RLG00000031567

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000420
Physical Location & Seq
Reverse (-)
6265561 .. 6266567
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031567

Sequence Viewer

Length: 681 bp
ATGGCAGTGAGAAACAGTAAAGGGCAAACTGAATGGGTTCATGTATCCCCATTGTTTGTGGATGGTGATCGAAGTCATGCTGGGCTTTGGGATAAACTGCTGAAGAAAAGCCATAGTAGTGTGGTGAATATGAGCTATGATTTAACCTTCAGTTTCGTGCATGACTATAATTTCTTTGATTATGGTACCTCAGTTTCAACAAAAGTATATGCTGAAGGAATATATGATAGGGATAATGGTAATCTATGCATGATAGCATGTAGGCATGTATTGTCAAAAGATCAAGAATTGATGGAAAAGGATACGCTAGACTGTGCTATCAAAATTAATCTCCAGTTTTCTCCATTGGATGCCAAGAATCGTAGAATTGTCAATGGGACTATTGAAAGCACAAGGAGAAAGTCAGACCCTCTTTATTTTGAGCTTATGGAGTTATTATACTCGGGTTCCATTACCGAAAGGCAAGCTGATAAGTTTCTTGGCACTGGTGAATGGCACAAGGTGAATGAAGTAATTGTCAGCGTGATGATGTTGGTAGTTTTCCTGCTGCAGCTACGGCTTCTCCAGCTGACCTGGTGCTTGAGACAAGTGGATCCGTACTCACCACACCTCATACATACCACTACACGTCCATTTACCTCTTCATCTTGTTCGCCAGCGACGTCACAATCTCTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

227

Amino Acids

25.78

Weight (kDa)

6.7

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 37 - 143 4.2e-29 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 665
Acc65I GGTACC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 185
AclWI GGATC 2 cut(s) 587, 600
AcuI CTGAAG 3 cut(s) 122, 133, 234
AcyI GRCGYC 1 cut(s) 662
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 2 cut(s) 187, 599
AflIII ACRYGT 1 cut(s) 626
AgsI TTSAA 2 cut(s) 198, 386
AjiI CACGTC 1 cut(s) 629
AjnI CCWGG 1 cut(s) 572
AluBI AGCT 5 cut(s) 135, 424, 467, 553, 568
AluI AGCT 5 cut(s) 135, 424, 467, 553, 568
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 2 cut(s) 587, 600
Ama87I CYCGRG 1 cut(s) 442
ApeKI GCWGC 2 cut(s) 547, 550
AseI ATTAAT 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 185
AsuHPI GGTGA 5 cut(s) 77, 136, 500, 514, 594
AvaI CYCGRG 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BamHI GGATCC 1 cut(s) 592
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 534, 562
BccI CCATC 2 cut(s) 56, 286
BceAI ACGGC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 574
BciVI GTATCC 2 cut(s) 55, 295
BcoDI GTCTC 1 cut(s) 577
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 548
BfuI GTATCC 2 cut(s) 55, 295
BisI GCNGC 2 cut(s) 548, 551
BlsI GCNGC 2 cut(s) 549, 552
Bme1390I CCNGG 1 cut(s) 574
BmeT110I CYCGRG 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 629
BmiI GGNNCC 3 cut(s) 187, 448, 594
BmrFI CCNGG 1 cut(s) 574
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 2 cut(s) 317, 548
BpuEI CTTGAG 1 cut(s) 601
BsaBI GATNNNNATC 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bse1I ACTGG 2 cut(s) 334, 490
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 1 cut(s) 574
BseGI GGATG 2 cut(s) 67, 355
BseJI GATNNNNATC 1 cut(s) 66
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 334, 490
BseXI GCAGC 2 cut(s) 534, 562
BseYI CCCAGC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 442
BslFI GGGAC 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 577
BsmFI GGGAC 1 cut(s) 391
BsoBI CYCGRG 1 cut(s) 442
Bsp143I GATC 3 cut(s) 67, 280, 592
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 3 cut(s) 187, 448, 594
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 2 cut(s) 587, 600
BspT107I GGYRCC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 334, 490
BssMI GATC 3 cut(s) 67, 280, 592
BssNI GRCGYC 1 cut(s) 662
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 2 cut(s) 17, 314
Bst6I CTCTTC 1 cut(s) 646
BstACI GRCGYC 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 465, 657
BstDEI CTNAG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 67, 355
BstKTI GATC 3 cut(s) 70, 283, 595
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 3 cut(s) 67, 280, 592
BstMWI GCNNNNNNNGC 2 cut(s) 556, 565
BstNI CCWGG 1 cut(s) 574
BstNSI RCATGY 2 cut(s) 261, 269
BstSCI CCNGG 1 cut(s) 572
BstSFI CTRYAG 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 534, 562
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BsuI GTATCC 2 cut(s) 55, 295
BtrI CACGTC 1 cut(s) 629
BtsCI GGATG 2 cut(s) 67, 355
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 483
Cac8I GCNNGC 2 cut(s) 465, 657
CsiI ACCWGGT 1 cut(s) 572
Csp6I GTAC 2 cut(s) 186, 598
CviAII CATG 6 cut(s) 41, 77, 161, 250, 258, 266
CviJI RGCY 8 cut(s) 85, 111, 135, 424, 467, 553, 559, 568
CviKI_1 RGCY 8 cut(s) 85, 111, 135, 424, 467, 553, 559, 568
CviQI GTAC 2 cut(s) 186, 598
DdeI CTNAG 1 cut(s) 190
DpnI GATC 3 cut(s) 69, 282, 594
DpnII GATC 3 cut(s) 67, 280, 592
DraIII CACNNNGTG 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 646
EarI CTCTTC 1 cut(s) 646
Eco57I CTGAAG 3 cut(s) 122, 133, 234
Eco88I CYCGRG 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 572
EcoT22I ATGCAT 1 cut(s) 251
FaeI CATG 6 cut(s) 44, 80, 164, 253, 261, 269
FaqI GGGAC 1 cut(s) 391
FatI CATG 6 cut(s) 40, 76, 160, 249, 257, 265
Fnu4HI GCNGC 2 cut(s) 548, 551
FokI GGATG 2 cut(s) 74, 362
Fsp4HI GCNGC 2 cut(s) 548, 551
FspBI CTAG 1 cut(s) 308
GluI GCNGC 2 cut(s) 548, 551
GsaI CCCAGC 1 cut(s) 84
GsuI CTGGAG 2 cut(s) 317, 548
Hin1I GRCGYC 1 cut(s) 662
Hin1II CATG 6 cut(s) 44, 80, 164, 253, 261, 269
HinfI GANTC 1 cut(s) 358
HphI GGTGA 5 cut(s) 77, 136, 500, 514, 594
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 2 cut(s) 157, 209
HpyCH4III ACNGT 2 cut(s) 17, 314
HpyCH4IV ACGT 2 cut(s) 628, 662
HpyCH4V TGCA 3 cut(s) 160, 249, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 556, 565
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 2 cut(s) 628, 662
Hsp92I GRCGYC 1 cut(s) 662
Hsp92II CATG 6 cut(s) 44, 80, 164, 253, 261, 269
KpnI GGTACC 1 cut(s) 189
Kzo9I GATC 3 cut(s) 67, 280, 592
LpnPI CCDG 9 cut(s) 66, 347, 471, 557, 559, 578, 586, 659, 669
Lsp1109I GCAGC 2 cut(s) 534, 562
LweI GCATC 1 cut(s) 340
MabI ACCWGGT 1 cut(s) 572
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 628, 662
MaeIII GTNAC 1 cut(s) 663
MalI GATC 3 cut(s) 69, 282, 594
MboI GATC 3 cut(s) 67, 280, 592
MboII GAAGA 2 cut(s) 115, 633
MflI RGATCY 1 cut(s) 592
MluCI AATT 5 cut(s) 169, 287, 324, 366, 513
MnlI CCTC 4 cut(s) 199, 420, 620, 649
Mph1103I ATGCAT 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 2 cut(s) 143, 327
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 568
MspR9I CCNGG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 574
MwoI GCNNNNNNNGC 2 cut(s) 556, 565
NdeII GATC 3 cut(s) 67, 280, 592
NlaIII CATG 6 cut(s) 44, 80, 164, 253, 261, 269
NlaIV GGNNCC 3 cut(s) 187, 448, 594
NmuCI GTSAC 1 cut(s) 663
NsiI ATGCAT 1 cut(s) 251
NspI RCATGY 2 cut(s) 261, 269
PcsI WCGNNNNNNNCGW 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 549, 552
PshBI ATTAAT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 3 cut(s) 187, 448, 594
PstI CTGCAG 1 cut(s) 552
PsuI RGATCY 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 2 cut(s) 187, 599
RsaNI GTAC 2 cut(s) 186, 598
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 2 cut(s) 143, 327
SatI GCNGC 2 cut(s) 548, 551
Sau3AI GATC 3 cut(s) 67, 280, 592
ScrFI CCNGG 1 cut(s) 574
SexAI ACCWGGT 1 cut(s) 572
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
Sse9I AATT 5 cut(s) 169, 287, 324, 366, 513
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 572
TaaI ACNGT 2 cut(s) 17, 314
TaiI ACGT 2 cut(s) 631, 665
TaqI TCGA 1 cut(s) 70
TasI AATT 5 cut(s) 169, 287, 324, 366, 513
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 2 cut(s) 143, 327
Tru9I TTAA 2 cut(s) 143, 327
TscAI CASTG 2 cut(s) 12, 490
TseFI GTSAC 1 cut(s) 663
TseI GCWGC 2 cut(s) 547, 550
Tsp45I GTSAC 1 cut(s) 663
TspDTI ATGAA 3 cut(s) 29, 522, 633
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 2 cut(s) 12, 490
VspI ATTAAT 1 cut(s) 327
XceI RCATGY 2 cut(s) 261, 269
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 663
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.