FvH4_2g30370

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000420
Physical Location & Seq
Forward (+)
23536646 .. 23540574
3929 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30370.t1

Sequence Viewer

Length: 1092 bp
ATGGTGGGCCGGCGCAACCGTGGAAGAGAACATCACCAGCGGAAGAGATCATTGCCGGCGGAAGAGCTCGGCCTCCCTCCGCCGTCACGAGCTCTTCCTCCCTCCGCCATTGTCGCTCGCGATCTCTCTCTCTCTCTTCCGTCGTCGCTCGTGAGCCTCCCTCCGCCGGTGACGCTGGTGAACTTCCGGGGACCGAAGATTCCAGTCACGCGGGGTGTGGTGAGGTTCAGGCTTGATGGGTATTATTCGGAATTGGATAAGAAGCTATGTATGATTAGGAAGAGTAGGTCCATGTATAATGCAGGTAACTTCGAGCCTAGTGTTGTTCTTAAGCTTAATTATCCGAAATGGTCTAGTATTTATGACAGTTTGATTAGTGGGAGCTTAGAGAGTGTTGTTAGTGATAAGGATGATGGTGAGAATTATTTTGATGCTATTATGGTGTTGGCTTTTTCTGTGAAGCATAGTTATGGGTATACATTTGTTGGGGAAGATAAGATGAGTAGTTTTCCGAGTAGTGTTGAGAGTGGAGAGAGTATAGGTTTGAGTAATTTGAATGATTCAAACGGTGGTTTGTGTAGGTTGCTTGGTAACCGTCTCGAGAGATTTGAATTGGTGTATGGGAGTGAGTGTGGTGGGGGTGTGAATTGCAATCCTCTTGGTGGGGATGTTGGATATGTACCGAGCTCGTTGTCTAAAACTTTGGGAGATGACGAGTCTGAACATACTGTTGAGTACACTGGTGGGAATGATTTCAGAACTTCATGGGATATCAAGGCCACTCCTACTTTCTTCTTCCTCCAAGATGGTCAGCAAGTTGACAAGCTTGTCGAAGCCAACAAGGTGAAGCATGTAAACCGACAATTGTCTCCGCCTAGGAAGCACGGAATCACCGAGAGACACACATTTCTCCCTTCCGAAGCGGAAGCGAAGCGGAAACGCAGTGGAAGCGGTCGGAATCACGCTTTCGAAAAAAGCAAATCTGGGAGCGAGACGGAAGCACAAGCTTTCGATTTGGAAGCACAACGGTGGAACTTATGTAGGAAGCGCGACCTCTATCTCGCCATCGTTTGTCTTCAGTCTGGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

364

Amino Acids

40.28

Weight (kDa)

8.89

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 65 - 146 1e-09 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 476
AccII CGCG 3 cut(s) 120, 211, 1050
AcuI CTGAAG 1 cut(s) 1061
AfaI GTAC 2 cut(s) 681, 737
AfiI CCNNNNNNNGG 2 cut(s) 166, 662
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 3 cut(s) 556, 564, 611
AleI CACNNNNGTG 1 cut(s) 1027
AluBI AGCT 8 cut(s) 67, 92, 265, 334, 384, 687, 826, 1007
AluI AGCT 8 cut(s) 67, 92, 265, 334, 384, 687, 826, 1007
Alw21I GWGCWC 3 cut(s) 69, 94, 689
Alw26I GTCTC 4 cut(s) 602, 873, 892, 986
Ama87I CYCGRG 1 cut(s) 599
AoxI GGCC 3 cut(s) 7, 70, 777
Asp700I GAANNNNTTC 1 cut(s) 752
AspA2I CCTAGG 1 cut(s) 875
AspLEI GCGC 2 cut(s) 15, 1050
AspS9I GGNCC 3 cut(s) 7, 191, 288
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 7 cut(s) 26, 181, 190, 232, 428, 856, 883
AsuII TTCGAA 1 cut(s) 969
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 2 cut(s) 191, 288
AvrII CCTAGG 1 cut(s) 875
BanII GRGCYC 3 cut(s) 69, 94, 689
BauI CACGAG 2 cut(s) 87, 149
BbsI GAAGAC 1 cut(s) 1067
Bbv12I GWGCWC 3 cut(s) 69, 94, 689
BccI CCATC 4 cut(s) 230, 407, 800, 1073
BceAI ACGGC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 4 cut(s) 602, 873, 892, 986
BfaI CTAG 3 cut(s) 318, 354, 876
BfrI CTTAAG 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 293
BlnI CCTAGG 1 cut(s) 875
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 2 cut(s) 191, 288
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 7, 191, 288
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 421
BoxI GACNNNNGTC 1 cut(s) 865
BpiI GAAGAC 1 cut(s) 1067
BplI GAGNNNNNCTC 2 cut(s) 145, 177
Bpu14I TTCGAA 1 cut(s) 969
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 19, 187, 875
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 662
Bse118I RCCGGY 3 cut(s) 9, 55, 166
Bse1I ACTGG 2 cut(s) 203, 745
Bse3DI GCAATG 1 cut(s) 50
BseDI CCNNGG 3 cut(s) 19, 187, 875
BseGI GGATG 2 cut(s) 415, 673
BseLI CCNNNNNNNGG 2 cut(s) 166, 662
BseMI GCAATG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 203, 745
Bsh1236I CGCG 3 cut(s) 120, 211, 1050
Bsh1285I CGRYCG 1 cut(s) 955
BshFI GGCC 3 cut(s) 9, 72, 779
BsiEI CGRYCG 1 cut(s) 955
BsiHKAI GWGCWC 3 cut(s) 69, 94, 689
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 4 cut(s) 10, 56, 167, 187
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 166, 662
BsmAI GTCTC 4 cut(s) 602, 873, 892, 986
BsmBI CGTCTC 2 cut(s) 602, 986
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 3 cut(s) 9, 72, 779
BsoBI CYCGRG 1 cut(s) 599
Bsp119I TTCGAA 1 cut(s) 969
Bsp1286I GDGCHC 3 cut(s) 69, 94, 689
Bsp143I GATC 2 cut(s) 47, 121
Bsp68I TCGCGA 1 cut(s) 120
BspANI GGCC 3 cut(s) 9, 72, 779
BspFNI CGCG 3 cut(s) 120, 211, 1050
BspLI GGNNCC 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 293
BspQI GCTCTTC 2 cut(s) 57, 99
BspT104I TTCGAA 1 cut(s) 969
BspTI CTTAAG 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 50
BsrFI RCCGGY 3 cut(s) 9, 55, 166
BsrI ACTGG 2 cut(s) 203, 745
BssAI RCCGGY 3 cut(s) 9, 55, 166
BssECI CCNNGG 3 cut(s) 19, 187, 875
BssMI GATC 2 cut(s) 47, 121
BssNAI GTATAC 1 cut(s) 477
BssSI CACGAG 2 cut(s) 87, 149
BssT1I CCWWGG 1 cut(s) 875
Bst1107I GTATAC 1 cut(s) 477
Bst2BI CACGAG 2 cut(s) 87, 149
Bst4CI ACNGT 6 cut(s) 20, 368, 569, 596, 730, 1029
Bst6I CTCTTC 6 cut(s) 19, 38, 57, 99, 141, 275
BstAFI CTTAAG 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 969
BstC8I GCNNGC 3 cut(s) 11, 57, 118
BstDEI CTNAG 1 cut(s) 385
BstDSI CCRYGG 1 cut(s) 19
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 2 cut(s) 415, 673
BstFNI CGCG 3 cut(s) 120, 211, 1050
BstHHI GCGC 2 cut(s) 15, 1050
BstKTI GATC 2 cut(s) 50, 124
BstMAI GTCTC 4 cut(s) 602, 873, 892, 986
BstMBI GATC 2 cut(s) 47, 121
BstMCI CGRYCG 1 cut(s) 955
BstMWI GCNNNNNNNGC 4 cut(s) 113, 172, 880, 948
BstNSI RCATGY 1 cut(s) 854
BstPAI GACNNNNGTC 1 cut(s) 865
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 1 cut(s) 186
BstUI CGCG 3 cut(s) 120, 211, 1050
BstV2I GAAGAC 1 cut(s) 1067
BstZ17I GTATAC 1 cut(s) 477
BsuRI GGCC 3 cut(s) 9, 72, 779
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 415, 673
BtsI GCAGTG 1 cut(s) 949
BtsIMutI CAGTG 2 cut(s) 738, 949
BtuMI TCGCGA 1 cut(s) 120
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 3 cut(s) 11, 57, 118
CfoI GCGC 2 cut(s) 15, 1050
Cfr10I RCCGGY 3 cut(s) 9, 55, 166
Cfr13I GGNCC 3 cut(s) 7, 191, 288
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 680, 736
CviAII CATG 3 cut(s) 292, 765, 851
CviQI GTAC 2 cut(s) 680, 736
DdeI CTNAG 1 cut(s) 385
DpnI GATC 2 cut(s) 49, 123
DpnII GATC 2 cut(s) 47, 121
DrdI GACNNNNNNGTC 1 cut(s) 827
DseDI GACNNNNNNGTC 1 cut(s) 827
Eam1104I CTCTTC 6 cut(s) 19, 38, 57, 99, 141, 275
EarI CTCTTC 6 cut(s) 19, 38, 57, 99, 141, 275
EciI GGCGGA 5 cut(s) 69, 74, 94, 153, 861
Ecl136II GAGCTC 3 cut(s) 67, 92, 687
Eco130I CCWWGG 1 cut(s) 875
Eco24I GRGCYC 3 cut(s) 69, 94, 689
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 191, 288
Eco53kI GAGCTC 3 cut(s) 67, 92, 687
Eco57I CTGAAG 1 cut(s) 1061
Eco88I CYCGRG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 590
EcoICRI GAGCTC 3 cut(s) 67, 92, 687
EcoO65I GGTNACC 1 cut(s) 590
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 875
EcoT38I GRGCYC 3 cut(s) 69, 94, 689
ErhI CCWWGG 1 cut(s) 875
Esp3I CGTCTC 2 cut(s) 602, 986
FaeI CATG 3 cut(s) 295, 768, 854
FaqI GGGAC 1 cut(s) 204
FatI CATG 3 cut(s) 291, 764, 850
FauI CCCGC 1 cut(s) 204
FblI GTMKAC 1 cut(s) 476
FokI GGATG 2 cut(s) 422, 680
FriOI GRGCYC 3 cut(s) 69, 94, 689
FspBI CTAG 3 cut(s) 318, 354, 876
GlaI GCGC 2 cut(s) 14, 1049
HaeIII GGCC 3 cut(s) 9, 72, 779
HapII CCGG 4 cut(s) 10, 56, 167, 187
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 15, 1050
Hin1II CATG 3 cut(s) 295, 768, 854
Hin6I GCGC 2 cut(s) 13, 1048
HinP1I GCGC 2 cut(s) 13, 1048
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 3 cut(s) 332, 824, 1005
HinfI GANTC 5 cut(s) 199, 560, 716, 888, 958
HpaII CCGG 4 cut(s) 10, 56, 167, 187
HphI GGTGA 7 cut(s) 26, 181, 190, 232, 428, 856, 883
Hpy166II GTNNAC 5 cut(s) 181, 477, 738, 820, 856
Hpy188I TCNGA 7 cut(s) 250, 345, 513, 721, 758, 919, 957
Hpy188III TCNNGA 5 cut(s) 87, 119, 151, 599, 601
Hpy8I GTNNAC 5 cut(s) 181, 477, 738, 820, 856
Hpy99I CGWCG 2 cut(s) 145, 148
HpyAV CCTTC 1 cut(s) 924
HpyCH4III ACNGT 6 cut(s) 20, 368, 569, 596, 730, 1029
HpyCH4V TGCA 2 cut(s) 302, 651
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 172, 880, 948
HpyF3I CTNAG 1 cut(s) 385
Hsp92II CATG 3 cut(s) 295, 768, 854
HspAI GCGC 2 cut(s) 13, 1048
KroI GCCGGC 2 cut(s) 9, 55
KroNI GCCGGC 2 cut(s) 11, 57
Kzo9I GATC 2 cut(s) 47, 121
LguI GCTCTTC 2 cut(s) 57, 99
LmnI GCTCC 2 cut(s) 381, 987
LweI GCATC 1 cut(s) 421
MaeI CTAG 3 cut(s) 318, 354, 876
MaeIII GTNAC 5 cut(s) 84, 169, 205, 305, 590
MalI GATC 2 cut(s) 49, 123
MboI GATC 2 cut(s) 47, 121
MfeI CAATTG 1 cut(s) 863
MhlI GDGCHC 3 cut(s) 69, 94, 689
MluCI AATT 7 cut(s) 251, 337, 421, 550, 611, 646, 863
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 2 cut(s) 652, 935
MroNI GCCGGC 2 cut(s) 9, 55
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 2 cut(s) 330, 336
MslI CAYNNNNRTG 2 cut(s) 468, 1027
MspA1I CMGCKG 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 4 cut(s) 10, 56, 167, 187
MspR9I CCNGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 863
MvnI CGCG 3 cut(s) 120, 211, 1050
MwoI GCNNNNNNNGC 4 cut(s) 113, 172, 880, 948
NaeI GCCGGC 2 cut(s) 11, 57
NciI CCSGG 1 cut(s) 188
NdeII GATC 2 cut(s) 47, 121
NgoMIV GCCGGC 2 cut(s) 9, 55
NlaIII CATG 3 cut(s) 295, 768, 854
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 3 cut(s) 84, 169, 205
NruI TCGCGA 1 cut(s) 120
NspI RCATGY 1 cut(s) 854
NspV TTCGAA 1 cut(s) 969
OliI CACNNNNGTG 1 cut(s) 1027
PaeR7I CTCGAG 1 cut(s) 599
PciSI GCTCTTC 2 cut(s) 57, 99
PcsI WCGNNNNNNNCGW 1 cut(s) 891
PdiI GCCGGC 2 cut(s) 11, 57
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 4 cut(s) 199, 560, 888, 958
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PshAI GACNNNNGTC 1 cut(s) 865
Psp124BI GAGCTC 3 cut(s) 69, 94, 689
PspEI GGTNACC 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 3 cut(s) 7, 191, 288
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 2 cut(s) 681, 737
RsaNI GTAC 2 cut(s) 680, 736
RseI CAYNNNNRTG 2 cut(s) 468, 1027
SacI GAGCTC 3 cut(s) 69, 94, 689
SapI GCTCTTC 2 cut(s) 57, 99
SaqAI TTAA 2 cut(s) 330, 336
Sau3AI GATC 2 cut(s) 47, 121
Sau96I GGNCC 3 cut(s) 7, 191, 288
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 3 cut(s) 69, 94, 689
SfaNI GCATC 1 cut(s) 421
Sfr274I CTCGAG 1 cut(s) 599
SfuI TTCGAA 1 cut(s) 969
SgrAI CRCCGGYG 1 cut(s) 166
SinI GGWCC 2 cut(s) 191, 288
SlaI CTCGAG 1 cut(s) 599
SmiMI CAYNNNNRTG 2 cut(s) 468, 1027
SmlI CTYRAG 2 cut(s) 329, 599
SmoI CTYRAG 2 cut(s) 329, 599
Sse9I AATT 7 cut(s) 251, 337, 421, 550, 611, 646, 863
SspMI CTAG 3 cut(s) 318, 354, 876
SstI GAGCTC 3 cut(s) 69, 94, 689
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 6 cut(s) 20, 368, 569, 596, 730, 1029
TaqI TCGA 5 cut(s) 312, 600, 831, 969, 1011
TaqII GACCGA 1 cut(s) 208
TasI AATT 7 cut(s) 251, 337, 421, 550, 611, 646, 863
TatI WGTACW 1 cut(s) 735
TfiI GAWTC 4 cut(s) 199, 560, 888, 958
Tru1I TTAA 2 cut(s) 330, 336
Tru9I TTAA 2 cut(s) 330, 336
TscAI CASTG 2 cut(s) 745, 949
TseFI GTSAC 3 cut(s) 84, 169, 205
Tsp45I GTSAC 3 cut(s) 84, 169, 205
TspDTI ATGAA 1 cut(s) 753
TspGWI ACGGA 3 cut(s) 129, 900, 1010
TspRI CASTG 2 cut(s) 745, 949
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 191, 288
XceI RCATGY 1 cut(s) 854
XhoI CTCGAG 1 cut(s) 599
XmaJI CCTAGG 1 cut(s) 875
XmiI GTMKAC 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 3 cut(s) 318, 354, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.