FvH4_3g20290

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000420
Physical Location & Seq
Reverse (-)
13328687 .. 13330127
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20290.t1

Sequence Viewer

Length: 1188 bp
ATGGAAGTGTTCAACTTTCATCAGAAATATGAGGATACCCAAATTGAGAAGGTAACCAAGTTGTGCCCCAGAGAGAAGATCACTGTTGATTACAACACTGAGATATATCCAAATCCATTTTTTGATGACATGAGATTACATATGTTTTCTAGAAAATCCAAAAGGGAGGTGGAATGGGGCTCTTCTTTACCTCTTTCTGTTGGAGATCAGCTGTACAGACCTGGAACATATACAGTTGAAGATGCATATGACCACAGCACCTCCTACAATATGAGCTTCCTCGTATTTATCAACTTGAGTAATCTATCAATTACGGATATGATATCTGCTGAAGGGGTCTATAATGTTACAGAAGGAAGCTTGTGCATGTTGCCTCCAGCAAATTCAAGGAGAAAGATCTCAGGTTATATCATGGGAAGCATTGAAAGCACACGGAACAAGCCTGATCCTCTTTATTTTGAGCGTTTGGATTTGTCTTCACCTCACGCCTACATGATTCATGTTATGTATTCCTTTGAAGCCATCTTCACCTATGACCCCGACTACCAACACGCGTTCATAGGAAGTGATGGATGGCTTCAAACTGATCTGGGAACTCTGATGGTAATATCAGTAATAACAATGTTAGCTTTCTTGTTACATTTCCTCCTTTTGCATCAAACTTGGTCAGCAAGGTCTGCAAATGGAACCTTTAAGGAGCTTTGGGATGTGGAGAAGAAGGCTTTATCAGTATATGCCCTAGGAGTTCTAGCTGCTATGGCGCTTCTGATGAAATCAGGTCCTCAAGGGCATCCCATTTTGGGTTCAAGCAGCTATGGTGCTTATGCTGGTTTATCGTTGGATACCTTTCTGTTTCCTCAAATTTTACTCAACATGGTCTGCAACTCAAAGGGAAAAGCTCTGTCAGTTGGATTCTACATTAGAACAACTCTTGTTCGAGTCCTACCACATGCATATGATCTTTACAGGACTGGCAACACTGATTTTGTCTTGGAAGAACCATACGTTTTTGCAAGACCTGGGACTGGTTTTTACTGTACTGATTGGGATGTCATTATTCCTATAGGACCTCTACTGTTTTGTGTTATCATCTTCTTACAGCAGAAGTTTGGGGGCCGTTGCTTTCTTCCTAAGAAGTTGAGAGAGTTGGGTGCATATGAGAAGGTCCTGAAAGTTCTTGAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

396

Amino Acids

44.87

Weight (kDa)

6.07

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921 PF11145 163 - 380 1.3e-34 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 554
AclWI GGATC 1 cut(s) 440
AcsI RAATTY 2 cut(s) 382, 861
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 2 cut(s) 215, 1039
AfiI CCNNNNNNNGG 2 cut(s) 800, 1025
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 8 cut(s) 13, 239, 387, 425, 518, 581, 807, 1181
AjnI CCWGG 2 cut(s) 220, 1018
AluBI AGCT 8 cut(s) 211, 276, 360, 629, 700, 752, 813, 899
AluI AGCT 8 cut(s) 211, 276, 360, 629, 700, 752, 813, 899
AlwI GGATC 1 cut(s) 440
AoxI GGCC 1 cut(s) 1114
ApeKI GCWGC 2 cut(s) 752, 810
ApoI RAATTY 2 cut(s) 382, 861
AspA2I CCTAGG 1 cut(s) 739
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 4 cut(s) 779, 1067, 1114, 1165
AsuHPI GGTGA 2 cut(s) 471, 520
AvaII GGWCC 3 cut(s) 779, 1067, 1165
AvrII CCTAGG 1 cut(s) 739
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 739, 822
BccI CCATC 4 cut(s) 530, 563, 567, 595
BceAI ACGGC 1 cut(s) 1101
BciT130I CCWGG 2 cut(s) 222, 1020
BciVI GTATCC 2 cut(s) 28, 835
BfaI CTAG 3 cut(s) 150, 740, 749
BfmI CTRYAG 1 cut(s) 1062
BfoI RGCGCY 1 cut(s) 764
BfuI GTATCC 2 cut(s) 28, 835
BglII AGATCT 1 cut(s) 396
BisI GCNGC 2 cut(s) 753, 811
BlnI CCTAGG 1 cut(s) 739
BlsI GCNGC 2 cut(s) 754, 812
Bme1390I CCNGG 2 cut(s) 222, 1020
Bme18I GGWCC 3 cut(s) 779, 1067, 1165
BmgT120I GGNCC 4 cut(s) 779, 1067, 1114, 1165
BmiI GGNNCC 2 cut(s) 688, 1115
BmrFI CCNGG 2 cut(s) 222, 1020
BmsI GCATC 3 cut(s) 232, 664, 799
BpiI GAAGAC 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 316, 768
BsaJI CCNNGG 2 cut(s) 739, 1019
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 630, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 800, 1025
Bse1I ACTGG 2 cut(s) 976, 1030
BseBI CCWGG 2 cut(s) 222, 1020
BseDI CCNNGG 2 cut(s) 739, 1019
BseGI GGATG 4 cut(s) 578, 712, 790, 1054
BseLI CCNNNNNNNGG 2 cut(s) 800, 1025
BseMII CTCAG 2 cut(s) 90, 414
BseNI ACTGG 2 cut(s) 976, 1030
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 2 cut(s) 739, 822
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 1 cut(s) 1116
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 2 cut(s) 800, 1025
BsmFI GGGAC 1 cut(s) 1036
BsnI GGCC 1 cut(s) 1116
Bsp1286I GDGCHC 2 cut(s) 68, 182
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 6 cut(s) 78, 205, 396, 445, 586, 958
BspANI GGCC 1 cut(s) 1116
BspCNI CTCAG 2 cut(s) 91, 413
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 2 cut(s) 688, 1115
BspPI GGATC 1 cut(s) 440
BspQI GCTCTTC 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 2 cut(s) 976, 1030
BssECI CCNNGG 2 cut(s) 739, 1019
BssMI GATC 6 cut(s) 78, 205, 396, 445, 586, 958
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 2 cut(s) 222, 1020
Bst4CI ACNGT 4 cut(s) 85, 235, 1037, 1077
Bst6I CTCTTC 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 677
BstAUI TGTACA 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 99, 400, 1131
BstEII GGTNACC 1 cut(s) 52
BstF5I GGATG 4 cut(s) 578, 712, 790, 1054
BstFNI CGCG 1 cut(s) 554
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 6 cut(s) 81, 208, 399, 448, 589, 961
BstMBI GATC 6 cut(s) 78, 205, 396, 445, 586, 958
BstMWI GCNNNNNNNGC 3 cut(s) 426, 677, 758
BstNI CCWGG 2 cut(s) 222, 1020
BstNSI RCATGY 2 cut(s) 370, 953
BstPI GGTNACC 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 220, 1018
BstSFI CTRYAG 1 cut(s) 1062
BstSLI GKGCMC 1 cut(s) 68
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 2 cut(s) 739, 822
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BsuI GTATCC 2 cut(s) 28, 835
BsuRI GGCC 1 cut(s) 1116
BtsCI GGATG 4 cut(s) 578, 712, 790, 1054
BtsIMutI CAGTG 3 cut(s) 81, 96, 978
CfoI GCGC 1 cut(s) 763
Cfr13I GGNCC 4 cut(s) 779, 1067, 1114, 1165
Csp6I GTAC 2 cut(s) 214, 1038
CviAII CATG 7 cut(s) 130, 367, 412, 493, 500, 874, 950
CviQI GTAC 2 cut(s) 214, 1038
DdeI CTNAG 3 cut(s) 99, 400, 1131
DpnI GATC 6 cut(s) 80, 207, 398, 447, 588, 960
DpnII GATC 6 cut(s) 78, 205, 396, 445, 586, 958
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 3 cut(s) 779, 1067, 1165
Eco57I CTGAAG 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 52
EcoO109I RGGNCCY 3 cut(s) 779, 1067, 1165
EcoO65I GGTNACC 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 220, 1018
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 739
EcoT22I ATGCAT 2 cut(s) 247, 955
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 7 cut(s) 133, 370, 415, 496, 503, 877, 953
FaqI GGGAC 1 cut(s) 1036
FatI CATG 7 cut(s) 129, 366, 411, 492, 499, 873, 949
FauNDI CATATG 4 cut(s) 141, 247, 955, 1156
Fnu4HI GCNGC 2 cut(s) 753, 811
FokI GGATG 4 cut(s) 585, 719, 777, 1061
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 753, 811
FspBI CTAG 3 cut(s) 150, 740, 749
GlaI GCGC 1 cut(s) 762
GluI GCNGC 2 cut(s) 753, 811
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 1 cut(s) 1116
HhaI GCGC 1 cut(s) 763
Hin1II CATG 7 cut(s) 133, 370, 415, 496, 503, 877, 953
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 3 cut(s) 496, 912, 939
HphI GGTGA 2 cut(s) 471, 520
Hpy188I TCNGA 3 cut(s) 24, 600, 768
Hpy188III TCNNGA 3 cut(s) 150, 1168, 1178
HpyAV CCTTC 5 cut(s) 43, 326, 347, 712, 1156
HpyCH4III ACNGT 4 cut(s) 85, 235, 1037, 1077
HpyCH4IV ACGT 1 cut(s) 1005
HpyCH4V TGCA 8 cut(s) 245, 366, 655, 680, 882, 953, 1013, 1154
HpyF10VI GCNNNNNNNGC 3 cut(s) 426, 677, 758
HpyF3I CTNAG 3 cut(s) 99, 400, 1131
HpySE526I ACGT 1 cut(s) 1005
Hsp92II CATG 7 cut(s) 133, 370, 415, 496, 503, 877, 953
HspAI GCGC 1 cut(s) 761
Kzo9I GATC 6 cut(s) 78, 205, 396, 445, 586, 958
LguI GCTCTTC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 2 cut(s) 739, 822
LweI GCATC 3 cut(s) 232, 664, 799
MaeI CTAG 3 cut(s) 150, 740, 749
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 3 cut(s) 52, 346, 636
MalI GATC 6 cut(s) 80, 207, 398, 447, 588, 960
MboI GATC 6 cut(s) 78, 205, 396, 445, 586, 958
MboII GAAGA 9 cut(s) 88, 174, 251, 468, 517, 727, 1007, 1084, 1118
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 2 cut(s) 68, 182
MluCI AATT 4 cut(s) 42, 309, 382, 861
MluI ACGCGT 1 cut(s) 552
MlyI GAGTC 1 cut(s) 948
MmeI TCCRAC 3 cut(s) 181, 819, 889
Mph1103I ATGCAT 2 cut(s) 247, 955
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 1 cut(s) 954
MspA1I CMGCKG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 222, 1020
MvaI CCWGG 2 cut(s) 222, 1020
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 3 cut(s) 426, 677, 758
NdeI CATATG 4 cut(s) 141, 247, 955, 1156
NdeII GATC 6 cut(s) 78, 205, 396, 445, 586, 958
NlaIII CATG 7 cut(s) 133, 370, 415, 496, 503, 877, 953
NlaIV GGNNCC 2 cut(s) 688, 1115
NsiI ATGCAT 2 cut(s) 247, 955
NspI RCATGY 2 cut(s) 370, 953
PciSI GCTCTTC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 496, 912
PkrI GCNGC 2 cut(s) 754, 812
PleI GAGTC 1 cut(s) 947
PpsI GAGTC 1 cut(s) 947
PpuMI RGGWCCY 3 cut(s) 779, 1067, 1165
Psp5II RGGWCCY 3 cut(s) 779, 1067, 1165
Psp6I CCWGG 2 cut(s) 220, 1018
PspEI GGTNACC 1 cut(s) 52
PspGI CCWGG 2 cut(s) 220, 1018
PspN4I GGNNCC 2 cut(s) 688, 1115
PspPI GGNCC 4 cut(s) 779, 1067, 1114, 1165
PspPPI RGGWCCY 3 cut(s) 779, 1067, 1165
PsuI RGATCY 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 2 cut(s) 215, 1039
RsaNI GTAC 2 cut(s) 214, 1038
RseI CAYNNNNRTG 1 cut(s) 954
SapI GCTCTTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 2 cut(s) 753, 811
Sau3AI GATC 6 cut(s) 78, 205, 396, 445, 586, 958
Sau96I GGNCC 4 cut(s) 779, 1067, 1114, 1165
SchI GAGTC 1 cut(s) 948
ScrFI CCNGG 2 cut(s) 222, 1020
SduI GDGCHC 2 cut(s) 68, 182
SfaNI GCATC 3 cut(s) 232, 664, 799
SfcI CTRYAG 1 cut(s) 1062
SinI GGWCC 3 cut(s) 779, 1067, 1165
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 2 cut(s) 295, 783
SmoI CTYRAG 2 cut(s) 295, 783
Sse9I AATT 4 cut(s) 42, 309, 382, 861
SspMI CTAG 3 cut(s) 150, 740, 749
StyD4I CCNGG 2 cut(s) 220, 1018
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 4 cut(s) 85, 235, 1037, 1077
TaiI ACGT 1 cut(s) 1008
TaqI TCGA 1 cut(s) 937
TasI AATT 4 cut(s) 42, 309, 382, 861
TatI WGTACW 2 cut(s) 213, 1037
TfiI GAWTC 2 cut(s) 496, 912
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 3 cut(s) 88, 103, 985
TseI GCWGC 2 cut(s) 752, 810
TspDTI ATGAA 4 cut(s) 8, 488, 547, 785
TspGWI ACGGA 2 cut(s) 329, 448
TspRI CASTG 3 cut(s) 88, 103, 985
VpaK11BI GGWCC 3 cut(s) 779, 1067, 1165
XapI RAATTY 2 cut(s) 382, 861
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 2 cut(s) 370, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmaJI CCTAGG 1 cut(s) 739
XspI CTAG 3 cut(s) 150, 740, 749
Zsp2I ATGCAT 2 cut(s) 247, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.