RchiOBHm_Chr5g0034191

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000420
Physical Location & Seq
Reverse (-)
28089246 .. 28090019
774 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31322

Sequence Viewer

Length: 774 bp
ATGCCAGTTTTGATCCCTCCGTCCTTAGCCATACAGGTTACTATTCTGGTGGTGGCAGTGGCATTCGGTAGTCCAAAACGATCATATCAACCCAATAATGAGCCCTCATATCCTGTTGAGTTCAATGTCTGGAGCGTTGAAGAAACTGATGTACAAGACTTATTCGAGGTTTGTCATGGAAGTCTTCAATTTCAAAGAGACACTGACCACATGGGAAGCTTGACAAATCGCCTGCCTCAAAGTCCGATAAGATTTGCACTAAATGGATTCTGGTCACAATCTTCGGGAAAGCTTTGCATGGTGGGATCAGGTTCTATTTACTCCAAACAAGGTGACCTGCCTAGTGATGTTCCTGCTCTTCTCAAGCTGCATAATCTCATGAATTTCTCTAGTGTTACAAGGTTGATTAGTGGAACCCTGGAGAGCTTGATGATTTCTCAGAAAGATCCCAATTATTTTGAACCAATCTCTATTTTGATGTTTCCTCGTATGAACTATCAGTACACTTTGGTTTCTAATAAATCTAATGATAATAGCTCCTCCAGTGAAAGTGATGCTCCCAAAGATTCTTTGCAGATGGAGAAATTTTGTTCTGTAATCTCAGTAGTACCAGAATATTATCTTCAGTATTCGAGCCATTGCCTTTCTGCCAAGAACTCCACTACTCCTCTTTTTGGGTCTGGTCTTTTCCCTAGCATTGTTGCATTAAGGGGTATTGAGTGTTCGGAAGATAACCGGAGGTTGAGAGTTCTGATAGAATTTGCAGACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

257

Amino Acids

28.63

Weight (kDa)

5.23

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 60 - 157 3.8e-16 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AclWI GGATC 3 cut(s) 7, 313, 440
AcsI RAATTY 3 cut(s) 382, 584, 758
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 3 cut(s) 153, 503, 609
AfiI CCNNNNNNNGG 1 cut(s) 674
AgsI TTSAA 5 cut(s) 124, 140, 188, 194, 461
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 5 cut(s) 219, 292, 367, 426, 537
AluI AGCT 5 cut(s) 219, 292, 367, 426, 537
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 3 cut(s) 7, 313, 440
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 3 cut(s) 382, 584, 758
AsuHPI GGTGA 1 cut(s) 344
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 571
BciT130I CCWGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 342, 390, 693
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 3 cut(s) 151, 440, 526
Bpu10I CCTNAGC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 735
Bsc4I CCNNNNNNNGG 1 cut(s) 674
Bse1I ACTGG 2 cut(s) 5, 543
Bse3DI GCAATG 1 cut(s) 637
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMI GCAATG 1 cut(s) 637
BseMII CTCAG 2 cut(s) 452, 615
BseNI ACTGG 2 cut(s) 5, 543
BseRI GAGGAG 2 cut(s) 529, 657
BseXI GCAGC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 736
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 151
Bsp143I GATC 4 cut(s) 12, 80, 305, 445
BspCNI CTCAG 2 cut(s) 451, 614
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 415
BspMI ACCTGC 1 cut(s) 345
BspPI GGATC 3 cut(s) 7, 313, 440
BspQI GCTCTTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 637
BsrGI TGTACA 1 cut(s) 151
BsrI ACTGG 2 cut(s) 5, 543
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 4 cut(s) 12, 80, 305, 445
Bst2UI CCWGG 1 cut(s) 419
Bst6I CTCTTC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 25, 438, 601
BstEII GGTNACC 1 cut(s) 332
BstKTI GATC 4 cut(s) 15, 83, 308, 448
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 12, 80, 305, 445
BstNI CCWGG 1 cut(s) 419
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 63, 201, 550
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 233
CciI TCATGA 1 cut(s) 378
Csp6I GTAC 3 cut(s) 152, 502, 608
CviAII CATG 4 cut(s) 176, 211, 298, 379
CviJI RGCY 8 cut(s) 29, 103, 219, 292, 367, 426, 537, 636
CviKI_1 RGCY 8 cut(s) 29, 103, 219, 292, 367, 426, 537, 636
CviQI GTAC 3 cut(s) 152, 502, 608
DdeI CTNAG 3 cut(s) 25, 438, 601
DpnI GATC 4 cut(s) 14, 82, 307, 447
DpnII GATC 4 cut(s) 12, 80, 305, 445
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 608
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 4 cut(s) 179, 214, 301, 382
FaiI YATR 9 cut(s) 32, 85, 109, 177, 212, 299, 372, 380, 491
FatI CATG 4 cut(s) 175, 210, 297, 378
Fnu4HI GCNGC 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 3 cut(s) 342, 390, 693
GluI GCNGC 1 cut(s) 368
GsuI CTGGAG 3 cut(s) 151, 440, 526
HapII CCGG 1 cut(s) 736
Hin1II CATG 4 cut(s) 179, 214, 301, 382
HindIII AAGCTT 2 cut(s) 217, 290
HinfI GANTC 2 cut(s) 267, 566
HpaII CCGG 1 cut(s) 736
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 4 cut(s) 246, 441, 727, 753
Hpy188III TCNNGA 3 cut(s) 130, 285, 379
Hpy8I GTNNAC 1 cut(s) 504
HpyCH4V TGCA 6 cut(s) 257, 297, 370, 574, 704, 764
HpyF3I CTNAG 3 cut(s) 25, 438, 601
Hsp92II CATG 4 cut(s) 179, 214, 301, 382
Kzo9I GATC 4 cut(s) 12, 80, 305, 445
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 3 cut(s) 132, 542, 562
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 544
MaeI CTAG 3 cut(s) 342, 390, 693
MaeIII GTNAC 4 cut(s) 37, 273, 332, 394
MalI GATC 4 cut(s) 14, 82, 307, 447
MboI GATC 4 cut(s) 12, 80, 305, 445
MboII GAAGA 6 cut(s) 152, 176, 273, 350, 614, 740
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 5 cut(s) 188, 382, 451, 584, 758
MnlI CCTC 8 cut(s) 27, 115, 160, 246, 495, 550, 678, 732
MseI TTAA 1 cut(s) 707
MspI CCGG 1 cut(s) 736
MspR9I CCNGG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 419
NdeII GATC 4 cut(s) 12, 80, 305, 445
NlaIII CATG 4 cut(s) 179, 214, 301, 382
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 273, 332
PagI TCATGA 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 363
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 267, 566
PkrI GCNGC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 417
PspEI GGTNACC 1 cut(s) 332
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 415
PsrI GAACNNNNNNTAC 4 cut(s) 485, 517, 706, 738
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 3 cut(s) 153, 503, 609
RsaNI GTAC 3 cut(s) 152, 502, 608
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 4 cut(s) 12, 80, 305, 445
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 5 cut(s) 188, 382, 451, 584, 758
SspI AATATT 1 cut(s) 617
SspMI CTAG 3 cut(s) 342, 390, 693
StyD4I CCNGG 1 cut(s) 417
TaqI TCGA 2 cut(s) 165, 632
TasI AATT 5 cut(s) 188, 382, 451, 584, 758
TatI WGTACW 2 cut(s) 151, 501
TfiI GAWTC 2 cut(s) 267, 566
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TscAI CASTG 3 cut(s) 63, 208, 550
TseFI GTSAC 2 cut(s) 273, 332
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 2 cut(s) 273, 332
TspDTI ATGAA 2 cut(s) 395, 506
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 3 cut(s) 63, 208, 550
XapI RAATTY 3 cut(s) 382, 584, 758
XspI CTAG 3 cut(s) 342, 390, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.