RchiOBHm_Chr5g0034171

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000420
Physical Location & Seq
Reverse (-)
28087507 .. 28087929
423 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31320

Sequence Viewer

Length: 423 bp
ATGGCGCTTCTGATGAATTCAAGTCATCAAGAGCATCCCATTTTGGGTTTAAGTAGCTGTGGTGCTTATGCTGGTTTGGTGTTGGATGGCTTTCTGTTTCCTCAAATTGTACTCAACATGGTCTGCAAATCAAAGGATAAGGCTCTGTCAGTTGGGTTCTACATCGGAACAACTTTTGTTCGAATCCTGCCACATGCATATGATTTTTACAGGACTGGCAGCTCTGATTTGGTCTTGGAAGAGCCATATGTTTTTGTAAGTCCTGTGGCTGGTTTTTACTCCACTGCTTGGGATCTCATTATTCCTATGGGAGCTCTACTGTTTTCTGTAATCATTTTCTTGCAGCACAAGTTTGGGGGTCGTTGCTTTCTTCCTCAAAAGTTGAGGGAGTTGGGTGATAAGAAGGTCCCAAAAAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

140

Amino Acids

15.56

Weight (kDa)

8.45

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921 PF11145 22 - 128 2.1e-27 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 288
AclWI GGATC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 44, 269, 288
AgsI TTSAA 1 cut(s) 21
AluBI AGCT 3 cut(s) 57, 222, 314
AluI AGCT 3 cut(s) 57, 222, 314
Alw21I GWGCWC 1 cut(s) 316
AlwI GGATC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 219, 343
ApoI RAATTY 1 cut(s) 16
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 1 cut(s) 407
AsuII TTCGAA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 231, 355
BccI CCATC 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 220, 344
BlsI GCNGC 2 cut(s) 221, 345
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 408
BmsI GCATC 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 181
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 269, 288
Bse1I ACTGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 34, 91
BseLI CCNNNNNNNGG 3 cut(s) 44, 269, 288
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 231, 355
BsiHKAI GWGCWC 1 cut(s) 316
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 3 cut(s) 44, 269, 288
BsmFI GGGAC 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 234
BspT104I TTCGAA 1 cut(s) 181
BsrI ACTGG 1 cut(s) 220
BssMI GATC 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 181
BstF5I GGATG 2 cut(s) 34, 91
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 231, 355
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtsCI GGATG 2 cut(s) 34, 91
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 110
CviAII CATG 2 cut(s) 118, 194
CviJI RGCY 7 cut(s) 57, 90, 143, 222, 244, 269, 314
CviKI_1 RGCY 7 cut(s) 57, 90, 143, 222, 244, 269, 314
CviQI GTAC 1 cut(s) 110
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 2 cut(s) 121, 197
FaiI YATR 8 cut(s) 69, 119, 195, 199, 201, 247, 249, 308
FaqI GGGAC 1 cut(s) 392
FatI CATG 2 cut(s) 117, 193
FauNDI CATATG 2 cut(s) 199, 247
Fnu4HI GCNGC 2 cut(s) 220, 344
FokI GGATG 2 cut(s) 21, 98
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 2 cut(s) 220, 344
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 220, 344
HaeII RGCGCY 1 cut(s) 8
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 121, 197
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 183
HphI GGTGA 1 cut(s) 407
Hpy188I TCNGA 3 cut(s) 12, 167, 226
Hpy188III TCNNGA 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 126, 197, 343
Hsp92II CATG 2 cut(s) 121, 197
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 292
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 57, 196, 200, 201, 255, 276
Lsp1109I GCAGC 2 cut(s) 231, 355
LweI GCATC 1 cut(s) 43
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 251, 362
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 16, 105
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 3 cut(s) 111, 378, 384
Mph1103I ATGCAT 1 cut(s) 199
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 198
NdeI CATATG 2 cut(s) 199, 247
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 121, 197
NlaIV GGNNCC 1 cut(s) 408
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 1 cut(s) 197
NspV TTCGAA 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 2 cut(s) 221, 345
PpuMI RGGWCCY 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 1 cut(s) 406
PspPPI RGGWCCY 1 cut(s) 406
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 316
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 2 cut(s) 220, 344
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 406
SduI GDGCHC 1 cut(s) 316
SetI ASST 4 cut(s) 59, 224, 316, 408
SfaNI GCATC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 181
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 2 cut(s) 16, 105
SstI GAGCTC 1 cut(s) 316
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 181
TasI AATT 2 cut(s) 16, 105
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 289
TseI GCWGC 2 cut(s) 219, 343
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 16
XceI RCATGY 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.