Rh5DG060100

Protein of unknown function (DUF2921)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
5069958 .. 5070896
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG060100.1

Sequence Viewer

Length: 903 bp
ATGGTTGGTACTGTTTCTCACACCAGTTCCGAGTCTCTGGTTGCTCTGAAGCTTAATTATCCCAAAAATACTAGTATTTTCGATATTTTAGTGACCGGGACTTTGGAGAGTGTTTCTGATGAGATAGATTTGAATTATTTTGAACCCATTTCGATACTGGGGTTATCTCGGAAATCTGGTTATCAGCCCACATTCATTGGGAATGGTCGTCTGAATGGCTCTTTGCGTTGTGGTGGTTTTGGTTTTACGGTAGAAAGATATGAATTGGAATATGAGAGTGGTAATGGCAATCCTCTTGGTGGAGATGTTGGATATGTACCTAAGTTCTTTGGTTTTCGTAGGACTCGGTGTGAGGATGGGAAGATGCAGATGTTGTTGGGGTTTCCCAACTCGAGTTTTCATGGACGGGGTAGTACTTTTCCCTTTGAACCTAGGACAAGTTTGATTGCTGAAGGGGAATGGATTGAGAAGGAGAATCGTATGTTAGCCGTTGCGTGCAGGATTTTGAATTTTACGGAGTCATTGACTAATGCTGTTGTGGGAGATTGTTCGACTAGACTCAGCTTTAGGTTACCTGCACGGGTGTCTTTAAGAAATAGGTCTAGTATTGTGGGGCAAATTTGGAGCAACAGAGCGGTGAATGACTCTGGTTACTTTGGTAAAATTGGGTTTCACAGAGTGTCGGAGCAGTTGATGAAATTCTTACCAGGTTACAAATACGAATTCACTGAGCATGACACAGTGAGGAAAACTTGTGATGAAAAGAAGACCAATGAAGGAAAAAGAAAGAAATACCCTGATGAGCATTTGTTGGAAATGACGCTTCAAATGGCAGTGAGAAACAGTACAGGGCAAACAGCTGAATGGGTTCATGTATCCCCATTGTTTGTGGATGGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

300

Amino Acids

33.69

Weight (kDa)

7.65

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 1 - 51 2.5e-07 DUF2921 lipocalin-like domain
DUF2921_N PF25333 109 - 222 5.7e-24 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccBSI CCGCTC 1 cut(s) 635
AciI CCGC 1 cut(s) 635
AcsI RAATTY 4 cut(s) 508, 618, 698, 722
AcuI CTGAAG 2 cut(s) 68, 471
AdeI CACNNNGTG 1 cut(s) 679
AfaI GTAC 4 cut(s) 10, 318, 415, 847
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 5 cut(s) 133, 143, 428, 508, 827
AhlI ACTAGT 1 cut(s) 71
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 3 cut(s) 52, 564, 860
AluI AGCT 3 cut(s) 52, 564, 860
Alw26I GTCTC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 391
ApoI RAATTY 4 cut(s) 508, 618, 698, 722
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
Asp700I GAANNNNTTC 1 cut(s) 867
AspA2I CCTAGG 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 649
AvaI CYCGRG 1 cut(s) 391
AvrII CCTAGG 1 cut(s) 431
BaeI ACNNNNGTAYC 2 cut(s) 146, 179
BbsI GAAGAC 1 cut(s) 773
BccI CCATC 2 cut(s) 350, 887
BceAI ACGGC 1 cut(s) 473
BciT130I CCWGG 1 cut(s) 708
BciVI GTATCC 1 cut(s) 886
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 39
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 4 cut(s) 72, 432, 555, 603
BfuAI ACCTGC 1 cut(s) 583
BfuI GTATCC 1 cut(s) 886
BlnI CCTAGG 1 cut(s) 431
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 2 cut(s) 97, 708
BmeT110I CYCGRG 1 cut(s) 391
BmrFI CCNGG 2 cut(s) 97, 708
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 773
BpuMI CCSGG 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 24, 162
BseBI CCWGG 1 cut(s) 708
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 2 cut(s) 361, 898
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 574, 720
BseNI ACTGG 2 cut(s) 24, 162
BsgI GTGCAG 2 cut(s) 517, 561
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 391
BspACI CCGC 1 cut(s) 635
BspCNI CTCAG 2 cut(s) 573, 721
BspMI ACCTGC 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 635
BsrI ACTGG 2 cut(s) 24, 162
BssECI CCNNGG 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 4 cut(s) 13, 250, 742, 845
BstC8I GCNNGC 1 cut(s) 496
BstDEI CTNAG 3 cut(s) 321, 560, 729
BstEII GGTNACC 1 cut(s) 570
BstF5I GGATG 2 cut(s) 361, 898
BstMAI GTCTC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 708
BstPI GGTNACC 1 cut(s) 570
BstSCI CCNGG 2 cut(s) 95, 706
BstV2I GAAGAC 1 cut(s) 773
BsuI GTATCC 1 cut(s) 886
BtsCI GGATG 2 cut(s) 361, 898
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 3 cut(s) 726, 747, 840
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 1 cut(s) 496
CseI GACGC 1 cut(s) 829
CsiI ACCWGGT 1 cut(s) 706
Csp6I GTAC 4 cut(s) 9, 317, 414, 846
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 3 cut(s) 401, 734, 872
CviJI RGCY 6 cut(s) 52, 187, 219, 488, 564, 860
CviKI_1 RGCY 6 cut(s) 52, 187, 219, 488, 564, 860
CviQI GTAC 4 cut(s) 9, 317, 414, 846
DdeI CTNAG 3 cut(s) 321, 560, 729
DraIII CACNNNGTG 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 68, 471
Eco88I CYCGRG 1 cut(s) 391
Eco91I GGTNACC 1 cut(s) 570
EcoO65I GGTNACC 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 3 cut(s) 404, 737, 875
FaiI YATR 7 cut(s) 261, 273, 315, 402, 482, 735, 873
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 400, 733, 871
FokI GGATG 1 cut(s) 368
FspBI CTAG 4 cut(s) 72, 432, 555, 603
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 829
Hin1II CATG 3 cut(s) 404, 737, 875
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 6 cut(s) 32, 343, 475, 518, 558, 644
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 649
Hpy188I TCNGA 6 cut(s) 31, 48, 118, 171, 213, 685
HpyAV CCTTC 3 cut(s) 446, 463, 770
HpyCH4III ACNGT 4 cut(s) 13, 250, 742, 845
HpyCH4V TGCA 3 cut(s) 367, 498, 578
HpyF3I CTNAG 3 cut(s) 321, 560, 729
Hsp92II CATG 3 cut(s) 404, 737, 875
LmnI GCTCC 2 cut(s) 624, 685
LweI GCATC 1 cut(s) 354
MabI ACCWGGT 1 cut(s) 706
MaeI CTAG 4 cut(s) 72, 432, 555, 603
MaeIII GTNAC 4 cut(s) 91, 570, 650, 710
MbiI CCGCTC 1 cut(s) 635
MboII GAAGA 2 cut(s) 373, 778
MluCI AATT 8 cut(s) 55, 133, 263, 508, 618, 663, 698, 722
MlyI GAGTC 5 cut(s) 41, 337, 527, 552, 638
MmeI TCCRAC 3 cut(s) 289, 663, 792
MnlI CCTC 3 cut(s) 303, 346, 738
MroXI GAANNNNTTC 1 cut(s) 867
MseI TTAA 2 cut(s) 54, 590
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 97, 708
MvaI CCWGG 1 cut(s) 708
NciI CCSGG 1 cut(s) 97
NlaIII CATG 3 cut(s) 404, 737, 875
NmuCI GTSAC 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 867
PfeI GAWTC 1 cut(s) 475
PleI GAGTC 5 cut(s) 40, 337, 526, 552, 638
PpsI GAGTC 5 cut(s) 40, 337, 526, 552, 638
Psp6I CCWGG 1 cut(s) 706
PspEI GGTNACC 1 cut(s) 570
PspGI CCWGG 1 cut(s) 706
PspXI VCTCGAGB 1 cut(s) 391
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 4 cut(s) 10, 318, 415, 847
RsaNI GTAC 4 cut(s) 9, 317, 414, 846
SaqAI TTAA 2 cut(s) 54, 590
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 5 cut(s) 41, 337, 527, 552, 638
ScrFI CCNGG 2 cut(s) 97, 708
SetI ASST 9 cut(s) 54, 322, 433, 566, 572, 577, 602, 712, 862
SexAI ACCWGGT 1 cut(s) 706
SfaNI GCATC 1 cut(s) 354
Sfr274I CTCGAG 1 cut(s) 391
SlaI CTCGAG 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 8 cut(s) 55, 133, 263, 508, 618, 663, 698, 722
SsiI CCGC 1 cut(s) 635
SspMI CTAG 4 cut(s) 72, 432, 555, 603
StyD4I CCNGG 2 cut(s) 95, 706
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 4 cut(s) 13, 250, 742, 845
TaqI TCGA 4 cut(s) 81, 152, 392, 551
TasI AATT 8 cut(s) 55, 133, 263, 508, 618, 663, 698, 722
TatI WGTACW 2 cut(s) 413, 845
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 2 cut(s) 54, 590
Tru9I TTAA 2 cut(s) 54, 590
TscAI CASTG 3 cut(s) 733, 747, 840
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 7 cut(s) 184, 276, 389, 710, 774, 789, 860
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 3 cut(s) 733, 747, 840
XapI RAATTY 4 cut(s) 508, 618, 698, 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 391
XmaJI CCTAGG 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 867
XspI CTAG 4 cut(s) 72, 432, 555, 603
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.