Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006665

Physical Location & Seq

Genomic Coordinates Reverse (-)

5740451 .. 5741425

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAAACCAAACACAGCTCCCCGCCACAATCTCCAGCCTACAAAGCTCTACTCAGAGCCGGTCCAAATCTGAAGCCTCTTCAACAAGTCCACGCCCACATTATCGTCTCTGGATCTCACCGCAGCCGATCACTTTCACTCCTCACCAAGCTCATCACTCTGGCTTGCGAAGCCGGCTCGATTCTCTACACCCACAACCTCTTCCTCTCTGTCCCTCACCTGGACTCCTTCCTCTTCAATTCCATAATCAAAACATCCTCTAAGTTCGGCTTCCCGCAACACACTCTCTTCTTCTATCACTCCATGCTCGGCTTTCGAACCCCGCCGAGTAGTTACACCTGTACCTCTGTGATCAAGGCCTGCGCCGATCTAAGGGCTCTGAGGCTCGGTAGGGGTGTGCATTCACATGTAGTAGTGTGTGGGTGTGGGTGTGGGTCGGAACCGTTTGTTCAGGCGGCTCTTGTTAGCTTGCATTCAGAATGTGGCGAGTTTGGGGTTGCAAGCAAGGTGTTCGATGAAATGCCTGAGAGGAGTGTTGTGGGTTGGAACTCGATGATTTCGGGGTACGTGCAGAACGGGTTTTCGAGAGAGGCGATTGAGGTGTTTAATGAGATGAGGGAGGTGGGTGTTGAGCCGGATTCGACTGGTTTTGTGAATGTTTTGGCTGCGTGTTCTCAGTTGGGAGATGTTGGTTTAAGGAGTTCGGTGCATGATGAGGTTGTCAGCAAGAATATAGAAGTGAATGTGGCTCTAGGGACTTGGCTGATTAGCATGTATGCTAGGTGTGGGAATGTGAGCAAAGCGCAAGAAGTTTTCGATTGTATGGATGAAAGGAATGTTATTACTTGGACTGCTATGATTTCGGGGCACGCAACGAATGGTTGTGGTAGTCAAGCTATGGAGCTTCTTCGAGAAATGAGAGCTCGTGGTCCAAGTCCTAACACCGTGACGTTTGTGGCAGTCTTGGCGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

325

Amino Acids

35.11

Weight (kDa)

7.19

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	178 - 221	5.4e-11	PPR repeat family
PPR_3	PF13812	178 - 224	6.9e-06	Pentatricopeptide repeat domain
PPR	PF01535	182 - 210	6.8e-10	PPR repeat
PPR_2	PF13041	278 - 322	3.3e-10	PPR repeat family
PPR	PF01535	281 - 310	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33760
fragaria_vesca	FvH4_4g05520
malus_domestica	MD10G1295100.v1.1
prunus_persica	Prupe.4G047100_v2.0.a1
pyrus_communis	pycom10g24690
rosa_chinensis	RchiOBHm_Chr5g0008361
rosa_laevigata	RLG00000031504 RLG00000031508 RLG00000031509 RLG00000031512 RLG00000031518 RLG00000031519 RLG00000031564
rosa_multiflora	Rmu_sc0008805.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055520 Rroxscaffold_1G00068130 Rroxscaffold_1G00068520
rosa_rugosa	Rorug04G0435500
rosa_samantha	Rh5AG059900 Rh5AG060000 Rh5AG064000 Rh5BG060900 Rh5CG070900 Rh6CG126900
rosa_wichuraiana	Rw5G005700 Rw5G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	23, 121, 275, 323, 455, 968
AclWI	GGATC	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	343, 566
AfiI	CCNNNNNNNGG	2 cut(s)	220, 372
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	83, 238
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	7 cut(s)	18, 47, 151, 468, 896, 904, 923
AluI	AGCT	7 cut(s)	18, 47, 151, 468, 896, 904, 923
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	123, 665
AspLEI	GCGC	2 cut(s)	365, 805
AspS9I	GGNCC	2 cut(s)	62, 929
AsuHPI	GGTGA	3 cut(s)	110, 136, 209
AsuII	TTCGAA	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	62, 929
BaeGI	GKGCMC	1 cut(s)	870
BaeI	ACNNNNGTAYC	2 cut(s)	325, 358
BanII	GRGCYC	2 cut(s)	379, 925
BauI	CACGAG	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	925
BbvI	GCAGC	2 cut(s)	135, 652
BcgI	CGANNNNNNTGC	2 cut(s)	493, 527
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	3 cut(s)	752, 780, 973
BisI	GCNGC	3 cut(s)	124, 456, 666
BlsI	GCNGC	3 cut(s)	125, 457, 667
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	2 cut(s)	62, 929
BmgT120I	GGNCC	2 cut(s)	62, 929
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	568
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 372
Bse118I	RCCGGY	2 cut(s)	59, 173
Bse1I	ACTGG	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	254, 832
BseLI	CCNNNNNNNGG	2 cut(s)	220, 372
BseMII	CTCAG	4 cut(s)	67, 371, 516, 689
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	2 cut(s)	131, 544
BseSI	GKGCMC	1 cut(s)	870
BseXI	GCAGC	2 cut(s)	135, 652
BsgI	GTGCAG	1 cut(s)	590
BshFI	GGCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	925
BsiSI	CCGG	3 cut(s)	60, 174, 635
BslFI	GGGAC	2 cut(s)	197, 769
BslI	CCNNNNNNNGG	2 cut(s)	220, 372
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	197, 769
BsmI	GAATGC	2 cut(s)	400, 472
BsnI	GGCC	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1286I	GDGCHC	3 cut(s)	379, 870, 925
Bsp143I	GATC	4 cut(s)	113, 128, 351, 367
BspACI	CCGC	6 cut(s)	23, 121, 275, 323, 455, 968
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	4 cut(s)	66, 372, 517, 688
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	316
BsrFI	RCCGGY	2 cut(s)	59, 173
BsrI	ACTGG	1 cut(s)	649
BssAI	RCCGGY	2 cut(s)	59, 173
BssMI	GATC	4 cut(s)	113, 128, 351, 367
BssSI	CACGAG	1 cut(s)	924
Bst2BI	CACGAG	1 cut(s)	924
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	444, 946
Bst6I	CTCTTC	4 cut(s)	84, 206, 239, 293
BstBAI	YACGTR	1 cut(s)	568
BstBI	TTCGAA	1 cut(s)	316
BstC8I	GCNNGC	7 cut(s)	166, 175, 361, 470, 502, 870, 970
BstDEI	CTNAG	6 cut(s)	53, 261, 371, 380, 525, 675
BstF5I	GGATG	2 cut(s)	254, 832
BstHHI	GCGC	2 cut(s)	365, 805
BstKTI	GATC	4 cut(s)	116, 131, 354, 370
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	4 cut(s)	113, 128, 351, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 170, 174, 965
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	2 cut(s)	410, 775
BstSCI	CCNGG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	870
BstV1I	GCAGC	2 cut(s)	135, 652
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	254, 832
Cac8I	GCNNGC	7 cut(s)	166, 175, 361, 470, 502, 870, 970
CfoI	GCGC	2 cut(s)	365, 805
Cfr10I	RCCGGY	2 cut(s)	59, 173
Cfr13I	GGNCC	2 cut(s)	62, 929
Csp6I	GTAC	2 cut(s)	342, 565
CviAII	CATG	4 cut(s)	304, 407, 710, 772
CviQI	GTAC	2 cut(s)	342, 565
DdeI	CTNAG	6 cut(s)	53, 261, 371, 380, 525, 675
DpnI	GATC	4 cut(s)	115, 130, 353, 369
DpnII	GATC	4 cut(s)	113, 128, 351, 367
Eam1104I	CTCTTC	4 cut(s)	84, 206, 239, 293
EarI	CTCTTC	4 cut(s)	84, 206, 239, 293
Ecl136II	GAGCTC	1 cut(s)	923
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	379, 925
Eco47I	GGWCC	2 cut(s)	62, 929
Eco53kI	GAGCTC	1 cut(s)	923
Eco57I	CTGAAG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	923
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	2 cut(s)	379, 925
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	4 cut(s)	307, 410, 713, 775
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	2 cut(s)	197, 769
FatI	CATG	4 cut(s)	303, 406, 709, 771
FauI	CCCGC	4 cut(s)	30, 282, 330, 961
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	124, 456, 666
FokI	GGATG	2 cut(s)	241, 839
FriOI	GRGCYC	2 cut(s)	379, 925
Fsp4HI	GCNGC	3 cut(s)	124, 456, 666
FspBI	CTAG	3 cut(s)	752, 780, 973
GlaI	GCGC	2 cut(s)	364, 804
GluI	GCNGC	3 cut(s)	124, 456, 666
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	3 cut(s)	60, 174, 635
HhaI	GCGC	2 cut(s)	365, 805
Hin1II	CATG	4 cut(s)	307, 410, 713, 775
Hin6I	GCGC	2 cut(s)	363, 803
HinP1I	GCGC	2 cut(s)	363, 803
HinfI	GANTC	3 cut(s)	181, 224, 638
HpaII	CCGG	3 cut(s)	60, 174, 635
HphI	GGTGA	3 cut(s)	110, 136, 209
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	5 cut(s)	56, 72, 381, 439, 478
Hpy188III	TCNNGA	3 cut(s)	111, 585, 911
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	444, 946
HpyCH4IV	ACGT	2 cut(s)	567, 950
HpyCH4V	TGCA	5 cut(s)	400, 472, 500, 571, 709
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 170, 174, 965
HpyF3I	CTNAG	6 cut(s)	53, 261, 371, 380, 525, 675
HpySE526I	ACGT	2 cut(s)	567, 950
Hsp92II	CATG	4 cut(s)	307, 410, 713, 775
HspAI	GCGC	2 cut(s)	363, 803
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	4 cut(s)	113, 128, 351, 367
LmnI	GCTCC	2 cut(s)	23, 901
Lsp1109I	GCAGC	2 cut(s)	135, 652
MaeI	CTAG	3 cut(s)	752, 780, 973
MaeII	ACGT	2 cut(s)	567, 950
MaeIII	GTNAC	2 cut(s)	332, 946
MalI	GATC	4 cut(s)	115, 130, 353, 369
MboI	GATC	4 cut(s)	113, 128, 351, 367
MboII	GAAGA	6 cut(s)	71, 193, 226, 280, 283, 899
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	3 cut(s)	379, 870, 925
MluCI	AATT	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	417, 524
MroNI	GCCGGC	1 cut(s)	173
MseI	TTAA	2 cut(s)	606, 695
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	3 cut(s)	60, 174, 635
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	2 cut(s)	400, 472
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	4 cut(s)	44, 170, 174, 965
NaeI	GCCGGC	1 cut(s)	175
NdeII	GATC	4 cut(s)	113, 128, 351, 367
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	4 cut(s)	307, 410, 713, 775
NlaIV	GGNNCC	1 cut(s)	441
NmeAIII	GCCGAG	2 cut(s)	288, 351
NmuCI	GTSAC	1 cut(s)	946
NspI	RCATGY	2 cut(s)	410, 775
NspV	TTCGAA	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	359
PciI	ACATGT	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PctI	GAATGC	2 cut(s)	400, 472
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	181, 638
PkrI	GCNGC	3 cut(s)	125, 457, 667
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	568
PscI	ACATGT	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	925
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	62, 929
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	2 cut(s)	343, 566
RsaNI	GTAC	2 cut(s)	342, 565
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	925
SaqAI	TTAA	2 cut(s)	606, 695
SatI	GCNGC	3 cut(s)	124, 456, 666
Sau3AI	GATC	4 cut(s)	113, 128, 351, 367
Sau96I	GGNCC	2 cut(s)	62, 929
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	3 cut(s)	379, 870, 925
SfuI	TTCGAA	1 cut(s)	316
SinI	GGWCC	2 cut(s)	62, 929
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	238
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	6 cut(s)	23, 121, 275, 323, 455, 968
SspMI	CTAG	3 cut(s)	752, 780, 973
SstI	GAGCTC	1 cut(s)	925
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	444, 946
TaiI	ACGT	2 cut(s)	570, 953
TaqI	TCGA	8 cut(s)	179, 316, 513, 551, 584, 641, 816, 910
TasI	AATT	1 cut(s)	238
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	181, 638
Tru1I	TTAA	2 cut(s)	606, 695
Tru9I	TTAA	2 cut(s)	606, 695
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	2 cut(s)	123, 665
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	2 cut(s)	531, 843
VpaK11BI	GGWCC	2 cut(s)	62, 929
XceI	RCATGY	2 cut(s)	410, 775
XspI	CTAG	3 cut(s)	752, 780, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.