Rroxscaffold_1G00046070

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000420
Physical Location & Seq
Forward (+)
65211634 .. 65213872
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046070.1

Sequence Viewer

Length: 942 bp
ATGAGGCCTGGTCCAAAGCTCTCTGTGTCGCAGCATATAGGTTCCGCCAATTGTACCACAACAATTTTTTCACTGGTTTTTGCTGCGCAGAAAATAAATTTAGTTATATCAATTGGAAAAGCCTTCATTCGACACATCAAGGATGGACCAGATCATTGCAGTGAGTTCTACCAACACCTCCATAATCTACCACTACAAGTCTACAAGGAGTTGGTCTGTCATTGCATCCGGTCTGCATCAAATCCTCCTCAACCAAGTTCAGTAAGCTTTTTCCTAACAGGGTTCTGGTCAGAATCTTCTGGGAAGCTTTGTATGGTGGGATCAGGTTCTATGAAATCTGAAAAACATAATTCTCTTAATGTTCCTGCTGTTCTTAAACTCTATAATCTCTTCAATTTCACTACCATTACAAGTTTGATTAGTGGAACCTTAGAAAGTTTGATAAGTTCAGAGTATGATCCTGATAATTTTGAACCAGTCTCTATTTTGATGCTTCCTCGTATGAACTACAAGTACATTTTGGTTCCAAATGAATCTGATAACAGTTGTGCTAGCAGTGGAAGTGATGTTCCCCTCAGTTCTTTGCCAACATGGAGATTTTTTTCTGAACTCTCAACAGCAGTAAGCAATGAATTTGATCTAAAATATTCGAGCCATTACATTTCTGCAACAAACTGTAGTCCATTCCCAGTGTCCAGTCTGCCTTTTGTTGTGTTGTTGAAGAGTATTGGGTGTTCAGAGGACACAAGAAGTTTAAGAGTTCTGGTAATATTTGCAGACAGTAACAATGTCTGGTACCAGAGGCCTTTCAATCCCAATACCACCTTGGTTGGAGAAGGGTCATGGGATGCAAAGAAAACTCAGCTACAAGTTGCTGCTTGTCGATTTTTGAATGGAGCAGACTCGTTGACAAATAGTATTCATGTGGGTGACGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

313

Amino Acids

34.5

Weight (kDa)

6.74

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 76 - 161 2.6e-17 DUF2921 lipocalin-like domain
DUF2921_N PF25333 215 - 306 4.7e-07 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 87
Acc65I GGTACC 1 cut(s) 795
AccB1I GGYRCC 1 cut(s) 795
AccI GTMKAC 1 cut(s) 201
AciI CCGC 1 cut(s) 45
AclWI GGATC 2 cut(s) 328, 452
AcsI RAATTY 2 cut(s) 97, 632
AfaI GTAC 3 cut(s) 55, 515, 797
AgsI TTSAA 6 cut(s) 394, 473, 721, 811, 892, 938
AjnI CCWGG 1 cut(s) 7
AloI GAACNNNNNNTCC 2 cut(s) 552, 584
AluBI AGCT 4 cut(s) 19, 267, 307, 865
AluI AGCT 4 cut(s) 19, 267, 307, 865
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 2 cut(s) 328, 452
AoxI GGCC 2 cut(s) 5, 803
ApeKI GCWGC 3 cut(s) 31, 83, 875
ApoI RAATTY 2 cut(s) 97, 632
Asp718I GGTACC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 11, 146
AsuHPI GGTGA 1 cut(s) 941
AsuNHI GCTAGC 1 cut(s) 551
AvaII GGWCC 2 cut(s) 11, 146
BanI GGYRCC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 43, 70, 862
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 1 cut(s) 552
BfmI CTRYAG 1 cut(s) 676
BisI GCNGC 3 cut(s) 32, 84, 876
BlsI GCNGC 3 cut(s) 33, 85, 877
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 2 cut(s) 11, 146
BmgT120I GGNCC 2 cut(s) 11, 146
BmiI GGNNCC 4 cut(s) 43, 427, 525, 797
BmrFI CCNGG 1 cut(s) 9
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 4 cut(s) 234, 245, 480, 838
BmtI GCTAGC 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 683
BsaJI CCNNGG 1 cut(s) 825
BsaWI WCCGGW 1 cut(s) 228
Bse1I ACTGG 4 cut(s) 78, 476, 689, 696
Bse3DI GCAATG 3 cut(s) 154, 220, 634
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 825
BseGI GGATG 3 cut(s) 148, 225, 853
BseMI GCAATG 3 cut(s) 154, 220, 634
BseMII CTCAG 2 cut(s) 589, 875
BseNI ACTGG 4 cut(s) 78, 476, 689, 696
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 3 cut(s) 43, 70, 862
BshFI GGCC 2 cut(s) 7, 805
BshNI GGYRCC 1 cut(s) 795
BsiSI CCGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 484
BsnI GGCC 2 cut(s) 7, 805
Bsp143I GATC 4 cut(s) 151, 320, 457, 637
BspACI CCGC 1 cut(s) 45
BspANI GGCC 2 cut(s) 7, 805
BspCNI CTCAG 2 cut(s) 588, 874
BspLI GGNNCC 4 cut(s) 43, 427, 525, 797
BspOI GCTAGC 1 cut(s) 555
BspPI GGATC 2 cut(s) 328, 452
BspT107I GGYRCC 1 cut(s) 795
BsrDI GCAATG 3 cut(s) 154, 220, 634
BsrI ACTGG 4 cut(s) 78, 476, 689, 696
BssECI CCNNGG 1 cut(s) 825
BssMI GATC 4 cut(s) 151, 320, 457, 637
BssT1I CCWWGG 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 3 cut(s) 545, 677, 782
Bst6I CTCTTC 2 cut(s) 395, 716
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 3 cut(s) 430, 575, 861
BstF5I GGATG 3 cut(s) 148, 225, 853
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 4 cut(s) 154, 323, 460, 640
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 4 cut(s) 151, 320, 457, 637
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 676
BstV1I GCAGC 3 cut(s) 43, 70, 862
BsuRI GGCC 2 cut(s) 7, 805
BtsCI GGATG 3 cut(s) 148, 225, 853
BtsI GCAGTG 2 cut(s) 166, 562
BtsIMutI CAGTG 4 cut(s) 71, 166, 562, 696
Cac8I GCNNGC 1 cut(s) 553
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 11, 146
Csp6I GTAC 3 cut(s) 54, 514, 796
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 3 cut(s) 591, 843, 923
CviJI RGCY 8 cut(s) 7, 19, 122, 267, 307, 654, 805, 865
CviKI_1 RGCY 8 cut(s) 7, 19, 122, 267, 307, 654, 805, 865
CviQI GTAC 3 cut(s) 54, 514, 796
DdeI CTNAG 3 cut(s) 430, 575, 861
DpnI GATC 4 cut(s) 153, 322, 459, 639
DpnII GATC 4 cut(s) 151, 320, 457, 637
Eam1104I CTCTTC 2 cut(s) 395, 716
EarI CTCTTC 2 cut(s) 395, 716
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 825
Eco147I AGGCCT 2 cut(s) 7, 805
Eco47I GGWCC 2 cut(s) 11, 146
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 825
FaeI CATG 3 cut(s) 594, 846, 926
FatI CATG 3 cut(s) 590, 842, 922
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 32, 84, 876
FokI GGATG 3 cut(s) 155, 212, 860
Fsp4HI GCNGC 3 cut(s) 32, 84, 876
FspBI CTAG 1 cut(s) 552
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 32, 84, 876
HaeIII GGCC 2 cut(s) 7, 805
HapII CCGG 1 cut(s) 229
HhaI GCGC 1 cut(s) 88
Hin1II CATG 3 cut(s) 594, 846, 926
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HindIII AAGCTT 2 cut(s) 265, 305
HinfI GANTC 3 cut(s) 293, 533, 902
HpaII CCGG 1 cut(s) 229
HphI GGTGA 1 cut(s) 941
Hpy166II GTNNAC 2 cut(s) 202, 909
Hpy188I TCNGA 6 cut(s) 292, 340, 451, 538, 607, 739
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 2 cut(s) 202, 909
HpyAV CCTTC 2 cut(s) 133, 830
HpyCH4III ACNGT 3 cut(s) 545, 677, 782
HpyCH4IV ACGT 1 cut(s) 933
HpyCH4V TGCA 6 cut(s) 159, 225, 236, 668, 776, 851
HpyF3I CTNAG 3 cut(s) 430, 575, 861
HpySE526I ACGT 1 cut(s) 933
Hsp92II CATG 3 cut(s) 594, 846, 926
HspAI GCGC 1 cut(s) 86
KpnI GGTACC 1 cut(s) 799
Kzo9I GATC 4 cut(s) 151, 320, 457, 637
LmnI GCTCC 1 cut(s) 896
Lsp1109I GCAGC 3 cut(s) 43, 70, 862
LweI GCATC 4 cut(s) 234, 245, 480, 838
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 2 cut(s) 782, 929
MalI GATC 4 cut(s) 153, 322, 459, 639
MboI GATC 4 cut(s) 151, 320, 457, 637
MboII GAAGA 3 cut(s) 288, 382, 733
MfeI CAATTG 2 cut(s) 49, 111
MluCI AATT 8 cut(s) 49, 63, 97, 111, 349, 394, 466, 632
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 1 cut(s) 811
MnlI CCTC 7 cut(s) 188, 255, 258, 507, 584, 733, 795
MseI TTAA 3 cut(s) 357, 375, 755
MslI CAYNNNNRTG 2 cut(s) 159, 927
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 2 cut(s) 49, 111
MvaI CCWGG 1 cut(s) 9
NdeII GATC 4 cut(s) 151, 320, 457, 637
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 3 cut(s) 594, 846, 926
NlaIV GGNNCC 4 cut(s) 43, 427, 525, 797
NmuCI GTSAC 1 cut(s) 929
NsbI TGCGCA 1 cut(s) 87
PceI AGGCCT 2 cut(s) 7, 805
PfeI GAWTC 2 cut(s) 293, 533
PkrI GCNGC 3 cut(s) 33, 85, 877
PleI GAGTC 1 cut(s) 896
PpsI GAGTC 1 cut(s) 896
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 4 cut(s) 43, 427, 525, 797
PspPI GGNCC 2 cut(s) 11, 146
PsrI GAACNNNNNNTAC 4 cut(s) 497, 529, 718, 750
RsaI GTAC 3 cut(s) 55, 515, 797
RsaNI GTAC 3 cut(s) 54, 514, 796
RseI CAYNNNNRTG 2 cut(s) 159, 927
SaqAI TTAA 3 cut(s) 357, 375, 755
SatI GCNGC 3 cut(s) 32, 84, 876
Sau3AI GATC 4 cut(s) 151, 320, 457, 637
Sau96I GGNCC 2 cut(s) 11, 146
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 1 cut(s) 9
SfaNI GCATC 4 cut(s) 234, 245, 480, 838
SfcI CTRYAG 1 cut(s) 676
SinI GGWCC 2 cut(s) 11, 146
SmiMI CAYNNNNRTG 2 cut(s) 159, 927
Sse9I AATT 8 cut(s) 49, 63, 97, 111, 349, 394, 466, 632
SseBI AGGCCT 2 cut(s) 7, 805
SsiI CCGC 1 cut(s) 45
SspI AATATT 2 cut(s) 647, 771
SspMI CTAG 1 cut(s) 552
StuI AGGCCT 2 cut(s) 7, 805
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 3 cut(s) 545, 677, 782
TaiI ACGT 1 cut(s) 936
TaqI TCGA 3 cut(s) 130, 650, 883
TasI AATT 8 cut(s) 49, 63, 97, 111, 349, 394, 466, 632
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 2 cut(s) 293, 533
Tru1I TTAA 3 cut(s) 357, 375, 755
Tru9I TTAA 3 cut(s) 357, 375, 755
TscAI CASTG 4 cut(s) 78, 166, 562, 696
TseFI GTSAC 1 cut(s) 929
TseI GCWGC 3 cut(s) 31, 83, 875
Tsp45I GTSAC 1 cut(s) 929
TspDTI ATGAA 6 cut(s) 115, 347, 518, 546, 645, 911
TspRI CASTG 4 cut(s) 78, 166, 562, 696
VpaK11BI GGWCC 2 cut(s) 11, 146
XapI RAATTY 2 cut(s) 97, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.