RchiOBHm_Chr5g0034181

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000420
Physical Location & Seq
Reverse (-)
28087935 .. 28089230
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31321

Sequence Viewer

Length: 1296 bp
ATGACTTTCAATCCCAATACAACTTTGGTTGGGGAGGGATCAAGGGATGTAAACAAAACTCAGCTACAAGTTGTTGCATGTCATTTCTTGGACGCGAGAAGTTCATTCAACAATTCTCATGTGGGTGATTGCTCAACAAGATTGAGCTTGACATTTCCTGGAATATGGACAATTAGAGATACCAGAAATGCTGCAGGGCACATTTGGAGCAACAAAGCTGTGGCAGAGTCAGGTTACTTTGAAAAGATTGCATTTGGTAGTCTTATGAATTATGATGGAGACGTGCAATGTGCAGGTCAGAACTATGAGTATACCCAAATTGAAAAGGTAACCAAGTTGTGCCCTAGAGAGAAGAACGCTGCTGCCACTGATTACAAGACCAAGGTATACACAAATCCCTTTTTATATGACATGAGGTTCCATATGTTTTCTAAAAGATCTAAAAGCGTAGTGGATCGGGGCCGTTCTTATCCTCTTTCTGTTGGAAATCGGTTGTACAGATATGGAACATTTATTGAAGATGCGTACTCACTTGCATATACCCACAGCGGCCCTTACAATATTAGCTTCTTTATATTCATCAATGTGAGTAATATGTCAATTGCAAATGTGATATCTGCTGAAGGGGTCTATGATGATACAGATGGAAGCATGTGCATGGTAGGCTGCCGAAATCTAGGCCAGATAGATCAACAGCCAACTGATGATTCTGTAGATTGTGAGATTCTACTCAAACTTCAGTTGCCTCCAGCAACTCCAGGGAGGAAGATCTCAGGTTATGTCAAGGGGAGCATTGAAAGCATACGGAAAAAGTCTGATCCTCTTCATTTTGAACGTTTAGACTTGTCTTCAGATGACATGTTTATGGCTGAAGCAGATCGATCCATTTGTAGGTTGGAGGTGGAGACCACCTTGGTTCTTATATCCACCACACTTGCATATGTTTTTGGGGCATTACAACTCTTCCATATGAACAAACGTCCAGATGTGCTTCCCTCCATTTCAATCTTGATGCTGCTAGTTCTAACCCTTGGGTTTTTGAAACCTCTTATATATTACTTTGAAGCCATCCTCACCTATAGCACCGATTACCAGGATGTGTTCATTGGAAGTGATGGATGGCTTCAAGTTGATCAGGCAAATCTGAGGGCAATAGCAGTTATGATAATGCTAGCTTTCTTGTTGCACTTCAACCTTTTGCAGCAAACATGGTCAGCAAGATCTGCGAAAGGGACCTTGAAGGACCTTTGGAATGAGAGAAGAAAGCTTTGTCAGTATATGCAGTTGGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

431

Amino Acids

48.77

Weight (kDa)

6.71

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 2 - 83 4.7e-17 DUF2921 lipocalin-like domain
DUF2921_N PF25333 111 - 281 6.3e-27 DUF2921 lipocalin-like domain
DUF2921 PF11145 293 - 423 2.7e-19 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AccI GTMKAC 2 cut(s) 311, 387
AccII CGCG 1 cut(s) 95
AciI CCGC 1 cut(s) 549
AclI AACGTT 1 cut(s) 835
AclWI GGATC 4 cut(s) 46, 462, 812, 876
AcuI CTGAAG 4 cut(s) 642, 722, 834, 891
AfaI GTAC 2 cut(s) 497, 527
AfiI CCNNNNNNNGG 1 cut(s) 891
AflIII ACRYGT 1 cut(s) 858
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 3 cut(s) 157, 757, 1092
AjuI GAANNNNNNNTTGG 2 cut(s) 691, 723
AluBI AGCT 6 cut(s) 64, 147, 218, 567, 1175, 1267
AluI AGCT 6 cut(s) 64, 147, 218, 567, 1175, 1267
Alw26I GTCTC 2 cut(s) 273, 899
AlwI GGATC 4 cut(s) 46, 462, 812, 876
AoxI GGCC 3 cut(s) 460, 550, 679
ApeKI GCWGC 6 cut(s) 191, 359, 362, 666, 1015, 1201
AspS9I GGNCC 4 cut(s) 460, 551, 1233, 1243
AsuHPI GGTGA 2 cut(s) 137, 1066
AsuNHI GCTAGC 1 cut(s) 1171
AvaII GGWCC 2 cut(s) 1233, 1243
BaeGI GKGCMC 2 cut(s) 201, 344
BbsI GAAGAC 1 cut(s) 840
BbvI GCAGC 6 cut(s) 178, 346, 349, 653, 1002, 1213
BccI CCATC 5 cut(s) 269, 638, 1076, 1109, 1113
BceAI ACGGC 1 cut(s) 447
BciT130I CCWGG 3 cut(s) 159, 759, 1094
BclI TGATCA 1 cut(s) 1132
BcoDI GTCTC 2 cut(s) 273, 899
BfaI CTAG 4 cut(s) 345, 677, 1019, 1172
BfmI CTRYAG 3 cut(s) 192, 711, 1078
BfuAI ACCTGC 1 cut(s) 284
BglII AGATCT 3 cut(s) 437, 768, 1220
BisI GCNGC 7 cut(s) 192, 360, 363, 550, 667, 1016, 1202
BlsI GCNGC 7 cut(s) 193, 361, 364, 551, 668, 1017, 1203
Bme1390I CCNGG 3 cut(s) 159, 759, 1094
Bme18I GGWCC 2 cut(s) 1233, 1243
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 4 cut(s) 460, 551, 1233, 1243
BmiI GGNNCC 3 cut(s) 419, 461, 1234
BmrFI CCNGG 3 cut(s) 159, 759, 1094
BmsI GCATC 2 cut(s) 511, 1002
BmtI GCTAGC 1 cut(s) 1175
BpiI GAAGAC 1 cut(s) 840
BpmI CTGGAG 2 cut(s) 732, 741
Bsa29I ATCGAT 1 cut(s) 880
BsaI GGTCTC 1 cut(s) 899
BsaJI CCNNGG 4 cut(s) 381, 758, 912, 1030
Bsc4I CCNNNNNNNGG 1 cut(s) 891
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 3 cut(s) 159, 759, 1094
BseCI ATCGAT 1 cut(s) 880
BseDI CCNNGG 4 cut(s) 381, 758, 912, 1030
BseGI GGATG 4 cut(s) 52, 1068, 1102, 1124
BseLI CCNNNNNNNGG 1 cut(s) 891
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 74, 786, 1136
BseSI GKGCMC 2 cut(s) 201, 344
BseXI GCAGC 6 cut(s) 178, 346, 349, 653, 1002, 1213
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 3 cut(s) 462, 552, 681
BshVI ATCGAT 1 cut(s) 880
BslFI GGGAC 1 cut(s) 1246
BslI CCNNNNNNNGG 1 cut(s) 891
BsmAI GTCTC 2 cut(s) 273, 899
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 1246
BsnI GGCC 3 cut(s) 462, 552, 681
Bso31I GGTCTC 1 cut(s) 899
Bsp1286I GDGCHC 2 cut(s) 201, 344
Bsp1407I TGTACA 1 cut(s) 495
BspACI CCGC 1 cut(s) 549
BspANI GGCC 3 cut(s) 462, 552, 681
BspCNI CTCAG 3 cut(s) 73, 785, 1137
BspDI ATCGAT 1 cut(s) 880
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 419, 461, 1234
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 284
BspOI GCTAGC 1 cut(s) 1175
BspPI GGATC 4 cut(s) 46, 462, 812, 876
BspTNI GGTCTC 1 cut(s) 899
BsrDI GCAATG 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 495
BssECI CCNNGG 4 cut(s) 381, 758, 912, 1030
BssNAI GTATAC 2 cut(s) 312, 388
BssT1I CCWWGG 3 cut(s) 381, 912, 1030
Bst1107I GTATAC 2 cut(s) 312, 388
Bst2UI CCWGG 3 cut(s) 159, 759, 1094
Bst6I CTCTTC 2 cut(s) 828, 968
BstAPI GCANNNNNTGC 1 cut(s) 1223
BstAUI TGTACA 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 1173
BstDEI CTNAG 3 cut(s) 60, 772, 1145
BstEII GGTNACC 1 cut(s) 328
BstF5I GGATG 4 cut(s) 52, 1068, 1102, 1124
BstFNI CGCG 1 cut(s) 95
BstMAI GTCTC 2 cut(s) 273, 899
BstMWI GCNNNNNNNGC 3 cut(s) 663, 798, 1223
BstNI CCWGG 3 cut(s) 159, 759, 1094
BstNSI RCATGY 3 cut(s) 81, 655, 862
BstPI GGTNACC 1 cut(s) 328
BstSCI CCNGG 3 cut(s) 157, 757, 1092
BstSFI CTRYAG 3 cut(s) 192, 711, 1078
BstSLI GKGCMC 2 cut(s) 201, 344
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 6 cut(s) 178, 346, 349, 653, 1002, 1213
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 3 cut(s) 437, 768, 1220
BstYI RGATCY 3 cut(s) 437, 768, 1220
BstZ17I GTATAC 2 cut(s) 312, 388
Bsu15I ATCGAT 1 cut(s) 880
BsuRI GGCC 3 cut(s) 462, 552, 681
BsuTUI ATCGAT 1 cut(s) 880
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 4 cut(s) 52, 1068, 1102, 1124
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 1173
Cfr13I GGNCC 4 cut(s) 460, 551, 1233, 1243
ClaI ATCGAT 1 cut(s) 880
CseI GACGC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 496, 526
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviAII CATG 7 cut(s) 78, 119, 412, 652, 658, 859, 1209
CviQI GTAC 2 cut(s) 496, 526
DdeI CTNAG 3 cut(s) 60, 772, 1145
Eam1104I CTCTTC 2 cut(s) 828, 968
EarI CTCTTC 2 cut(s) 828, 968
Eco130I CCWWGG 3 cut(s) 381, 912, 1030
Eco31I GGTCTC 1 cut(s) 899
Eco32I GATATC 1 cut(s) 615
Eco47I GGWCC 2 cut(s) 1233, 1243
Eco57I CTGAAG 4 cut(s) 642, 722, 834, 891
Eco91I GGTNACC 1 cut(s) 328
EcoO109I RGGNCCY 2 cut(s) 1233, 1243
EcoO65I GGTNACC 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 157, 757, 1092
EcoRV GATATC 1 cut(s) 615
EcoT14I CCWWGG 3 cut(s) 381, 912, 1030
ErhI CCWWGG 3 cut(s) 381, 912, 1030
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 7 cut(s) 81, 122, 415, 655, 661, 862, 1212
FaqI GGGAC 1 cut(s) 1246
FatI CATG 7 cut(s) 77, 118, 411, 651, 657, 858, 1208
FauNDI CATATG 3 cut(s) 423, 940, 969
FbaI TGATCA 1 cut(s) 1132
FblI GTMKAC 2 cut(s) 311, 387
Fnu4HI GCNGC 7 cut(s) 192, 360, 363, 550, 667, 1016, 1202
FokI GGATG 4 cut(s) 59, 1055, 1109, 1131
Fsp4HI GCNGC 7 cut(s) 192, 360, 363, 550, 667, 1016, 1202
FspBI CTAG 4 cut(s) 345, 677, 1019, 1172
GluI GCNGC 7 cut(s) 192, 360, 363, 550, 667, 1016, 1202
GsuI CTGGAG 2 cut(s) 732, 741
HaeIII GGCC 3 cut(s) 462, 552, 681
HgaI GACGC 1 cut(s) 101
Hin1II CATG 7 cut(s) 81, 122, 415, 655, 661, 862, 1212
HindIII AAGCTT 1 cut(s) 1265
HinfI GANTC 3 cut(s) 227, 707, 724
HphI GGTGA 2 cut(s) 137, 1066
Hpy166II GTNNAC 3 cut(s) 52, 312, 388
Hpy188I TCNGA 4 cut(s) 300, 817, 853, 1146
Hpy188III TCNNGA 2 cut(s) 983, 1009
Hpy8I GTNNAC 3 cut(s) 52, 312, 388
HpyAV CCTTC 2 cut(s) 617, 1234
HpyCH4IV ACGT 3 cut(s) 282, 835, 979
HpyF10VI GCNNNNNNNGC 3 cut(s) 663, 798, 1223
HpyF3I CTNAG 3 cut(s) 60, 772, 1145
HpySE526I ACGT 3 cut(s) 282, 835, 979
Hsp92II CATG 7 cut(s) 81, 122, 415, 655, 661, 862, 1212
Ksp22I TGATCA 1 cut(s) 1132
LmnI GCTCC 2 cut(s) 207, 789
Lsp1109I GCAGC 6 cut(s) 178, 346, 349, 653, 1002, 1213
LweI GCATC 2 cut(s) 511, 1002
MaeI CTAG 4 cut(s) 345, 677, 1019, 1172
MaeII ACGT 3 cut(s) 282, 835, 979
MaeIII GTNAC 2 cut(s) 233, 328
MboII GAAGA 7 cut(s) 364, 530, 778, 815, 840, 955, 1272
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 3 cut(s) 437, 768, 1220
MhlI GDGCHC 2 cut(s) 201, 344
MluCI AATT 5 cut(s) 112, 171, 268, 318, 600
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 463, 876
MslI CAYNNNNRTG 4 cut(s) 123, 584, 656, 863
MspA1I CMGCKG 1 cut(s) 549
MspR9I CCNGG 3 cut(s) 159, 759, 1094
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 3 cut(s) 159, 759, 1094
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 663, 798, 1223
NdeI CATATG 3 cut(s) 423, 940, 969
NheI GCTAGC 1 cut(s) 1171
NlaIII CATG 7 cut(s) 81, 122, 415, 655, 661, 862, 1212
NlaIV GGNNCC 3 cut(s) 419, 461, 1234
NspI RCATGY 3 cut(s) 81, 655, 862
PciI ACATGT 1 cut(s) 858
PfeI GAWTC 2 cut(s) 707, 724
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 7 cut(s) 193, 361, 364, 551, 668, 1017, 1203
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 2 cut(s) 1233, 1243
PscI ACATGT 1 cut(s) 858
Psp1406I AACGTT 1 cut(s) 835
Psp5II RGGWCCY 2 cut(s) 1233, 1243
Psp6I CCWGG 3 cut(s) 157, 757, 1092
PspEI GGTNACC 1 cut(s) 328
PspGI CCWGG 3 cut(s) 157, 757, 1092
PspN4I GGNNCC 3 cut(s) 419, 461, 1234
PspPI GGNCC 4 cut(s) 460, 551, 1233, 1243
PspPPI RGGWCCY 2 cut(s) 1233, 1243
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 3 cut(s) 437, 768, 1220
RsaI GTAC 2 cut(s) 497, 527
RsaNI GTAC 2 cut(s) 496, 526
RseI CAYNNNNRTG 4 cut(s) 123, 584, 656, 863
SatI GCNGC 7 cut(s) 192, 360, 363, 550, 667, 1016, 1202
Sau96I GGNCC 4 cut(s) 460, 551, 1233, 1243
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 3 cut(s) 159, 759, 1094
SduI GDGCHC 2 cut(s) 201, 344
SfaNI GCATC 2 cut(s) 511, 1002
SfcI CTRYAG 3 cut(s) 192, 711, 1078
SinI GGWCC 2 cut(s) 1233, 1243
SmiMI CAYNNNNRTG 4 cut(s) 123, 584, 656, 863
Sse9I AATT 5 cut(s) 112, 171, 268, 318, 600
SsiI CCGC 1 cut(s) 549
SspI AATATT 1 cut(s) 562
SspMI CTAG 4 cut(s) 345, 677, 1019, 1172
StyD4I CCNGG 3 cut(s) 157, 757, 1092
StyI CCWWGG 3 cut(s) 381, 912, 1030
TaiI ACGT 3 cut(s) 285, 838, 982
TaqI TCGA 1 cut(s) 880
TasI AATT 5 cut(s) 112, 171, 268, 318, 600
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 552
TfiI GAWTC 2 cut(s) 707, 724
TscAI CASTG 1 cut(s) 373
TseI GCWGC 6 cut(s) 191, 359, 362, 666, 1015, 1201
TspDTI ATGAA 6 cut(s) 93, 281, 568, 815, 986, 1093
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 1233, 1243
XceI RCATGY 3 cut(s) 81, 655, 862
XcmI CCANNNNNNNNNTGG 2 cut(s) 22, 892
XmiI GTMKAC 2 cut(s) 311, 387
XspI CTAG 4 cut(s) 345, 677, 1019, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.