Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006665

Physical Location & Seq

Genomic Coordinates Forward (+)

5679361 .. 5681237

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031504

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGCATCTTCTCTCTTCATTCTCCTCCTCATCATCATCACCGCCCCCGTCGCTTCACCCCCAACCACCATCATCACCGCCCCCCCCGCTTCGCCTTCCACACCTCCTCCTCCTCTGGCCACAGCGACGGATCCATCTACCTCATGGCTTCCGCCGCCGCCGCCGCCTCAGTCCAGAGCGACGGATTCTTCCACCTCAGCGGTTCCGCCGCCGCCTCAGTCCAGAGCGACGGATTCTTCCACCTCAGCGGTTCCGCCGCCGCCTCCTCCTGCCACAGCGACGGATCCTTCCACCTCACGGCTTCAAAACCCAGAGACATTCGCACTCACAGAAAACATCAACCTTCTCTCTCTCATGCCCCCAAATCTGCATCCATCACCATCTCTCTGGTTCCTCCGCATCACCACCACCGTCACCGCTTCCGCCACCGCCTCACCGCTTCCGCCGCCGCCGCCGCCTCCTCCTCCAACTACCGCATCACCTCCTCCGCCACACATTCTGGGTTCCACTTTCGGGACGTGTAGCACTAAGGTCTGCTCCCCTCAGTACCCATTCACAGAATCTTGGTCCAAATACCCATTCACACAATCTTGGTCCAAATACGCTATGCCACTAATTCTTGTAGGATGTATGGCTGTACTCTACAAGTGGTTTCCAGGTACATTCCGGTTTCTGGCCTGTTTTGAGCTGTTCAGCATATTCGGCGGTCATGGTGGCGCTGCTGATAACGGAGGAGGGGCGGCAACCGTTTGGGGACTGACAGCCGCCGGAGTAGCCGCTCTGGTTTCGATTCTGGGTGGTGTTGTTGTTGCCTGCCTCCGCACAACTGCTTCATGGCTCGCCACTCTGCTTCTAATTGGGAGAAACTCCGGGAGACACTCCGCGATCGCCGTCAGAGCGGGCGGAGCCGTCGTGGCCAGAGGAGTATTTGCAGTTGGCAGTGCCATCGGACATGGCGGAGCCGTCGTGGGCAGAGCCATCGGAAATGGAGGAGCCGTCGTGGGCAGAGCCATCGGACAGGGCGGAGCCTTCGTGGGCAGAGCCATCGGACAGGGAGGAGCCGTCGTGGGCAGGGGCGGAGCCGTCGTGTGCAGAGCCATCGTCCGACCGGCCAGAGCCGTCTTCGGCAGAGGCGACACAGCGAAGCCACAGCCACCGCAGAGGGTTGGCCTTCAACACTTACTGGTTCCCCATTTCTTGAGGGTTGAGGCTGAGGAGCGGCCTGAGATATCTGCTGCGCCGTTTTTTTGGCTTTGCCAAGGCTTGGTTGTATGGTTTGGGGACTTTCATGATGTTGATATAGGCAGGCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

439

Amino Acids

45.03

Weight (kDa)

9.57

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33760
fragaria_vesca	FvH4_4g05520
malus_domestica	MD10G1295100.v1.1
prunus_persica	Prupe.4G047100_v2.0.a1
pyrus_communis	pycom10g24690
rosa_chinensis	RchiOBHm_Chr5g0008361
rosa_laevigata	RLG00000031504 RLG00000031508 RLG00000031509 RLG00000031512 RLG00000031518 RLG00000031519 RLG00000031564
rosa_multiflora	Rmu_sc0008805.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055520 Rroxscaffold_1G00068130 Rroxscaffold_1G00068520
rosa_rugosa	Rorug04G0435500
rosa_samantha	Rh5AG059900 Rh5AG060000 Rh5AG064000 Rh5BG060900 Rh5CG070900 Rh6CG126900
rosa_wichuraiana	Rw5G005700 Rw5G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1264
AccBSI	CCGCTC	3 cut(s)	779, 899, 1219
AccII	CGCG	1 cut(s)	884
AclWI	GGATC	4 cut(s)	125, 138, 278, 291
AcoI	YGGCCR	3 cut(s)	117, 915, 1110
AfaI	GTAC	3 cut(s)	548, 639, 661
AfiI	CCNNNNNNNGG	4 cut(s)	297, 513, 673, 1264
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	305, 1175
AjiI	CACGTC	1 cut(s)	519
AjnI	CCWGG	1 cut(s)	655
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AluBI	AGCT	1 cut(s)	688
AluI	AGCT	1 cut(s)	688
Alw26I	GTCTC	2 cut(s)	308, 868
AlwI	GGATC	4 cut(s)	125, 138, 278, 291
AoxI	GGCC	6 cut(s)	117, 675, 915, 1110, 1168, 1220
ApeKI	GCWGC	2 cut(s)	719, 1235
AsiSI	GCGATCGC	1 cut(s)	888
AspLEI	GCGC	2 cut(s)	719, 1240
AspS9I	GGNCC	2 cut(s)	567, 594
AsuC2I	CCSGG	1 cut(s)	871
AsuHPI	GGTGA	8 cut(s)	31, 48, 67, 369, 394, 406, 426, 471
AvaII	GGWCC	2 cut(s)	567, 594
BalI	TGGCCA	2 cut(s)	119, 917
BamHI	GGATCC	2 cut(s)	130, 283
BbsI	GAAGAC	1 cut(s)	1114
BbvCI	CCTCAGC	3 cut(s)	196, 244, 1212
BbvI	GCAGC	2 cut(s)	706, 1222
BccI	CCATC	9 cut(s)	77, 142, 382, 388, 953, 986, 1019, 1052, 1106
BceAI	ACGGC	9 cut(s)	314, 875, 893, 947, 980, 1046, 1067, 1103, 1225
BciT130I	CCWGG	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	871
BcoDI	GTCTC	2 cut(s)	308, 868
BfoI	RGCGCY	1 cut(s)	720
BglI	GCCNNNNNGGC	1 cut(s)	914
Bme1390I	CCNGG	2 cut(s)	657, 871
Bme18I	GGWCC	2 cut(s)	567, 594
BmgBI	CACGTC	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	567, 594
BmrFI	CCNGG	2 cut(s)	657, 871
BmsI	GCATC	4 cut(s)	14, 379, 408, 485
BpiI	GAAGAC	1 cut(s)	1114
Bpu10I	CCTNAGC	3 cut(s)	196, 244, 1212
BpuEI	CTTGAG	1 cut(s)	1219
BpuMI	CCSGG	1 cut(s)	871
BsaJI	CCNNGG	1 cut(s)	1258
BsaWI	WCCGGW	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 513, 673, 1264
Bse118I	RCCGGY	1 cut(s)	1108
Bse1I	ACTGG	1 cut(s)	1188
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	1258
BseGI	GGATG	2 cut(s)	370, 632
BseLI	CCNNNNNNNGG	4 cut(s)	297, 513, 673, 1264
BseMII	CTCAG	7 cut(s)	182, 210, 230, 258, 557, 1203, 1215
BseNI	ACTGG	1 cut(s)	1188
BseXI	GCAGC	2 cut(s)	706, 1222
BsgI	GTGCAG	1 cut(s)	1111
Bsh1236I	CGCG	1 cut(s)	884
Bsh1285I	CGRYCG	2 cut(s)	888, 1109
BshFI	GGCC	6 cut(s)	119, 677, 917, 1112, 1170, 1222
BsiEI	CGRYCG	2 cut(s)	888, 1109
BsiSI	CCGG	4 cut(s)	667, 768, 870, 1109
BslFI	GGGAC	3 cut(s)	529, 768, 1295
BslI	CCNNNNNNNGG	4 cut(s)	297, 513, 673, 1264
BsmAI	GTCTC	2 cut(s)	308, 868
BsmFI	GGGAC	3 cut(s)	529, 768, 1295
BsnI	GGCC	6 cut(s)	119, 677, 917, 1112, 1170, 1222
Bsp143I	GATC	3 cut(s)	130, 283, 885
BspANI	GGCC	6 cut(s)	119, 677, 917, 1112, 1170, 1222
BspCNI	CTCAG	7 cut(s)	181, 209, 229, 257, 556, 1204, 1216
BspFNI	CGCG	1 cut(s)	884
BspHI	TCATGA	1 cut(s)	1288
BspPI	GGATC	4 cut(s)	125, 138, 278, 291
BsrBI	CCGCTC	3 cut(s)	779, 899, 1219
BsrFI	RCCGGY	1 cut(s)	1108
BsrI	ACTGG	1 cut(s)	1188
BssAI	RCCGGY	1 cut(s)	1108
BssECI	CCNNGG	1 cut(s)	1258
BssMI	GATC	3 cut(s)	130, 283, 885
BssT1I	CCWWGG	1 cut(s)	1258
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	2 cut(s)	412, 748
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	4 cut(s)	814, 840, 901, 1307
BstDEI	CTNAG	8 cut(s)	168, 196, 216, 244, 528, 543, 1212, 1224
BstF5I	GGATG	2 cut(s)	370, 632
BstFNI	CGCG	1 cut(s)	884
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	2 cut(s)	719, 1240
BstKTI	GATC	3 cut(s)	133, 286, 888
BstMAI	GTCTC	2 cut(s)	308, 868
BstMBI	GATC	3 cut(s)	130, 283, 885
BstMCI	CGRYCG	2 cut(s)	888, 1109
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	655, 869
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	2 cut(s)	706, 1222
BstV2I	GAAGAC	1 cut(s)	1114
BstX2I	RGATCY	2 cut(s)	130, 283
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	2 cut(s)	130, 283
BsuRI	GGCC	6 cut(s)	119, 677, 917, 1112, 1170, 1222
BtrI	CACGTC	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	370, 632
BtsI	GCAGTG	1 cut(s)	946
BtsIMutI	CAGTG	1 cut(s)	946
Cac8I	GCNNGC	4 cut(s)	814, 840, 901, 1307
CciI	TCATGA	1 cut(s)	1288
CfoI	GCGC	2 cut(s)	719, 1240
Cfr10I	RCCGGY	1 cut(s)	1108
Cfr13I	GGNCC	2 cut(s)	567, 594
Csp6I	GTAC	3 cut(s)	547, 638, 660
CviAII	CATG	6 cut(s)	144, 355, 710, 834, 953, 1289
CviQI	GTAC	3 cut(s)	547, 638, 660
DdeI	CTNAG	8 cut(s)	168, 196, 216, 244, 528, 543, 1212, 1224
DpnI	GATC	3 cut(s)	132, 285, 887
DpnII	GATC	3 cut(s)	130, 283, 885
EaeI	YGGCCR	3 cut(s)	117, 915, 1110
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	1258
Eco32I	GATATC	1 cut(s)	1230
Eco47I	GGWCC	2 cut(s)	567, 594
EcoRII	CCWGG	1 cut(s)	655
EcoRV	GATATC	1 cut(s)	1230
EcoT14I	CCWWGG	1 cut(s)	1258
ErhI	CCWWGG	1 cut(s)	1258
FaeI	CATG	6 cut(s)	147, 358, 713, 837, 956, 1292
FaqI	GGGAC	3 cut(s)	529, 768, 1295
FatI	CATG	6 cut(s)	143, 354, 709, 833, 952, 1288
FauI	CCCGC	2 cut(s)	94, 892
FokI	GGATG	2 cut(s)	357, 639
GlaI	GCGC	2 cut(s)	718, 1239
HaeII	RGCGCY	1 cut(s)	720
HaeIII	GGCC	6 cut(s)	119, 677, 917, 1112, 1170, 1222
HapII	CCGG	4 cut(s)	667, 768, 870, 1109
HhaI	GCGC	2 cut(s)	719, 1240
Hin1II	CATG	6 cut(s)	147, 358, 713, 837, 956, 1292
Hin6I	GCGC	2 cut(s)	717, 1238
HinP1I	GCGC	2 cut(s)	717, 1238
HinfI	GANTC	4 cut(s)	185, 233, 560, 790
HpaII	CCGG	4 cut(s)	667, 768, 870, 1109
HphI	GGTGA	8 cut(s)	31, 48, 67, 369, 394, 406, 426, 471
Hpy188I	TCNGA	6 cut(s)	896, 950, 983, 1016, 1049, 1106
Hpy188III	TCNNGA	5 cut(s)	174, 222, 514, 1198, 1289
HpyAV	CCTTC	5 cut(s)	105, 297, 353, 1039, 1181
HpyCH4III	ACNGT	2 cut(s)	412, 748
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	3 cut(s)	370, 932, 1092
HpyF3I	CTNAG	8 cut(s)	168, 196, 216, 244, 528, 543, 1212, 1224
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	6 cut(s)	147, 358, 713, 837, 956, 1292
HspAI	GCGC	2 cut(s)	717, 1238
Kzo9I	GATC	3 cut(s)	130, 283, 885
LmnI	GCTCC	8 cut(s)	542, 905, 959, 992, 1025, 1058, 1079, 1216
Lsp1109I	GCAGC	2 cut(s)	706, 1222
LweI	GCATC	4 cut(s)	14, 379, 408, 485
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	132, 285, 887
MbiI	CCGCTC	3 cut(s)	779, 899, 1219
MboI	GATC	3 cut(s)	130, 283, 885
MboII	GAAGA	4 cut(s)	7, 180, 228, 1114
MflI	RGATCY	2 cut(s)	130, 283
MlsI	TGGCCA	2 cut(s)	119, 917
MluCI	AATT	2 cut(s)	615, 855
MluNI	TGGCCA	2 cut(s)	119, 917
MmeI	TCCRAC	2 cut(s)	491, 1129
Mox20I	TGGCCA	2 cut(s)	119, 917
MscI	TGGCCA	2 cut(s)	119, 917
Msp20I	TGGCCA	2 cut(s)	119, 917
MspA1I	CMGCKG	2 cut(s)	200, 248
MspI	CCGG	4 cut(s)	667, 768, 870, 1109
MspR9I	CCNGG	2 cut(s)	657, 871
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	1 cut(s)	884
NciI	CCSGG	1 cut(s)	871
NdeII	GATC	3 cut(s)	130, 283, 885
NlaIII	CATG	6 cut(s)	147, 358, 713, 837, 956, 1292
NmuCI	GTSAC	1 cut(s)	412
PagI	TCATGA	1 cut(s)	1288
PcsI	WCGNNNNNNNCGW	1 cut(s)	1131
PfeI	GAWTC	4 cut(s)	185, 233, 560, 790
PflMI	CCANNNNNTGG	1 cut(s)	1264
PfoI	TCCNGGA	1 cut(s)	869
Ple19I	CGATCG	1 cut(s)	888
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspPI	GGNCC	2 cut(s)	567, 594
PsuI	RGATCY	2 cut(s)	130, 283
PvuI	CGATCG	1 cut(s)	888
RgaI	GCGATCGC	1 cut(s)	888
RsaI	GTAC	3 cut(s)	548, 639, 661
RsaNI	GTAC	3 cut(s)	547, 638, 660
Sau3AI	GATC	3 cut(s)	130, 283, 885
Sau96I	GGNCC	2 cut(s)	567, 594
ScrFI	CCNGG	2 cut(s)	657, 871
SfaAI	GCGATCGC	1 cut(s)	888
SfaNI	GCATC	4 cut(s)	14, 379, 408, 485
SgfI	GCGATCGC	1 cut(s)	888
SinI	GGWCC	2 cut(s)	567, 594
SmlI	CTYRAG	1 cut(s)	1198
SmoI	CTYRAG	1 cut(s)	1198
Sse9I	AATT	2 cut(s)	615, 855
StyD4I	CCNGG	2 cut(s)	655, 869
StyI	CCWWGG	1 cut(s)	1258
TaaI	ACNGT	2 cut(s)	412, 748
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	1 cut(s)	788
TasI	AATT	2 cut(s)	615, 855
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	4 cut(s)	185, 233, 560, 790
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	719, 1235
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	7, 822, 1277
TspGWI	ACGGA	5 cut(s)	143, 197, 245, 296, 744
TspRI	CASTG	1 cut(s)	946
Van91I	CCANNNNNTGG	1 cut(s)	1264
VpaK11BI	GGWCC	2 cut(s)	567, 594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.