Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Xan_ur_permease | PF00860 | 40 - 443 | 1.6e-65 | Permease family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 738 |
| AarI | CACCTGC | 1 cut(s) | 970 |
| Acc16I | TGCGCA | 1 cut(s) | 644 |
| Acc36I | ACCTGC | 3 cut(s) | 304, 970, 1220 |
| AccII | CGCG | 1 cut(s) | 978 |
| AciI | CCGC | 3 cut(s) | 26, 729, 978 |
| AclWI | GGATC | 2 cut(s) | 223, 1045 |
| AcsI | RAATTY | 4 cut(s) | 389, 1107, 1148, 1277 |
| AcuI | CTGAAG | 2 cut(s) | 1229, 1578 |
| AfaI | GTAC | 1 cut(s) | 626 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 197 |
| AgsI | TTSAA | 5 cut(s) | 1055, 1314, 1330, 1387, 1573 |
| AjnI | CCWGG | 2 cut(s) | 381, 414 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 322, 354 |
| AluBI | AGCT | 9 cut(s) | 43, 70, 550, 842, 866, 1073, 1119, 1157, 1239 |
| AluI | AGCT | 9 cut(s) | 43, 70, 550, 842, 866, 1073, 1119, 1157, 1239 |
| Alw21I | GWGCWC | 3 cut(s) | 424, 844, 1368 |
| Alw26I | GTCTC | 1 cut(s) | 644 |
| Alw44I | GTGCAC | 2 cut(s) | 420, 1364 |
| AlwI | GGATC | 2 cut(s) | 223, 1045 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1049 |
| Ama87I | CYCGRG | 1 cut(s) | 1080 |
| AoxI | GGCC | 3 cut(s) | 110, 466, 1306 |
| ApaLI | GTGCAC | 2 cut(s) | 420, 1364 |
| ApeKI | GCWGC | 3 cut(s) | 268, 800, 1190 |
| ApoI | RAATTY | 4 cut(s) | 389, 1107, 1148, 1277 |
| AspLEI | GCGC | 2 cut(s) | 477, 645 |
| AspS9I | GGNCC | 2 cut(s) | 1306, 1358 |
| AsuHPI | GGTGA | 2 cut(s) | 160, 700 |
| AvaI | CYCGRG | 1 cut(s) | 1080 |
| AvaII | GGWCC | 1 cut(s) | 1358 |
| AxyI | CCTNAGG | 1 cut(s) | 114 |
| BaeGI | GKGCMC | 2 cut(s) | 424, 1368 |
| BanII | GRGCYC | 1 cut(s) | 844 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1190, 1222 |
| Bbv12I | GWGCWC | 3 cut(s) | 424, 844, 1368 |
| BbvI | GCAGC | 3 cut(s) | 280, 787, 1202 |
| BccI | CCATC | 2 cut(s) | 190, 1374 |
| BciT130I | CCWGG | 2 cut(s) | 383, 416 |
| BclI | TGATCA | 1 cut(s) | 1395 |
| BcoDI | GTCTC | 1 cut(s) | 644 |
| BfmI | CTRYAG | 3 cut(s) | 44, 297, 443 |
| BfuAI | ACCTGC | 3 cut(s) | 304, 970, 1220 |
| BisI | GCNGC | 3 cut(s) | 269, 801, 1191 |
| BlpI | GCTNAGC | 1 cut(s) | 1225 |
| BlsI | GCNGC | 3 cut(s) | 270, 802, 1192 |
| Bme1390I | CCNGG | 2 cut(s) | 383, 416 |
| Bme18I | GGWCC | 1 cut(s) | 1358 |
| BmeT110I | CYCGRG | 1 cut(s) | 1080 |
| BmgT120I | GGNCC | 2 cut(s) | 1306, 1358 |
| BmiI | GGNNCC | 3 cut(s) | 412, 491, 1419 |
| BmrFI | CCNGG | 2 cut(s) | 383, 416 |
| BmrI | ACTGGG | 1 cut(s) | 1038 |
| BmsI | GCATC | 7 cut(s) | 141, 320, 630, 798, 844, 1421, 1474 |
| BmuI | ACTGGG | 1 cut(s) | 1038 |
| BoxI | GACNNNNGTC | 1 cut(s) | 656 |
| BpmI | CTGGAG | 1 cut(s) | 879 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1225 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1522 |
| BsaJI | CCNNGG | 5 cut(s) | 107, 381, 414, 415, 806 |
| BsaWI | WCCGGW | 1 cut(s) | 1360 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 85, 115 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 197 |
| Bse1I | ACTGG | 4 cut(s) | 56, 96, 916, 1033 |
| Bse21I | CCTNAGG | 1 cut(s) | 114 |
| Bse3DI | GCAATG | 4 cut(s) | 263, 484, 879, 1200 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1522 |
| BseBI | CCWGG | 2 cut(s) | 383, 416 |
| BseDI | CCNNGG | 5 cut(s) | 107, 381, 414, 415, 806 |
| BseGI | GGATG | 2 cut(s) | 52, 600 |
| BseJI | GATNNNNATC | 1 cut(s) | 1522 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 197 |
| BseMI | GCAATG | 4 cut(s) | 263, 484, 879, 1200 |
| BseMII | CTCAG | 4 cut(s) | 105, 206, 773, 1239 |
| BseNI | ACTGG | 4 cut(s) | 56, 96, 916, 1033 |
| BseRI | GAGGAG | 5 cut(s) | 53, 93, 216, 227, 1565 |
| BseSI | GKGCMC | 2 cut(s) | 424, 1368 |
| BseXI | GCAGC | 3 cut(s) | 280, 787, 1202 |
| Bsh1236I | CGCG | 1 cut(s) | 978 |
| BshFI | GGCC | 3 cut(s) | 112, 468, 1308 |
| BsiHKAI | GWGCWC | 3 cut(s) | 424, 844, 1368 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1080 |
| BsiSI | CCGG | 1 cut(s) | 1361 |
| BslFI | GGGAC | 3 cut(s) | 298, 311, 1526 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 197 |
| BsmAI | GTCTC | 1 cut(s) | 644 |
| BsmBI | CGTCTC | 1 cut(s) | 644 |
| BsmFI | GGGAC | 3 cut(s) | 298, 311, 1526 |
| BsmI | GAATGC | 1 cut(s) | 1002 |
| BsnI | GGCC | 3 cut(s) | 112, 468, 1308 |
| BsoBI | CYCGRG | 1 cut(s) | 1080 |
| Bsp1286I | GDGCHC | 3 cut(s) | 424, 844, 1368 |
| Bsp143I | GATC | 8 cut(s) | 64, 228, 664, 778, 1037, 1125, 1395, 1523 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1225 |
| Bsp19I | CCATGG | 1 cut(s) | 806 |
| BspACI | CCGC | 3 cut(s) | 26, 729, 978 |
| BspANI | GGCC | 3 cut(s) | 112, 468, 1308 |
| BspCNI | CTCAG | 4 cut(s) | 106, 205, 772, 1238 |
| BspFNI | CGCG | 1 cut(s) | 978 |
| BspHI | TCATGA | 1 cut(s) | 1122 |
| BspLI | GGNNCC | 3 cut(s) | 412, 491, 1419 |
| BspMAI | CTGCAG | 2 cut(s) | 301, 447 |
| BspMI | ACCTGC | 3 cut(s) | 304, 970, 1220 |
| BspPI | GGATC | 2 cut(s) | 223, 1045 |
| BsrDI | GCAATG | 4 cut(s) | 263, 484, 879, 1200 |
| BsrI | ACTGG | 4 cut(s) | 56, 96, 916, 1033 |
| BssECI | CCNNGG | 5 cut(s) | 107, 381, 414, 415, 806 |
| BssMI | GATC | 8 cut(s) | 64, 228, 664, 778, 1037, 1125, 1395, 1523 |
| BssT1I | CCWWGG | 2 cut(s) | 107, 806 |
| Bst2UI | CCWGG | 2 cut(s) | 383, 416 |
| Bst4CI | ACNGT | 6 cut(s) | 243, 511, 624, 724, 1265, 1478 |
| BstC8I | GCNNGC | 4 cut(s) | 787, 1117, 1241, 1502 |
| BstDEI | CTNAG | 5 cut(s) | 114, 192, 759, 1225, 1235 |
| BstDSI | CCRYGG | 1 cut(s) | 806 |
| BstF5I | GGATG | 2 cut(s) | 52, 600 |
| BstFNI | CGCG | 1 cut(s) | 978 |
| BstHHI | GCGC | 2 cut(s) | 477, 645 |
| BstKTI | GATC | 8 cut(s) | 67, 231, 667, 781, 1040, 1128, 1398, 1526 |
| BstMAI | GTCTC | 1 cut(s) | 644 |
| BstMBI | GATC | 8 cut(s) | 64, 228, 664, 778, 1037, 1125, 1395, 1523 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 474, 547, 863, 1163 |
| BstNI | CCWGG | 2 cut(s) | 383, 416 |
| BstNSI | RCATGY | 3 cut(s) | 20, 659, 800 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 656 |
| BstSCI | CCNGG | 2 cut(s) | 381, 414 |
| BstSFI | CTRYAG | 3 cut(s) | 44, 297, 443 |
| BstSLI | GKGCMC | 2 cut(s) | 424, 1368 |
| BstUI | CGCG | 1 cut(s) | 978 |
| BstV1I | GCAGC | 3 cut(s) | 280, 787, 1202 |
| Bsu36I | CCTNAGG | 1 cut(s) | 114 |
| BsuRI | GGCC | 3 cut(s) | 112, 468, 1308 |
| BtgI | CCRYGG | 1 cut(s) | 806 |
| BtsCI | GGATG | 2 cut(s) | 52, 600 |
| BtsI | GCAGTG | 2 cut(s) | 652, 1460 |
| BtsIMutI | CAGTG | 8 cut(s) | 469, 652, 720, 909, 1026, 1460, 1483, 1602 |
| BveI | ACCTGC | 3 cut(s) | 304, 970, 1220 |
| Cac8I | GCNNGC | 4 cut(s) | 787, 1117, 1241, 1502 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1049 |
| CciI | TCATGA | 1 cut(s) | 1122 |
| CfoI | GCGC | 2 cut(s) | 477, 645 |
| Cfr13I | GGNCC | 2 cut(s) | 1306, 1358 |
| CseI | GACGC | 1 cut(s) | 661 |
| Csp6I | GTAC | 1 cut(s) | 625 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 166, 201, 558, 593 |
| CviAII | CATG | 7 cut(s) | 17, 656, 797, 807, 1123, 1303, 1393 |
| CviQI | GTAC | 1 cut(s) | 625 |
| DdeI | CTNAG | 5 cut(s) | 114, 192, 759, 1225, 1235 |
| DpnI | GATC | 8 cut(s) | 66, 230, 666, 780, 1039, 1127, 1397, 1525 |
| DpnII | GATC | 8 cut(s) | 64, 228, 664, 778, 1037, 1125, 1395, 1523 |
| Ecl136II | GAGCTC | 1 cut(s) | 842 |
| Eco130I | CCWWGG | 2 cut(s) | 107, 806 |
| Eco24I | GRGCYC | 1 cut(s) | 844 |
| Eco47I | GGWCC | 1 cut(s) | 1358 |
| Eco53kI | GAGCTC | 1 cut(s) | 842 |
| Eco57I | CTGAAG | 2 cut(s) | 1229, 1578 |
| Eco81I | CCTNAGG | 1 cut(s) | 114 |
| Eco88I | CYCGRG | 1 cut(s) | 1080 |
| EcoICRI | GAGCTC | 1 cut(s) | 842 |
| EcoRII | CCWGG | 2 cut(s) | 381, 414 |
| EcoT14I | CCWWGG | 2 cut(s) | 107, 806 |
| EcoT38I | GRGCYC | 1 cut(s) | 844 |
| ErhI | CCWWGG | 2 cut(s) | 107, 806 |
| Esp3I | CGTCTC | 1 cut(s) | 644 |
| FaeI | CATG | 7 cut(s) | 20, 659, 800, 810, 1126, 1306, 1396 |
| FaqI | GGGAC | 3 cut(s) | 298, 311, 1526 |
| FatI | CATG | 7 cut(s) | 16, 655, 796, 806, 1122, 1302, 1392 |
| FauI | CCCGC | 1 cut(s) | 722 |
| FbaI | TGATCA | 1 cut(s) | 1395 |
| Fnu4HI | GCNGC | 3 cut(s) | 269, 801, 1191 |
| FokI | GGATG | 2 cut(s) | 39, 587 |
| FriOI | GRGCYC | 1 cut(s) | 844 |
| Fsp4HI | GCNGC | 3 cut(s) | 269, 801, 1191 |
| FspI | TGCGCA | 1 cut(s) | 644 |
| GlaI | GCGC | 2 cut(s) | 476, 644 |
| GluI | GCNGC | 3 cut(s) | 269, 801, 1191 |
| GsuI | CTGGAG | 1 cut(s) | 879 |
| HaeIII | GGCC | 3 cut(s) | 112, 468, 1308 |
| HapII | CCGG | 1 cut(s) | 1361 |
| HgaI | GACGC | 1 cut(s) | 661 |
| HhaI | GCGC | 2 cut(s) | 477, 645 |
| Hin1II | CATG | 7 cut(s) | 20, 659, 800, 810, 1126, 1306, 1396 |
| Hin6I | GCGC | 2 cut(s) | 475, 643 |
| HinP1I | GCGC | 2 cut(s) | 475, 643 |
| HincII | GTYRAC | 1 cut(s) | 765 |
| HindII | GTYRAC | 1 cut(s) | 765 |
| HindIII | AAGCTT | 1 cut(s) | 864 |
| HinfI | GANTC | 6 cut(s) | 255, 286, 376, 905, 1078, 1518 |
| HpaI | GTTAAC | 1 cut(s) | 765 |
| HpaII | CCGG | 1 cut(s) | 1361 |
| HphI | GGTGA | 2 cut(s) | 160, 700 |
| Hpy166II | GTNNAC | 7 cut(s) | 14, 293, 422, 500, 765, 909, 1366 |
| Hpy188I | TCNGA | 4 cut(s) | 195, 639, 1417, 1523 |
| Hpy188III | TCNNGA | 5 cut(s) | 232, 394, 1123, 1270, 1451 |
| Hpy8I | GTNNAC | 7 cut(s) | 14, 293, 422, 500, 765, 909, 1366 |
| Hpy99I | CGWCG | 1 cut(s) | 1486 |
| HpyAV | CCTTC | 3 cut(s) | 614, 1089, 1602 |
| HpyCH4III | ACNGT | 6 cut(s) | 243, 511, 624, 724, 1265, 1478 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 474, 547, 863, 1163 |
| HpyF3I | CTNAG | 5 cut(s) | 114, 192, 759, 1225, 1235 |
| Hsp92II | CATG | 7 cut(s) | 20, 659, 800, 810, 1126, 1306, 1396 |
| HspAI | GCGC | 2 cut(s) | 475, 643 |
| Ksp22I | TGATCA | 1 cut(s) | 1395 |
| KspAI | GTTAAC | 1 cut(s) | 765 |
| Kzo9I | GATC | 8 cut(s) | 64, 228, 664, 778, 1037, 1125, 1395, 1523 |
| LmnI | GCTCC | 8 cut(s) | 40, 308, 808, 839, 847, 1154, 1373, 1417 |
| Lsp1109I | GCAGC | 3 cut(s) | 280, 787, 1202 |
| LweI | GCATC | 7 cut(s) | 141, 320, 630, 798, 844, 1421, 1474 |
| MaeIII | GTNAC | 1 cut(s) | 688 |
| MalI | GATC | 8 cut(s) | 66, 230, 666, 780, 1039, 1127, 1397, 1525 |
| MboI | GATC | 8 cut(s) | 64, 228, 664, 778, 1037, 1125, 1395, 1523 |
| MboII | GAAGA | 3 cut(s) | 1120, 1198, 1201 |
| MfeI | CAATTG | 1 cut(s) | 693 |
| MhlI | GDGCHC | 3 cut(s) | 424, 844, 1368 |
| MluCI | AATT | 7 cut(s) | 303, 389, 693, 1107, 1148, 1277, 1296 |
| MlyI | GAGTC | 3 cut(s) | 280, 914, 1072 |
| MmeI | TCCRAC | 1 cut(s) | 160 |
| MseI | TTAA | 3 cut(s) | 764, 971, 1347 |
| MspI | CCGG | 1 cut(s) | 1361 |
| MspR9I | CCNGG | 2 cut(s) | 383, 416 |
| MunI | CAATTG | 1 cut(s) | 693 |
| Mva1269I | GAATGC | 1 cut(s) | 1002 |
| MvaI | CCWGG | 2 cut(s) | 383, 416 |
| MvnI | CGCG | 1 cut(s) | 978 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 474, 547, 863, 1163 |
| NcoI | CCATGG | 1 cut(s) | 806 |
| NdeII | GATC | 8 cut(s) | 64, 228, 664, 778, 1037, 1125, 1395, 1523 |
| NlaIII | CATG | 7 cut(s) | 20, 659, 800, 810, 1126, 1306, 1396 |
| NlaIV | GGNNCC | 3 cut(s) | 412, 491, 1419 |
| NmuCI | GTSAC | 1 cut(s) | 688 |
| NsbI | TGCGCA | 1 cut(s) | 644 |
| NspI | RCATGY | 3 cut(s) | 20, 659, 800 |
| PaeR7I | CTCGAG | 1 cut(s) | 1080 |
| PagI | TCATGA | 1 cut(s) | 1122 |
| PaqCI | CACCTGC | 1 cut(s) | 970 |
| PasI | CCCWGGG | 1 cut(s) | 415 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 778 |
| PctI | GAATGC | 1 cut(s) | 1002 |
| PfeI | GAWTC | 3 cut(s) | 255, 376, 1518 |
| PkrI | GCNGC | 3 cut(s) | 270, 802, 1192 |
| PleI | GAGTC | 3 cut(s) | 280, 913, 1072 |
| PpsI | GAGTC | 3 cut(s) | 280, 913, 1072 |
| PshAI | GACNNNNGTC | 1 cut(s) | 656 |
| PsiI | TTATAA | 1 cut(s) | 738 |
| Psp124BI | GAGCTC | 1 cut(s) | 844 |
| Psp6I | CCWGG | 2 cut(s) | 381, 414 |
| PspGI | CCWGG | 2 cut(s) | 381, 414 |
| PspN4I | GGNNCC | 3 cut(s) | 412, 491, 1419 |
| PspPI | GGNCC | 2 cut(s) | 1306, 1358 |
| PspXI | VCTCGAGB | 1 cut(s) | 1080 |
| PstI | CTGCAG | 2 cut(s) | 301, 447 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1049 |
| RsaI | GTAC | 1 cut(s) | 626 |
| RsaNI | GTAC | 1 cut(s) | 625 |
| SacI | GAGCTC | 1 cut(s) | 844 |
| SaqAI | TTAA | 3 cut(s) | 764, 971, 1347 |
| SatI | GCNGC | 3 cut(s) | 269, 801, 1191 |
| Sau3AI | GATC | 8 cut(s) | 64, 228, 664, 778, 1037, 1125, 1395, 1523 |
| Sau96I | GGNCC | 2 cut(s) | 1306, 1358 |
| SchI | GAGTC | 3 cut(s) | 280, 914, 1072 |
| ScrFI | CCNGG | 2 cut(s) | 383, 416 |
| SduI | GDGCHC | 3 cut(s) | 424, 844, 1368 |
| SfaNI | GCATC | 7 cut(s) | 141, 320, 630, 798, 844, 1421, 1474 |
| SfcI | CTRYAG | 3 cut(s) | 44, 297, 443 |
| Sfr274I | CTCGAG | 1 cut(s) | 1080 |
| SinI | GGWCC | 1 cut(s) | 1358 |
| SlaI | CTCGAG | 1 cut(s) | 1080 |
| SmlI | CTYRAG | 1 cut(s) | 1080 |
| SmoI | CTYRAG | 1 cut(s) | 1080 |
| Sse9I | AATT | 7 cut(s) | 303, 389, 693, 1107, 1148, 1277, 1296 |
| SsiI | CCGC | 3 cut(s) | 26, 729, 978 |
| SspI | AATATT | 1 cut(s) | 1325 |
| SstI | GAGCTC | 1 cut(s) | 844 |
| StyD4I | CCNGG | 2 cut(s) | 381, 414 |
| StyI | CCWWGG | 2 cut(s) | 107, 806 |
| TaaI | ACNGT | 6 cut(s) | 243, 511, 624, 724, 1265, 1478 |
| TaqI | TCGA | 7 cut(s) | 358, 393, 772, 932, 1081, 1169, 1468 |
| TasI | AATT | 7 cut(s) | 303, 389, 693, 1107, 1148, 1277, 1296 |
| TatI | WGTACW | 1 cut(s) | 624 |
| TfiI | GAWTC | 3 cut(s) | 255, 376, 1518 |
| Tru1I | TTAA | 3 cut(s) | 764, 971, 1347 |
| Tru9I | TTAA | 3 cut(s) | 764, 971, 1347 |
| TscAI | CASTG | 8 cut(s) | 469, 652, 727, 916, 1033, 1467, 1483, 1602 |
| TseFI | GTSAC | 1 cut(s) | 688 |
| TseI | GCWGC | 3 cut(s) | 268, 800, 1190 |
| Tsp45I | GTSAC | 1 cut(s) | 688 |
| TspDTI | ATGAA | 4 cut(s) | 876, 1111, 1291, 1347 |
| TspRI | CASTG | 8 cut(s) | 469, 652, 727, 916, 1033, 1467, 1483, 1602 |
| VneI | GTGCAC | 2 cut(s) | 420, 1364 |
| VpaK11BI | GGWCC | 1 cut(s) | 1358 |
| XapI | RAATTY | 4 cut(s) | 389, 1107, 1148, 1277 |
| XceI | RCATGY | 3 cut(s) | 20, 659, 800 |
| XhoI | CTCGAG | 1 cut(s) | 1080 |