RLG00000033530

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000420
Physical Location & Seq
Reverse (-)
28547676 .. 28548514
839 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033530

Sequence Viewer

Length: 612 bp
ATGAACCACCAGTACACTTTGGTTCCAAATGAATCTGATAACAGTTGTGCTAGCAGTGGAAGTGATGTTCCCCTCAGTTATTTGCCAACATGGAGATTTTGCTCTGAACTCTCAACAGCAGTAAGCCATGAATTTGATCTAAAATATTCGAGCCATTGCATTTCTGCAACAAACTGTAGTCCATTCCCTGTGTCCAGCCTGCCTCATGTTGTGTCGTTGAAGAGTATTGGGTGTTCAGAGGACACAAGAAGTTTGAGAGTTCTGCATTGTGGGAAAAAATTTGGAGCAGAGTTTCATTACTTTGAAGGCATGGCATTTGAAAGTCCTGTGAATATTCGAAGCACTCTACTTCCTGGGATGAATTATGAGTATTCAAAAATTAACAGAGCAATCAAGTTATTCCCGAGAAAAACTAGCAAGAAGTCTGCTTGTGGCATCTACCCACCTGCAGATCCATTTGCTGAGGACTTGAGTTTCTACATGTCATTTAAAAATTTTGAAGAAAGGTTCGCATGGGGTGGGGCTGCTCCAGTATTTGTTGGTGATAGGTTTTACAAGCAGTATTGGTATTCAAATGGCATTCCTGCAATCTCAAGAGCATTCATTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

204

Amino Acids

22.8

Weight (kDa)

8.13

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 3 cut(s) 131, 278, 493
AfaI GTAC 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 6 cut(s) 220, 305, 320, 375, 500, 573
AjnI CCWGG 1 cut(s) 352
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AlwI GGATC 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 3 cut(s) 131, 278, 493
AsuHPI GGTGA 1 cut(s) 554
AsuII TTCGAA 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 403
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 511
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 2 cut(s) 51, 414
BfmI CTRYAG 2 cut(s) 175, 447
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 403
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 444
BmtI GCTAGC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 490, 577
BsaJI CCNNGG 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 10, 530
Bse3DI GCAATG 2 cut(s) 154, 603
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 363
BseMI GCAATG 2 cut(s) 154, 603
BseMII CTCAG 2 cut(s) 88, 453
BseNI ACTGG 2 cut(s) 10, 530
BseXI GCAGC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 403
BsmI GAATGC 2 cut(s) 579, 599
BsoBI CYCGRG 1 cut(s) 403
Bsp119I TTCGAA 1 cut(s) 337
Bsp143I GATC 2 cut(s) 136, 451
BspCNI CTCAG 2 cut(s) 87, 454
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 454
BspOI GCTAGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 446
BspT104I TTCGAA 1 cut(s) 337
BsrDI GCAATG 2 cut(s) 154, 603
BsrI ACTGG 2 cut(s) 10, 530
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 2 cut(s) 136, 451
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 44, 176
Bst6I CTCTTC 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 52, 200
BstDEI CTNAG 2 cut(s) 74, 462
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 2 cut(s) 139, 454
BstMBI GATC 2 cut(s) 136, 451
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 2 cut(s) 175, 447
BstV1I GCAGC 1 cut(s) 511
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BtsCI GGATG 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 52, 200
Csp6I GTAC 1 cut(s) 13
CviAII CATG 7 cut(s) 90, 128, 206, 310, 481, 513, 609
CviJI RGCY 4 cut(s) 126, 153, 198, 524
CviKI_1 RGCY 4 cut(s) 126, 153, 198, 524
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 74, 462
DpnI GATC 2 cut(s) 138, 453
DpnII GATC 2 cut(s) 136, 451
DraI TTTAAA 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 7 cut(s) 93, 131, 209, 313, 484, 516, 612
FaiI YATR 8 cut(s) 91, 129, 207, 311, 366, 482, 514, 610
FatI CATG 7 cut(s) 89, 127, 205, 309, 480, 512, 608
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 2 cut(s) 51, 414
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 513
Hin1II CATG 7 cut(s) 93, 131, 209, 313, 484, 516, 612
HinfI GANTC 1 cut(s) 32
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 37, 106, 238
Hpy188III TCNNGA 2 cut(s) 403, 594
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 44, 176
HpyCH4V TGCA 6 cut(s) 159, 167, 265, 449, 587, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 2 cut(s) 74, 462
Hsp92II CATG 7 cut(s) 93, 131, 209, 313, 484, 516, 612
Kzo9I GATC 2 cut(s) 136, 451
LmnI GCTCC 2 cut(s) 284, 532
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 1 cut(s) 444
MaeI CTAG 2 cut(s) 51, 414
MalI GATC 2 cut(s) 138, 453
MboI GATC 2 cut(s) 136, 451
MboII GAAGA 2 cut(s) 232, 512
MflI RGATCY 1 cut(s) 451
MluCI AATT 5 cut(s) 131, 278, 361, 378, 493
MnlI CCTC 4 cut(s) 83, 213, 232, 457
MseI TTAA 2 cut(s) 381, 489
MspR9I CCNGG 1 cut(s) 354
Mva1269I GAATGC 2 cut(s) 579, 599
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeII GATC 2 cut(s) 136, 451
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 7 cut(s) 93, 131, 209, 313, 484, 516, 612
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 1 cut(s) 484
NspV TTCGAA 1 cut(s) 337
PaqCI CACCTGC 1 cut(s) 454
PciI ACATGT 1 cut(s) 480
PctI GAATGC 2 cut(s) 579, 599
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 526
PscI ACATGT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 24
PsrI GAACNNNNNNTAC 3 cut(s) 28, 217, 249
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 381, 489
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 2 cut(s) 136, 451
ScrFI CCNGG 1 cut(s) 354
SetI ASST 3 cut(s) 448, 509, 551
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 2 cut(s) 175, 447
SfuI TTCGAA 1 cut(s) 337
SmlI CTYRAG 2 cut(s) 469, 592
SmoI CTYRAG 2 cut(s) 469, 592
Sse9I AATT 5 cut(s) 131, 278, 361, 378, 493
SspI AATATT 2 cut(s) 146, 334
SspMI CTAG 2 cut(s) 51, 414
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 44, 176
TaqI TCGA 2 cut(s) 149, 337
TasI AATT 5 cut(s) 131, 278, 361, 378, 493
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 2 cut(s) 381, 489
Tru9I TTAA 2 cut(s) 381, 489
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 6 cut(s) 17, 45, 144, 284, 374, 592
TspRI CASTG 1 cut(s) 61
XapI RAATTY 3 cut(s) 131, 278, 493
XceI RCATGY 1 cut(s) 484
XspI CTAG 2 cut(s) 51, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.