RchiOBHm_Chr5g0034221

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000420
Physical Location & Seq
Reverse (-)
28103403 .. 28104065
663 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31325

Sequence Viewer

Length: 663 bp
ATGACATTCCTGCAATCTCAAGAGCATTCATTGCATGAACACTCTTCTGTTTTTGTGGAGATCGTCTTGGTTCTCATATCCACCATACTTGCTTCTGTTTTGGTGGCATCACAACTCTTTCATGTGAAAAAACATCAAGATGTGCTTCCCTCCATTTCATTCTTAATGCCACTAATTCTAAGCCTTGGCTACTTGATACCTCTTATGGTAAACATTGAAGCCATCTTCATGCATGACACTGAACGCCAAAATCTGTTCTTTGGAAGCGGTGAATGGCTTCAATTTTCTCAGGAAAACGTAAGGGAAATAACTGTAATAACAATGGTAGTAGCTCTCTTGTTGCATTTCCTCCTTTTGCAGCAAATATGGTCAGCACAATCTGTGAAAGGAATCATTACGCAGCTTTGGAATGTGGAGAAGATCGAAGGCTTTACCTGTATATGCAGCAGGAGTTTTAACTTTTATGCTGCTTCTGATGAATTCAAGTCATATAGACATCCCATGTTGAGTTTTAGCTGTTATCGCGCATATGCTGGTTTGATATTGAATGGTTTTCTGTTGCCTCAAATTGTACTAAACATGGTCTGCAAATCGAAGGGAAGAGCTCTGTCACTTTCATTCTATTGGAACAACTATTGTTCATGTCCTGCCACATGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

220

Amino Acids

25.11

Weight (kDa)

6.69

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921 PF11145 19 - 209 8.2e-26 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 525
AciI CCGC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 1 cut(s) 573
AgsI TTSAA 4 cut(s) 218, 281, 484, 547
AluBI AGCT 4 cut(s) 332, 403, 516, 605
AluI AGCT 4 cut(s) 332, 403, 516, 605
Alw21I GWGCWC 1 cut(s) 607
ApeKI GCWGC 4 cut(s) 358, 400, 444, 467
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 281
BanII GRGCYC 1 cut(s) 607
Bbv12I GWGCWC 1 cut(s) 607
BbvI GCAGC 4 cut(s) 370, 412, 454, 456
BccI CCATC 1 cut(s) 230
BisI GCNGC 4 cut(s) 359, 401, 445, 468
BlsI GCNGC 4 cut(s) 360, 402, 446, 469
BmsI GCATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 496
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 302
BseXI GCAGC 4 cut(s) 370, 412, 454, 456
Bsh1236I CGCG 1 cut(s) 525
BsiHKAI GWGCWC 1 cut(s) 607
BsmI GAATGC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 2 cut(s) 60, 420
BspACI CCGC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 525
BspQI GCTCTTC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 2 cut(s) 60, 420
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 2 cut(s) 49, 595
BstAPI GCANNNNNTGC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 179, 288
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 525
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 2 cut(s) 63, 423
BstMBI GATC 2 cut(s) 60, 420
BstMWI GCNNNNNNNGC 2 cut(s) 31, 522
BstNSI RCATGY 1 cut(s) 657
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 4 cut(s) 370, 412, 454, 456
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 237
CfoI GCGC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 572
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 8 cut(s) 35, 122, 229, 233, 502, 580, 642, 654
CviJI RGCY 9 cut(s) 183, 189, 221, 277, 332, 403, 429, 516, 605
CviKI_1 RGCY 9 cut(s) 183, 189, 221, 277, 332, 403, 429, 516, 605
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 2 cut(s) 179, 288
DpnI GATC 2 cut(s) 62, 422
DpnII GATC 2 cut(s) 60, 420
Eam1104I CTCTTC 2 cut(s) 49, 595
EarI CTCTTC 2 cut(s) 49, 595
Ecl136II GAGCTC 1 cut(s) 605
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 605
EcoICRI GAGCTC 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 8 cut(s) 38, 125, 232, 236, 505, 583, 645, 657
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 8 cut(s) 34, 121, 228, 232, 501, 579, 641, 653
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 4 cut(s) 359, 401, 445, 468
FokI GGATG 1 cut(s) 483
FriOI GRGCYC 1 cut(s) 607
Fsp4HI GCNGC 4 cut(s) 359, 401, 445, 468
GlaI GCGC 1 cut(s) 526
GluI GCNGC 4 cut(s) 359, 401, 445, 468
HhaI GCGC 1 cut(s) 527
Hin1II CATG 8 cut(s) 38, 125, 232, 236, 505, 583, 645, 657
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HinfI GANTC 1 cut(s) 390
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 3 cut(s) 20, 137, 290
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 419, 589
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 7 cut(s) 13, 34, 232, 343, 358, 444, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 522
HpyF3I CTNAG 2 cut(s) 179, 288
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 8 cut(s) 38, 125, 232, 236, 505, 583, 645, 657
HspAI GCGC 1 cut(s) 525
Kzo9I GATC 2 cut(s) 60, 420
LguI GCTCTTC 1 cut(s) 595
LpnPI CCDG 5 cut(s) 23, 275, 433, 448, 519
Lsp1109I GCAGC 4 cut(s) 370, 412, 454, 456
LweI GCATC 1 cut(s) 116
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 609
MalI GATC 2 cut(s) 62, 422
MboI GATC 2 cut(s) 60, 420
MboII GAAGA 4 cut(s) 36, 217, 430, 612
MhlI GDGCHC 1 cut(s) 607
MluCI AATT 4 cut(s) 174, 281, 479, 567
MnlI CCTC 4 cut(s) 160, 210, 359, 573
Mph1103I ATGCAT 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 2 cut(s) 164, 456
MslI CAYNNNNRTG 3 cut(s) 138, 227, 658
Mva1269I GAATGC 1 cut(s) 25
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 2 cut(s) 31, 522
NdeI CATATG 1 cut(s) 529
NdeII GATC 2 cut(s) 60, 420
NlaIII CATG 8 cut(s) 38, 125, 232, 236, 505, 583, 645, 657
NmuCI GTSAC 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 234
NspI RCATGY 1 cut(s) 657
PciSI GCTCTTC 1 cut(s) 595
PctI GAATGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 4 cut(s) 360, 402, 446, 469
Psp124BI GAGCTC 1 cut(s) 607
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
RseI CAYNNNNRTG 3 cut(s) 138, 227, 658
SacI GAGCTC 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 595
SaqAI TTAA 2 cut(s) 164, 456
SatI GCNGC 4 cut(s) 359, 401, 445, 468
Sau3AI GATC 2 cut(s) 60, 420
SduI GDGCHC 1 cut(s) 607
SetI ASST 7 cut(s) 202, 300, 334, 405, 437, 518, 607
SfaNI GCATC 1 cut(s) 116
SmiMI CAYNNNNRTG 3 cut(s) 138, 227, 658
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 4 cut(s) 174, 281, 479, 567
SsiI CCGC 1 cut(s) 267
SstI GAGCTC 1 cut(s) 607
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 423, 593
TasI AATT 4 cut(s) 174, 281, 479, 567
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 2 cut(s) 164, 456
Tru9I TTAA 2 cut(s) 164, 456
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 4 cut(s) 358, 400, 444, 467
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 8 cut(s) 18, 51, 110, 147, 217, 492, 606, 630
TspRI CASTG 1 cut(s) 244
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 657
XmnI GAANNNNTTC 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.