Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006665

Physical Location & Seq

Genomic Coordinates Forward (+)

5307301 .. 5309816

Gene Structure 2516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG070900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGGAAACCAAACACAGCTCCCCGCCAAAATCTCCAGCCTACAAAGCTCTACTCAAAGCCGGTCCAAATCTGAAGCCTCTTCAACAAGTCCACGCCCACATTATCGTCTCTGGATCTCACCGCAGCCGATCACTCCTCACCAAGCTCATCACTCTGGCTTGCGAAGCCGGCTCGATTCTCTACACCCACAACCTCTTCATCTCCGTCCCTCACCCGGACTCCTTCCTCTTCAATTCCATAATCAAAGCATCCTCTAAGTTCGGCTTCCCTCAACACACTCTCTTCTTCTATCACTCCATGCTCGGCTTTCGAACCCCGCCGAGTAGTTACACCTTTACCTCTGTGATCAAGGCCTGCGCCGATCTAAGGGCTCTGAGACTCGGTAGGGGTGTGCATTCACATGTAGTGGTGTGTGGGTGTGGGTCGGAGCCGTTTGTTCAGGCGGCTCTTGTTAGCTTGTATTCGAAATGTGGGGAGTTTGGGGTTGCAAGGAAGGTGTTCGATGAAATGCCTGAGAGGAGTGTTGTGGGTTGGAACTCGATGATTTCGGGGTACGAGCAGAACGGGTTTTCGAGAGAGGCGATTGAGGTGTTTAAGGAGATGAGGGAGGCGGGTGTTGAGCCGGATTCGACTGGTTTCGTGAATGTTTTGGCGGCGTGTTCTCAGTTGGGAGATGCTGGTTTAGGGTGTTCGGTGCATGATGAGGTTGTCAGGAAGGGGATAGAAGTGAATGTGGCTCTAGGGACTTCGCTGATTAACATGTATGCTAGGTGTGGGGATGTGAGAAAAGCGCGAGAAGTTTTCGATTGTATGGATGAAAGGAATGTTATTACTTGGACTGCTATGATTTCGGGTTACGCAACGAATGGTTATGGTAGTCAAGCTATGGAGCTTTTTGGCGACATGAGAGCTCGTGGTCCTAGTCCTAACACCGTGACATTTGTTGCAGTCTTGGCGGCTTGTGCTCATGCTGGGCTAGTGAAAGAAGGAAGGCAGGCATATGCAAGCATGAGGCAAGAGTATGGATTAGTGCCGGGAGTGGAGCACCGTGTTTGCCTGGTTGATATGCTTGGGCGTTCTGGGCTTCTCGATGAAGCATATCAGTTCATCAAAGAGCTTAGCCCGGGAGAGGCAGCTCCACCTCTTTGGACTGCCATGCTTGGGGCTTGCAAGATGCATAAGAATACCGATCTCGGAGTAACAGTTGCTGAGCATCTTTTGGAGGTTGAGCCTGAAAATCCAGGCCATTATGTGATGCTTTCGAACATATATGCATTGGCAGGTAGGATGGATAGAGTGGAGATGGTTAGAAACATGATGAAAGGAAGAAGCTTGAGAAAGCAAGTTGGCTATAGTACAATACATGTGAATCAGAAAACCTATTTGTTTAGCATGGGCGACAAGTCCCACCCGGGGACAAATGAAATTTATCAGTATTTAGATGAATTGATGCGGCGGTGCAGTGAAGCAGGATATGCACCATCACCGGATTTAGTGATGCATGAAGTGGAAGAAGAAGAGAGGGAATATGCCCTTAGATATCACAGTGAGAAGCTTGCAATTGCATATGGGCTAATGAAAACCAAGGATGGTGAGGCCATTAGGATTGTAAAGAACCTCCGAATGTGTGAGGACTGCCATTCAGCTATTAAATTTATCTCAGTTGTTACCAAAAGAGAGATTATTGTTCGGGATAAGCTTCGCTTCCACCATTTCAAATATGGCTCCTGTTCATGCCTGGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

583

Amino Acids

64.82

Weight (kDa)

8.04

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	174 - 217	8.7e-10	PPR repeat family
PPR	PF01535	178 - 206	2.8e-09	PPR repeat
PPR_2	PF13041	274 - 323	5.4e-12	PPR repeat family
PPR_3	PF13812	275 - 321	4.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	277 - 306	4.5e-07	PPR repeat
E_motif	PF20431	393 - 454	2.5e-14	E motif
Eplus_motif	PF20430	460 - 486	4.7e-07	E+ motif
DYW_deaminase	PF14432	491 - 583	6.1e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33760
fragaria_vesca	FvH4_4g05520
malus_domestica	MD10G1295100.v1.1
prunus_persica	Prupe.4G047100_v2.0.a1
pyrus_communis	pycom10g24690
rosa_chinensis	RchiOBHm_Chr5g0008361
rosa_laevigata	RLG00000031504 RLG00000031508 RLG00000031509 RLG00000031512 RLG00000031518 RLG00000031519 RLG00000031564
rosa_multiflora	Rmu_sc0008805.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055520 Rroxscaffold_1G00068130 Rroxscaffold_1G00068520
rosa_rugosa	Rorug04G0435500
rosa_samantha	Rh5AG059900 Rh5AG060000 Rh5AG064000 Rh5BG060900 Rh5CG070900 Rh6CG126900
rosa_wichuraiana	Rw5G005700 Rw5G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1271
AccII	CGCG	1 cut(s)	793
AciI	CCGC	9 cut(s)	23, 121, 317, 443, 611, 653, 956, 1453, 1456
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	1425, 1652
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	554, 1357
AfiI	CCNNNNNNNGG	5 cut(s)	214, 366, 1129, 1161, 1413
AflIII	ACRYGT	3 cut(s)	400, 759, 1363
AgsI	TTSAA	3 cut(s)	83, 232, 1717
AjnI	CCWGG	3 cut(s)	1056, 1240, 1737
Alw21I	GWGCWC	3 cut(s)	913, 967, 1047
Alw26I	GTCTC	2 cut(s)	112, 370
AlwI	GGATC	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	1208
Ama87I	CYCGRG	2 cut(s)	1123, 1411
AoxI	GGCC	3 cut(s)	351, 1243, 1596
ApeKI	GCWGC	2 cut(s)	123, 1133
ApoI	RAATTY	2 cut(s)	1425, 1652
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	359, 793
AspS9I	GGNCC	2 cut(s)	62, 917
AsuC2I	CCSGG	6 cut(s)	215, 1035, 1124, 1125, 1412, 1413
AsuHPI	GGTGA	5 cut(s)	110, 130, 203, 1476, 1604
AsuII	TTCGAA	3 cut(s)	310, 464, 1262
AvaI	CYCGRG	2 cut(s)	1123, 1411
AvaII	GGWCC	2 cut(s)	62, 917
BanII	GRGCYC	2 cut(s)	373, 913
BauI	CACGAG	1 cut(s)	912
Bbv12I	GWGCWC	3 cut(s)	913, 967, 1047
BbvI	GCAGC	2 cut(s)	135, 1145
BccI	CCATC	4 cut(s)	1282, 1297, 1489, 1583
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	3 cut(s)	1058, 1242, 1739
BclI	TGATCA	1 cut(s)	345
BcnI	CCSGG	6 cut(s)	215, 1035, 1124, 1125, 1412, 1413
BcoDI	GTCTC	2 cut(s)	112, 370
BfaI	CTAG	4 cut(s)	740, 768, 921, 977
BfmI	CTRYAG	1 cut(s)	1351
BfuAI	ACCTGC	1 cut(s)	1271
BisI	GCNGC	6 cut(s)	124, 444, 654, 957, 1134, 1454
BlpI	GCTNAGC	2 cut(s)	1118, 1209
BlsI	GCNGC	6 cut(s)	125, 445, 655, 958, 1135, 1455
Bme1390I	CCNGG	9 cut(s)	215, 1035, 1058, 1124, 1125, 1242, 1412, 1413, 1739
Bme18I	GGWCC	2 cut(s)	62, 917
BmeT110I	CYCGRG	2 cut(s)	1123, 1411
BmgT120I	GGNCC	2 cut(s)	62, 917
BmiI	GGNNCC	2 cut(s)	429, 1726
BmrFI	CCNGG	9 cut(s)	215, 1035, 1058, 1124, 1125, 1242, 1412, 1413, 1739
BmsI	GCATC	7 cut(s)	257, 664, 1164, 1222, 1245, 1440, 1488
BpmI	CTGGAG	1 cut(s)	18
Bpu1102I	GCTNAGC	2 cut(s)	1118, 1209
Bpu14I	TTCGAA	3 cut(s)	310, 464, 1262
BpuEI	CTTGAG	1 cut(s)	1354
BpuMI	CCSGG	6 cut(s)	215, 1035, 1124, 1125, 1412, 1413
BsaJI	CCNNGG	4 cut(s)	1123, 1411, 1412, 1584
BsaWI	WCCGGW	1 cut(s)	1486
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 1188, 1218
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 366, 1129, 1161, 1413
Bse118I	RCCGGY	2 cut(s)	59, 167
Bse1I	ACTGG	1 cut(s)	637
BseBI	CCWGG	3 cut(s)	1058, 1242, 1739
BseDI	CCNNGG	4 cut(s)	1123, 1411, 1412, 1584
BseGI	GGATG	5 cut(s)	248, 784, 820, 1293, 1594
BseLI	CCNNNNNNNGG	5 cut(s)	214, 366, 1129, 1161, 1413
BseMII	CTCAG	5 cut(s)	365, 504, 677, 1200, 1674
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	2 cut(s)	125, 532
BseXI	GCAGC	2 cut(s)	135, 1145
BseYI	CCCAGC	1 cut(s)	971
BsgI	GTGCAG	1 cut(s)	1480
Bsh1236I	CGCG	1 cut(s)	793
BshFI	GGCC	3 cut(s)	353, 1245, 1598
BsiHKAI	GWGCWC	3 cut(s)	913, 967, 1047
BsiHKCI	CYCGRG	2 cut(s)	1123, 1411
BsiSI	CCGG	8 cut(s)	60, 168, 215, 623, 1034, 1124, 1412, 1487
BslFI	GGGAC	4 cut(s)	191, 757, 1390, 1429
BslI	CCNNNNNNNGG	5 cut(s)	214, 366, 1129, 1161, 1413
BsmAI	GTCTC	2 cut(s)	112, 370
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	4 cut(s)	191, 757, 1390, 1429
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	3 cut(s)	353, 1245, 1598
BsoBI	CYCGRG	2 cut(s)	1123, 1411
Bsp119I	TTCGAA	3 cut(s)	310, 464, 1262
Bsp1286I	GDGCHC	4 cut(s)	373, 913, 967, 1047
Bsp143I	GATC	5 cut(s)	113, 128, 345, 361, 1189
Bsp1720I	GCTNAGC	2 cut(s)	1118, 1209
BspACI	CCGC	9 cut(s)	23, 121, 317, 443, 611, 653, 956, 1453, 1456
BspANI	GGCC	3 cut(s)	353, 1245, 1598
BspCNI	CTCAG	5 cut(s)	366, 505, 676, 1201, 1673
BspFNI	CGCG	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	429, 1726
BspMI	ACCTGC	1 cut(s)	1271
BspPI	GGATC	1 cut(s)	121
BspT104I	TTCGAA	3 cut(s)	310, 464, 1262
BsrFI	RCCGGY	2 cut(s)	59, 167
BsrI	ACTGG	1 cut(s)	637
BssAI	RCCGGY	2 cut(s)	59, 167
BssECI	CCNNGG	4 cut(s)	1123, 1411, 1412, 1584
BssMI	GATC	5 cut(s)	113, 128, 345, 361, 1189
BssSI	CACGAG	1 cut(s)	912
BssT1I	CCWWGG	1 cut(s)	1584
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	3 cut(s)	1058, 1242, 1739
Bst4CI	ACNGT	4 cut(s)	934, 1049, 1204, 1547
Bst6I	CTCTTC	5 cut(s)	84, 200, 233, 287, 1512
BstAPI	GCANNNNNTGC	1 cut(s)	1475
BstBI	TTCGAA	3 cut(s)	310, 464, 1262
BstC8I	GCNNGC	7 cut(s)	160, 169, 355, 996, 1006, 1168, 1557
BstDEI	CTNAG	9 cut(s)	255, 365, 374, 513, 663, 1118, 1209, 1535, 1660
BstF5I	GGATG	5 cut(s)	248, 784, 820, 1293, 1594
BstFNI	CGCG	1 cut(s)	793
BstHHI	GCGC	2 cut(s)	359, 793
BstKTI	GATC	5 cut(s)	116, 131, 348, 364, 1192
BstMAI	GTCTC	2 cut(s)	112, 370
BstMBI	GATC	5 cut(s)	113, 128, 345, 361, 1189
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 164, 168, 953, 962, 1081, 1475
BstNI	CCWGG	3 cut(s)	1058, 1242, 1739
BstNSI	RCATGY	3 cut(s)	404, 763, 1367
BstSCI	CCNGG	9 cut(s)	213, 1033, 1056, 1122, 1123, 1240, 1410, 1411, 1737
BstSFI	CTRYAG	1 cut(s)	1351
BstUI	CGCG	1 cut(s)	793
BstV1I	GCAGC	2 cut(s)	135, 1145
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	1146
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	3 cut(s)	353, 1245, 1598
BtsCI	GGATG	5 cut(s)	248, 784, 820, 1293, 1594
BtsI	GCAGTG	1 cut(s)	1468
BtsIMutI	CAGTG	2 cut(s)	1468, 1552
BveI	ACCTGC	1 cut(s)	1271
Cac8I	GCNNGC	7 cut(s)	160, 169, 355, 996, 1006, 1168, 1557
CaiI	CAGNNNCTG	1 cut(s)	1208
CfoI	GCGC	2 cut(s)	359, 793
Cfr10I	RCCGGY	2 cut(s)	59, 167
Cfr13I	GGNCC	2 cut(s)	62, 917
Cfr9I	CCCGGG	2 cut(s)	1123, 1411
Csp6I	GTAC	2 cut(s)	553, 1356
CviQI	GTAC	2 cut(s)	553, 1356
DdeI	CTNAG	9 cut(s)	255, 365, 374, 513, 663, 1118, 1209, 1535, 1660
DpnI	GATC	5 cut(s)	115, 130, 347, 363, 1191
DpnII	GATC	5 cut(s)	113, 128, 345, 361, 1189
Eam1104I	CTCTTC	5 cut(s)	84, 200, 233, 287, 1512
EarI	CTCTTC	5 cut(s)	84, 200, 233, 287, 1512
Ecl136II	GAGCTC	1 cut(s)	911
Eco130I	CCWWGG	1 cut(s)	1584
Eco147I	AGGCCT	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	373, 913
Eco32I	GATATC	1 cut(s)	1541
Eco47I	GGWCC	2 cut(s)	62, 917
Eco53kI	GAGCTC	1 cut(s)	911
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	2 cut(s)	1123, 1411
EcoICRI	GAGCTC	1 cut(s)	911
EcoRII	CCWGG	3 cut(s)	1056, 1240, 1737
EcoRV	GATATC	1 cut(s)	1541
EcoT14I	CCWWGG	1 cut(s)	1584
EcoT22I	ATGCAT	3 cut(s)	1179, 1276, 1503
EcoT38I	GRGCYC	2 cut(s)	373, 913
ErhI	CCWWGG	1 cut(s)	1584
Esp3I	CGTCTC	1 cut(s)	112
FalI	AAGNNNNNCTT	4 cut(s)	248, 280, 1688, 1720
FaqI	GGGAC	4 cut(s)	191, 757, 1390, 1429
FauI	CCCGC	3 cut(s)	30, 324, 604
FauNDI	CATATG	2 cut(s)	1000, 1567
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	6 cut(s)	124, 444, 654, 957, 1134, 1454
FokI	GGATG	5 cut(s)	235, 791, 827, 1300, 1601
FriOI	GRGCYC	2 cut(s)	373, 913
Fsp4HI	GCNGC	6 cut(s)	124, 444, 654, 957, 1134, 1454
FspBI	CTAG	4 cut(s)	740, 768, 921, 977
GlaI	GCGC	2 cut(s)	358, 792
GluI	GCNGC	6 cut(s)	124, 444, 654, 957, 1134, 1454
GsaI	CCCAGC	1 cut(s)	975
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	353, 1245, 1598
HapII	CCGG	8 cut(s)	60, 168, 215, 623, 1034, 1124, 1412, 1487
HhaI	GCGC	2 cut(s)	359, 793
Hin6I	GCGC	2 cut(s)	357, 791
HinP1I	GCGC	2 cut(s)	357, 791
HindIII	AAGCTT	3 cut(s)	1330, 1553, 1697
HinfI	GANTC	5 cut(s)	175, 218, 378, 626, 1369
HpaII	CCGG	8 cut(s)	60, 168, 215, 623, 1034, 1124, 1412, 1487
HphI	GGTGA	5 cut(s)	110, 130, 203, 1476, 1604
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	6 cut(s)	72, 375, 427, 1196, 1374, 1622
Hpy188III	TCNNGA	6 cut(s)	111, 573, 640, 712, 1088, 1691
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	5 cut(s)	232, 487, 709, 980, 984
HpyCH4III	ACNGT	4 cut(s)	934, 1049, 1204, 1547
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 164, 168, 953, 962, 1081, 1475
HpyF3I	CTNAG	9 cut(s)	255, 365, 374, 513, 663, 1118, 1209, 1535, 1660
HspAI	GCGC	2 cut(s)	357, 791
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	113, 128, 345, 361, 1189
LmnI	GCTCC	6 cut(s)	23, 427, 889, 1042, 1141, 1730
Lsp1109I	GCAGC	2 cut(s)	135, 1145
LweI	GCATC	7 cut(s)	257, 664, 1164, 1222, 1245, 1440, 1488
MaeI	CTAG	4 cut(s)	740, 768, 921, 977
MaeIII	GTNAC	5 cut(s)	326, 854, 934, 1198, 1666
MalI	GATC	5 cut(s)	115, 130, 347, 363, 1191
MboI	GATC	5 cut(s)	113, 128, 345, 361, 1189
MboII	GAAGA	9 cut(s)	71, 187, 220, 274, 277, 1338, 1523, 1526, 1529
MfeI	CAATTG	1 cut(s)	1560
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	4 cut(s)	373, 913, 967, 1047
MluCI	AATT	5 cut(s)	232, 1425, 1445, 1560, 1652
MlyI	GAGTC	2 cut(s)	212, 372
MmeI	TCCRAC	2 cut(s)	405, 512
Mph1103I	ATGCAT	3 cut(s)	1179, 1276, 1503
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	3 cut(s)	594, 756, 1650
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	8 cut(s)	60, 168, 215, 623, 1034, 1124, 1412, 1487
MspR9I	CCNGG	9 cut(s)	215, 1035, 1058, 1124, 1125, 1242, 1412, 1413, 1739
MunI	CAATTG	1 cut(s)	1560
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	3 cut(s)	1058, 1242, 1739
MvnI	CGCG	1 cut(s)	793
MwoI	GCNNNNNNNGC	7 cut(s)	44, 164, 168, 953, 962, 1081, 1475
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	6 cut(s)	215, 1035, 1124, 1125, 1412, 1413
NdeI	CATATG	2 cut(s)	1000, 1567
NdeII	GATC	5 cut(s)	113, 128, 345, 361, 1189
NgoMIV	GCCGGC	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	429, 1726
NmeAIII	GCCGAG	2 cut(s)	282, 345
NmuCI	GTSAC	1 cut(s)	934
NsiI	ATGCAT	3 cut(s)	1179, 1276, 1503
NspI	RCATGY	3 cut(s)	404, 763, 1367
NspV	TTCGAA	3 cut(s)	310, 464, 1262
PceI	AGGCCT	1 cut(s)	353
PciI	ACATGT	3 cut(s)	400, 759, 1363
PcsI	WCGNNNNNNNCGW	1 cut(s)	578
PctI	GAATGC	1 cut(s)	394
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	175, 626, 1369
PkrI	GCNGC	6 cut(s)	125, 445, 655, 958, 1135, 1455
PleI	GAGTC	2 cut(s)	212, 372
PpsI	GAGTC	2 cut(s)	212, 372
PscI	ACATGT	3 cut(s)	400, 759, 1363
Psp124BI	GAGCTC	1 cut(s)	913
Psp6I	CCWGG	3 cut(s)	1056, 1240, 1737
PspFI	CCCAGC	1 cut(s)	971
PspGI	CCWGG	3 cut(s)	1056, 1240, 1737
PspN4I	GGNNCC	2 cut(s)	429, 1726
PspPI	GGNCC	2 cut(s)	62, 917
PstNI	CAGNNNCTG	1 cut(s)	1208
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	2 cut(s)	554, 1357
RsaNI	GTAC	2 cut(s)	553, 1356
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	913
SaqAI	TTAA	3 cut(s)	594, 756, 1650
SatI	GCNGC	6 cut(s)	124, 444, 654, 957, 1134, 1454
Sau3AI	GATC	5 cut(s)	113, 128, 345, 361, 1189
Sau96I	GGNCC	2 cut(s)	62, 917
SchI	GAGTC	2 cut(s)	212, 372
ScrFI	CCNGG	9 cut(s)	215, 1035, 1058, 1124, 1125, 1242, 1412, 1413, 1739
SduI	GDGCHC	4 cut(s)	373, 913, 967, 1047
SfaNI	GCATC	7 cut(s)	257, 664, 1164, 1222, 1245, 1440, 1488
SfcI	CTRYAG	1 cut(s)	1351
SfuI	TTCGAA	3 cut(s)	310, 464, 1262
SinI	GGWCC	2 cut(s)	62, 917
SmaI	CCCGGG	2 cut(s)	1125, 1413
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	1333
SmoI	CTYRAG	1 cut(s)	1333
Sse9I	AATT	5 cut(s)	232, 1425, 1445, 1560, 1652
SseBI	AGGCCT	1 cut(s)	353
SsiI	CCGC	9 cut(s)	23, 121, 317, 443, 611, 653, 956, 1453, 1456
SspMI	CTAG	4 cut(s)	740, 768, 921, 977
SstI	GAGCTC	1 cut(s)	913
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	9 cut(s)	213, 1033, 1056, 1122, 1123, 1240, 1410, 1411, 1737
StyI	CCWWGG	1 cut(s)	1584
TaaI	ACNGT	4 cut(s)	934, 1049, 1204, 1547
TasI	AATT	5 cut(s)	232, 1425, 1445, 1560, 1652
TatI	WGTACW	1 cut(s)	1355
TauI	GCSGC	4 cut(s)	446, 656, 959, 1456
TfiI	GAWTC	3 cut(s)	175, 626, 1369
Tru1I	TTAA	3 cut(s)	594, 756, 1650
Tru9I	TTAA	3 cut(s)	594, 756, 1650
TscAI	CASTG	2 cut(s)	1468, 1552
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	2 cut(s)	123, 1133
Tsp45I	GTSAC	1 cut(s)	934
TspGWI	ACGGA	1 cut(s)	193
TspMI	CCCGGG	2 cut(s)	1123, 1411
TspRI	CASTG	2 cut(s)	1468, 1552
VpaK11BI	GGWCC	2 cut(s)	62, 917
XapI	RAATTY	2 cut(s)	1425, 1652
XceI	RCATGY	3 cut(s)	404, 763, 1367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1718
XmaI	CCCGGG	2 cut(s)	1123, 1411
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	4 cut(s)	740, 768, 921, 977
Zsp2I	ATGCAT	3 cut(s)	1179, 1276, 1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.