Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037796.1

Orthogroup ID

OG0004310

Physical Location & Seq

Genomic Coordinates Forward (+)

18 .. 355

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037796.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

atgcagataaaatcagcagacaatcgtattcttcaagagcaactgcaaaataagtgtgcagagaacttggaattgcaagaaaaagtgaatcagttagagcggcgcctagcttcagggttttccgagcacggtgtgtctgaagagtatgttgatgaattgagaaagaaaatccagtctcaggtgattgccgatctttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031347 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin zf-C3HC4_3

Protein Analysis

66

Amino Acids

7.63

Weight (kDa)

5.05

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21380 AT2G21380 AT4G39050
fragaria_vesca	FvH4_2g10080
malus_domestica	MD05G1058100.v1.1 MD10G1065900.v1.1
prunus_persica	Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1
pyrus_communis	pycom05g04920 pycom10g05130 pycom10g05140
rosa_chinensis	RchiOBHm_Chr6g0267011
rosa_laevigata	RLG00000014051 RLG00000027737 RLG00000037008
rosa_multiflora	Rmu_co8233357.1_g000001 Rmu_sc0013804.1_g000010 Rmu_sc0017071.1_g000008 Rmu_sc0037796.1_g000001 Rmu_sc0041080.1_g000001 Rmu_ssc0000341.1_g000028
rosa_roxburghii	Rroxscaffold_2G00112220 Rroxscaffold_7G00201230
rosa_rugosa	Rorug06G0028400 Rorug06G0028400 Rorug06G0028400
rosa_samantha	Rh1AG191400 Rh1CG176500 Rh6AG150000 Rh6CG146100
rosa_wichuraiana	Rw6G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	1 cut(s)	100
AcuI	CTGAAG	2 cut(s)	96, 159
AcyI	GRCGYC	1 cut(s)	103
AdeI	CACNNNGTG	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	177, 198
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	105
CviJI	RGCY	1 cut(s)	110
CviKI_1	RGCY	1 cut(s)	110
DdeI	CTNAG	2 cut(s)	177, 198
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraIII	CACNNNGTG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco57I	CTGAAG	2 cut(s)	96, 159
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
FaiI	YATR	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	1 cut(s)	107
FspEI	CC	9 cut(s)	53, 85, 99, 100, 114, 119, 136, 164, 185
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	106
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	124, 139
Hpy188III	TCNNGA	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	4 cut(s)	4, 46, 59, 76
HpyF3I	CTNAG	2 cut(s)	177, 198
Hsp92I	GRCGYC	1 cut(s)	103
HspAI	GCGC	1 cut(s)	103
KasI	GGCGCC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	3 cut(s)	99, 164, 185
MaeI	CTAG	1 cut(s)	107
MalI	GATC	1 cut(s)	192
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	23, 152
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	2 cut(s)	71, 155
Mly113I	GGCGCC	1 cut(s)	103
NarI	GGCGCC	1 cut(s)	103
NdeII	GATC	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	102
PluTI	GGCGCC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	104
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	2 cut(s)	112, 183
SfoI	GGCGCC	1 cut(s)	104
SgeI	CNNG	9 cut(s)	47, 79, 89, 119, 126, 136, 140, 184, 191
Sse9I	AATT	2 cut(s)	71, 155
SsiI	CCGC	1 cut(s)	100
SspDI	GGCGCC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	131
TasI	AATT	2 cut(s)	71, 155
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	168
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.