FvH4_1g10360

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000420
Physical Location & Seq
Reverse (-)
5658402 .. 5660162
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10360.t1

Sequence Viewer

Length: 954 bp
ATGAACGAAATTGGATATGTATCCTTTTTGGTCTGTGTCAACCTAAATTCGCTGCTCTCTCTCTCTCTCTGCCGTCGTCGCCCCGCACCCGCCCTCTCTCTCGAATCCGTCGTCGCGATCTCTGCCTCCCGCCGCCGTCGCGAGCTCGGCCTCCCTCCGCAGTCGTCGCTCGCGATCTCTCTCTCTCTCTCTTCCGTCGTCGCTCTCGAGCCTCCCCCGCCGGCGACGCTGGTGAACTTTCGGGGACCGAGGATTCCGGTCACGCGGGGTGTGGTGAGGTTCAGGCTTGATGGGTATTATTCGGAATTCGATAAGAAGCTGTGTATGATTGGGAAGAGTAGGTCCATGTATAATGCAGGTAACTTCGAGCCTAATGTTGTTCTTAAGCTTAATTATCCGAAATGGTCTAGCATTTATGACAATTTAATTAGTGGGAGCTTAGAGAGTGTTGTTAGTGACAAGGATGATGGTGAGAATTATTTTGATGCTATTATGGTGTTGACTTTTTCTGTGAAGCATAGTTATGGGTATACATTTGTTGGGGAAGATAGGATGAGTAGTTTTCCGAGTAGTGTTGAGAGTGGAGAGAGTATAGGTTTGAGTAATTTGAATGATTCGAACGGTGGTTTGTGTAGGTTGCTTGGTAACCGTCTCGAGAGATTTGAATTGGTGTATGGGAGTGAGTGTGGTGGGGGTGTGAATTGCAATCCTCTTGGTGGGGATGTTGGATATGTACCGAGCTCGTTGTCTAAATCTTTGGGAGATGACGAGTCTGAACATACTGTTGAGTTCACTGGTGGGAATGATTTCAGAACTTCATGGGATATCAAGGCCACTCCTACTTTCTTCTTCCTCCGAGATGGTCAACAAGTTGACAAGCTTGTCGGAGCCAACAAGGTAGAGTTGCAAAAGAAGATAGTTGCCATTGTAGATTCAACCCCATGTAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

318

Amino Acids

34.66

Weight (kDa)

6.22

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 67 - 164 1.1e-11 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 881
Acc36I ACCTGC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 530
AccII CGCG 4 cut(s) 116, 141, 173, 265
AciI CCGC 7 cut(s) 84, 90, 130, 133, 158, 218, 265
AcsI RAATTY 2 cut(s) 46, 305
AfaI GTAC 1 cut(s) 735
AfiI CCNNNNNNNGG 1 cut(s) 716
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 610, 665, 936
AluBI AGCT 6 cut(s) 145, 319, 388, 438, 741, 880
AluI AGCT 6 cut(s) 145, 319, 388, 438, 741, 880
Alw21I GWGCWC 2 cut(s) 147, 743
Alw26I GTCTC 1 cut(s) 656
Ama87I CYCGRG 2 cut(s) 206, 653
AoxI GGCC 2 cut(s) 148, 831
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 46, 305
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 1 cut(s) 806
AspS9I GGNCC 2 cut(s) 245, 342
AsuHPI GGTGA 3 cut(s) 244, 286, 482
AsuII TTCGAA 1 cut(s) 617
AvaI CYCGRG 2 cut(s) 206, 653
AvaII GGWCC 2 cut(s) 245, 342
BanII GRGCYC 2 cut(s) 147, 743
Bbv12I GWGCWC 2 cut(s) 147, 743
BbvI GCAGC 1 cut(s) 39
BccI CCATC 3 cut(s) 284, 461, 854
BceAI ACGGC 2 cut(s) 57, 120
BciVI GTATCC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 347
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 2 cut(s) 53, 133
BlsI GCNGC 2 cut(s) 54, 134
Bme18I GGWCC 2 cut(s) 245, 342
BmeT110I CYCGRG 2 cut(s) 206, 653
BmgT120I GGNCC 2 cut(s) 245, 342
BmiI GGNNCC 2 cut(s) 246, 889
BmsI GCATC 1 cut(s) 475
Bpu14I TTCGAA 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 799
Bse8I GATNNNNATC 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 3 cut(s) 469, 558, 727
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 716
BseNI ACTGG 1 cut(s) 799
BseXI GCAGC 1 cut(s) 39
Bsh1236I CGCG 4 cut(s) 116, 141, 173, 265
BshFI GGCC 2 cut(s) 150, 833
BsiHKAI GWGCWC 2 cut(s) 147, 743
BsiHKCI CYCGRG 2 cut(s) 206, 653
BsiSI CCGG 2 cut(s) 221, 257
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 716
BsmAI GTCTC 1 cut(s) 656
BsmBI CGTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 2 cut(s) 150, 833
BsoBI CYCGRG 2 cut(s) 206, 653
Bsp119I TTCGAA 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 147, 743
Bsp143I GATC 2 cut(s) 117, 174
Bsp68I TCGCGA 3 cut(s) 116, 141, 173
BspACI CCGC 7 cut(s) 84, 90, 130, 133, 158, 218, 265
BspANI GGCC 2 cut(s) 150, 833
BspFNI CGCG 4 cut(s) 116, 141, 173, 265
BspLI GGNNCC 2 cut(s) 246, 889
BspMI ACCTGC 1 cut(s) 347
BspT104I TTCGAA 1 cut(s) 617
BspTI CTTAAG 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 799
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 2 cut(s) 117, 174
BssNAI GTATAC 1 cut(s) 531
Bst1107I GTATAC 1 cut(s) 531
Bst4CI ACNGT 3 cut(s) 623, 650, 784
Bst6I CTCTTC 2 cut(s) 196, 329
BstAFI CTTAAG 1 cut(s) 383
BstBI TTCGAA 1 cut(s) 617
BstC8I GCNNGC 3 cut(s) 143, 171, 222
BstDEI CTNAG 1 cut(s) 439
BstEII GGTNACC 1 cut(s) 644
BstF5I GGATG 3 cut(s) 469, 558, 727
BstFNI CGCG 4 cut(s) 116, 141, 173, 265
BstKTI GATC 2 cut(s) 120, 177
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 2 cut(s) 117, 174
BstMWI GCNNNNNNNGC 7 cut(s) 78, 122, 138, 147, 166, 217, 226
BstPI GGTNACC 1 cut(s) 644
BstUI CGCG 4 cut(s) 116, 141, 173, 265
BstV1I GCAGC 1 cut(s) 39
BstZ17I GTATAC 1 cut(s) 531
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 150, 833
BtsCI GGATG 3 cut(s) 469, 558, 727
BtsIMutI CAGTG 1 cut(s) 792
BtuMI TCGCGA 3 cut(s) 116, 141, 173
BveI ACCTGC 1 cut(s) 347
Cac8I GCNNGC 3 cut(s) 143, 171, 222
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 245, 342
CseI GACGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 734
CviAII CATG 3 cut(s) 346, 819, 942
CviQI GTAC 1 cut(s) 734
DdeI CTNAG 1 cut(s) 439
DpnI GATC 2 cut(s) 119, 176
DpnII GATC 2 cut(s) 117, 174
DrdI GACNNNNNNGTC 1 cut(s) 881
DseDI GACNNNNNNGTC 1 cut(s) 881
Eam1104I CTCTTC 2 cut(s) 196, 329
EarI CTCTTC 2 cut(s) 196, 329
Ecl136II GAGCTC 2 cut(s) 145, 741
Eco24I GRGCYC 2 cut(s) 147, 743
Eco32I GATATC 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 245, 342
Eco53kI GAGCTC 2 cut(s) 145, 741
Eco88I CYCGRG 2 cut(s) 206, 653
Eco91I GGTNACC 1 cut(s) 644
EcoICRI GAGCTC 2 cut(s) 145, 741
EcoO65I GGTNACC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 305
EcoRV GATATC 1 cut(s) 826
EcoT38I GRGCYC 2 cut(s) 147, 743
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 3 cut(s) 349, 822, 945
FaqI GGGAC 1 cut(s) 258
FatI CATG 3 cut(s) 345, 818, 941
FauI CCCGC 5 cut(s) 91, 97, 137, 225, 258
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 2 cut(s) 53, 133
FokI GGATG 3 cut(s) 476, 565, 734
FriOI GRGCYC 2 cut(s) 147, 743
Fsp4HI GCNGC 2 cut(s) 53, 133
FspBI CTAG 1 cut(s) 408
GluI GCNGC 2 cut(s) 53, 133
HaeIII GGCC 2 cut(s) 150, 833
HapII CCGG 2 cut(s) 221, 257
HgaI GACGC 1 cut(s) 235
Hin1II CATG 3 cut(s) 349, 822, 945
HincII GTYRAC 4 cut(s) 40, 501, 866, 874
HindII GTYRAC 4 cut(s) 40, 501, 866, 874
HindIII AAGCTT 2 cut(s) 386, 878
HinfI GANTC 5 cut(s) 104, 253, 614, 770, 932
HpaII CCGG 2 cut(s) 221, 257
HphI GGTGA 3 cut(s) 244, 286, 482
Hpy166II GTNNAC 7 cut(s) 40, 235, 501, 531, 792, 866, 874
Hpy188I TCNGA 7 cut(s) 304, 399, 567, 775, 812, 857, 887
Hpy188III TCNNGA 7 cut(s) 101, 115, 140, 172, 206, 653, 655
Hpy8I GTNNAC 7 cut(s) 40, 235, 501, 531, 792, 866, 874
Hpy99I CGWCG 9 cut(s) 78, 81, 113, 116, 141, 169, 200, 203, 229
HpyCH4III ACNGT 3 cut(s) 623, 650, 784
HpyCH4V TGCA 3 cut(s) 356, 705, 907
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 122, 138, 147, 166, 217, 226
HpyF3I CTNAG 1 cut(s) 439
Hsp92II CATG 3 cut(s) 349, 822, 945
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 117, 174
LmnI GCTCC 2 cut(s) 435, 887
LpnPI CCDG 6 cut(s) 215, 234, 268, 270, 342, 780
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 4 cut(s) 259, 359, 455, 644
MalI GATC 2 cut(s) 119, 176
MboI GATC 2 cut(s) 117, 174
MboII GAAGA 6 cut(s) 183, 346, 557, 838, 841, 925
MhlI GDGCHC 2 cut(s) 147, 743
MlyI GAGTC 1 cut(s) 779
MmeI TCCRAC 2 cut(s) 706, 865
MnlI CCTC 9 cut(s) 104, 136, 161, 165, 222, 243, 270, 720, 863
MreI CGCCGGCG 1 cut(s) 220
MroNI GCCGGC 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 806
MseI TTAA 3 cut(s) 384, 390, 425
MslI CAYNNNNRTG 1 cut(s) 522
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 2 cut(s) 221, 257
MvnI CGCG 4 cut(s) 116, 141, 173, 265
MwoI GCNNNNNNNGC 7 cut(s) 78, 122, 138, 147, 166, 217, 226
NaeI GCCGGC 1 cut(s) 222
NdeII GATC 2 cut(s) 117, 174
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 3 cut(s) 349, 822, 945
NlaIV GGNNCC 2 cut(s) 246, 889
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 2 cut(s) 259, 455
NruI TCGCGA 3 cut(s) 116, 141, 173
NspV TTCGAA 1 cut(s) 617
PaeR7I CTCGAG 2 cut(s) 206, 653
PcsI WCGNNNNNNNCGW 3 cut(s) 108, 170, 204
PdiI GCCGGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 806
PfeI GAWTC 4 cut(s) 104, 253, 614, 932
PkrI GCNGC 2 cut(s) 54, 134
PleI GAGTC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 778
Psp124BI GAGCTC 2 cut(s) 147, 743
PspEI GGTNACC 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 246, 889
PspPI GGNCC 2 cut(s) 245, 342
RruI TCGCGA 3 cut(s) 116, 141, 173
RsaI GTAC 1 cut(s) 735
RsaNI GTAC 1 cut(s) 734
RseI CAYNNNNRTG 1 cut(s) 522
SacI GAGCTC 2 cut(s) 147, 743
SaqAI TTAA 3 cut(s) 384, 390, 425
SatI GCNGC 2 cut(s) 53, 133
Sau3AI GATC 2 cut(s) 117, 174
Sau96I GGNCC 2 cut(s) 245, 342
SchI GAGTC 1 cut(s) 779
SduI GDGCHC 2 cut(s) 147, 743
SfaNI GCATC 1 cut(s) 475
Sfr274I CTCGAG 2 cut(s) 206, 653
SfuI TTCGAA 1 cut(s) 617
SgrAI CRCCGGYG 1 cut(s) 220
SinI GGWCC 2 cut(s) 245, 342
SlaI CTCGAG 2 cut(s) 206, 653
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 3 cut(s) 206, 383, 653
SmoI CTYRAG 3 cut(s) 206, 383, 653
SsiI CCGC 7 cut(s) 84, 90, 130, 133, 158, 218, 265
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 2 cut(s) 147, 743
TaaI ACNGT 3 cut(s) 623, 650, 784
TaqI TCGA 6 cut(s) 102, 207, 309, 366, 617, 654
TaqII GACCGA 1 cut(s) 262
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 4 cut(s) 104, 253, 614, 932
Tru1I TTAA 3 cut(s) 384, 390, 425
Tru9I TTAA 3 cut(s) 384, 390, 425
TscAI CASTG 1 cut(s) 799
TseFI GTSAC 2 cut(s) 259, 455
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 2 cut(s) 259, 455
TspDTI ATGAA 2 cut(s) 17, 807
TspGWI ACGGA 2 cut(s) 97, 184
TspRI CASTG 1 cut(s) 799
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 245, 342
XapI RAATTY 2 cut(s) 46, 305
XhoI CTCGAG 2 cut(s) 206, 653
XmiI GTMKAC 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 806
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.