cut(s)	105, 118, 226, 260
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	3 cut(s)	171, 222, 637
BsrBI	CCGCTC	2 cut(s)	195, 201
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	5 cut(s)	217, 264, 296, 516, 655
BssMI	GATC	6 cut(s)	93, 176, 227, 589, 642, 693
BssNI	GRCGYC	2 cut(s)	140, 240
BssT1I	CCWWGG	2 cut(s)	217, 516
Bst2UI	CCWGG	2 cut(s)	603, 657
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	655
BstACI	GRCGYC	2 cut(s)	140, 240
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstC8I	GCNNGC	3 cut(s)	32, 50, 224
BstDEI	CTNAG	2 cut(s)	133, 341
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	295, 373
BstFNI	CGCG	4 cut(s)	105, 118, 226, 260
BstHHI	GCGC	3 cut(s)	107, 120, 295
BstKTI	GATC	6 cut(s)	96, 179, 230, 592, 645, 696
BstMAI	GTCTC	2 cut(s)	247, 685
BstMBI	GATC	6 cut(s)	93, 176, 227, 589, 642, 693
BstMCI	CGRYCG	2 cut(s)	103, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 580
BstNI	CCWGG	2 cut(s)	603, 657
BstSCI	CCNGG	2 cut(s)	601, 655
BstUI	CGCG	4 cut(s)	105, 118, 226, 260
BstV1I	GCAGC	3 cut(s)	39, 478, 499
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	693
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	693
BstZI	CGGCCG	2 cut(s)	100, 261
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	6 cut(s)	5, 102, 263, 278, 337, 620
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	295, 373
BtsIMutI	CAGTG	1 cut(s)	534
BtuMI	TCGCGA	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	32, 50, 224
CfoI	GCGC	3 cut(s)	107, 120, 295
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	170, 268
CseI	GACGC	2 cut(s)	229, 580
Csp6I	GTAC	3 cut(s)	43, 214, 415
CviAII	CATG	2 cut(s)	517, 584
CviQI	GTAC	3 cut(s)	43, 214, 415
DdeI	CTNAG	2 cut(s)	133, 341
DpnI	GATC	6 cut(s)	95, 178, 229, 591, 644, 695
DpnII	GATC	6 cut(s)	93, 176, 227, 589, 642, 693
EaeI	YGGCCR	4 cut(s)	100, 261, 276, 618
EagI	CGGCCG	2 cut(s)	100, 261
Eam1104I	CTCTTC	1 cut(s)	655
EarI	CTCTTC	1 cut(s)	655
EciI	GGCGGA	1 cut(s)	169
EclXI	CGGCCG	2 cut(s)	100, 261
Eco130I	CCWWGG	2 cut(s)	217, 516
Eco47I	GGWCC	2 cut(s)	170, 268
Eco52I	CGGCCG	2 cut(s)	100, 261
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	789
EcoRII	CCWGG	2 cut(s)	601, 655
EcoT14I	CCWWGG	2 cut(s)	217, 516
EcoT22I	ATGCAT	2 cut(s)	439, 585
ErhI	CCWWGG	2 cut(s)	217, 516
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	2 cut(s)	520, 587
FaqI	GGGAC	2 cut(s)	45, 156
FatI	CATG	2 cut(s)	516, 583
FauI	CCCGC	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	6 cut(s)	28, 103, 193, 261, 492, 513
FokI	GGATG	2 cut(s)	302, 380
Fsp4HI	GCNGC	6 cut(s)	28, 103, 193, 261, 492, 513
GlaI	GCGC	3 cut(s)	106, 119, 294
GluI	GCNGC	6 cut(s)	28, 103, 193, 261, 492, 513
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	2 cut(s)	112, 585
HaeIII	GGCC	6 cut(s)	5, 102, 263, 278, 337, 620
HapII	CCGG	2 cut(s)	156, 248
HgaI	GACGC	2 cut(s)	229, 580
HhaI	GCGC	3 cut(s)	107, 120, 295
Hin1I	GRCGYC	2 cut(s)	140, 240
Hin1II	CATG	2 cut(s)	520, 587
Hin6I	GCGC	3 cut(s)	105, 118, 293
HinP1I	GCGC	3 cut(s)	105, 118, 293
HinfI	GANTC	4 cut(s)	165, 206, 325, 758
HpaII	CCGG	2 cut(s)	156, 248
HphI	GGTGA	2 cut(s)	404, 718
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	205, 360
Hpy188III	TCNNGA	5 cut(s)	15, 156, 225, 322, 689
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	2 cut(s)	142, 145
HpyAV	CCTTC	2 cut(s)	63, 515
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	386, 437, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 580
HpyF3I	CTNAG	2 cut(s)	133, 341
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	2 cut(s)	140, 240
Hsp92II	CATG	2 cut(s)	520, 587
HspAI	GCGC	3 cut(s)	105, 118, 293
Kpn2I	TCCGGA	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	93, 176, 227, 589, 642, 693
LmnI	GCTCC	6 cut(s)	24, 125, 131, 200, 206, 604
Lsp1109I	GCAGC	3 cut(s)	39, 478, 499
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	4 cut(s)	319, 373, 424, 553
MalI	GATC	6 cut(s)	95, 178, 229, 591, 644, 695
MbiI	CCGCTC	2 cut(s)	195, 201
MboI	GATC	6 cut(s)	93, 176, 227, 589, 642, 693
MboII	GAAGA	3 cut(s)	580, 672, 767
MflI	RGATCY	1 cut(s)	693
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	3 cut(s)	739, 789, 796
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	159
Mox20I	TGGCCA	1 cut(s)	620
Mph1103I	ATGCAT	2 cut(s)	439, 585
MroI	TCCGGA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	620
Msp20I	TGGCCA	1 cut(s)	620
MspI	CCGG	2 cut(s)	156, 248
MspR9I	CCNGG	2 cut(s)	603, 657
Mva1269I	GAATGC	2 cut(s)	415, 437
MvaI	CCWGG	2 cut(s)	603, 657
MvnI	CGCG	4 cut(s)	105, 118, 226, 260
MwoI	GCNNNNNNNGC	2 cut(s)	198, 580
NcoI	CCATGG	1 cut(s)	516
NdeII	GATC	6 cut(s)	93, 176, 227, 589, 642, 693
NlaIII	CATG	2 cut(s)	520, 587
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	3 cut(s)	289, 304, 321
NmuCI	GTSAC	3 cut(s)	319, 373, 553
NruI	TCGCGA	1 cut(s)	226
NsiI	ATGCAT	2 cut(s)	439, 585
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	2 cut(s)	415, 437
PfeI	GAWTC	3 cut(s)	206, 325, 758
PflFI	GACNNNGTC	1 cut(s)	168
PkrI	GCNGC	6 cut(s)	29, 104, 194, 262, 493, 514
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	601, 655
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	601, 655
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	170, 268
PspPPI	RGGWCCY	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	693
PsyI	GACNNNGTC	1 cut(s)	168
RruI	TCGCGA	1 cut(s)	226
RsaI	GTAC	3 cut(s)	44, 215, 416
RsaNI	GTAC	3 cut(s)	43, 214, 415
SatI	GCNGC	6 cut(s)	28, 103, 193, 261, 492, 513
Sau3AI	GATC	6 cut(s)	93, 176, 227, 589, 642, 693
Sau96I	GGNCC	2 cut(s)	170, 268
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	603, 657
SfaNI	GCATC	1 cut(s)	280
SgrAI	CRCCGGYG	1 cut(s)	247
SinI	GGWCC	2 cut(s)	170, 268
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	3 cut(s)	739, 789, 796
SsiI	CCGC	8 cut(s)	46, 103, 116, 180, 193, 199, 260, 406
StyD4I	CCNGG	2 cut(s)	601, 655
StyI	CCWWGG	2 cut(s)	217, 516
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	71, 441
TaqII	GACCGA	2 cut(s)	158, 307
TasI	AATT	3 cut(s)	739, 789, 796
TauI	GCSGC	3 cut(s)	105, 195, 263
TfiI	GAWTC	3 cut(s)	206, 325, 758
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	3 cut(s)	319, 373, 553
TseI	GCWGC	3 cut(s)	27, 491, 512
Tsp45I	GTSAC	3 cut(s)	319, 373, 553
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	541
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	170, 268
XapI	RAATTY	2 cut(s)	739, 789
ZraI	GACGTC	1 cut(s)	141
Zsp2I	ATGCAT	2 cut(s)	439, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.