FvH4_3g20351

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000420
Physical Location & Seq
Reverse (-)
13411866 .. 13412654
789 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20351.t1

Sequence Viewer

Length: 789 bp
ATGGATGTGGAGATCATATTGGTTGTTATATCCAGAACAGTTGCTTGTGTTTTTGGGGCATTACAACTCTTTCATGTGAAAAGGCATCCAGTGGTGCTTCCATCCATTTCTATATTGATGCTGCTTATTCTTGTTCTACGTTACATGATACCTCTTATGCTGCACTTTGATGCCATGTTCACACACCACAGTAGTGAAACCGTGTTGCTTCAAACATTAGGCAGTGGATGGCTTGAAGTCAATGAAGTAATTTTAAGTGTCATAACAATGGTAGGTTTCTTGCTGCAACTTCGTCTTCTACTGTTAACAATGTCAGCAAGAGCAGCAAATGAAAACCGAAAGGTACTTTGGTCTTTGGAGAAGCTGGCTCTTTTTGTGGCTCTACCAGTATATGTTGCAGGATCCTTAGTTGCCCTGCTTCTGATGAACTTGAGATGGGACTATATTGTTGCGATGGTTTTAGGGTATCAGGGGCATAAGAACTTGGATACCTTTTCGAAAACTTGTGGTGGTTTGGTTTTGGATGCATTTTTGTTGCCTCAAATTCTGCTCAACATGTTCACCAAATCAACGGAAAAGGCTTTGTCCGTCTCGTTCTACATTGGAACAACTCTTGTACGAGTGCTCCCACATGCATATGAGCTTTATAGGGATCATAGTACTTCTGCTCAATACCAATTATATGAGCCATACATTTATGCAGGTCCTGCGACATATGTTTACTCTACTGCTTGGAATGTCATTATTCCTTATGGAGGTATACTTTTTGCTGGGATAATTTATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

263

Amino Acids

29.46

Weight (kDa)

7.8

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921 PF11145 1 - 262 4.5e-43 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 692
AccI GTMKAC 1 cut(s) 760
AclWI GGATC 3 cut(s) 396, 409, 660
AcsI RAATTY 1 cut(s) 543
AfaI GTAC 3 cut(s) 345, 618, 661
AfiI CCNNNNNNNGG 1 cut(s) 755
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 212, 236
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 2 cut(s) 364, 643
AluI AGCT 2 cut(s) 364, 643
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 1 cut(s) 595
AlwI GGATC 3 cut(s) 396, 409, 660
AlwNI CAGNNNCTG 1 cut(s) 707
ApeKI GCWGC 4 cut(s) 121, 160, 283, 323
ApoI RAATTY 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 704
AsuHPI GGTGA 1 cut(s) 553
AsuII TTCGAA 1 cut(s) 497
AvaII GGWCC 1 cut(s) 704
BaeI ACNNNNGTAYC 2 cut(s) 335, 368
BamHI GGATCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 4 cut(s) 108, 147, 270, 335
BccI CCATC 4 cut(s) 109, 222, 429, 448
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 595
BfmI CTRYAG 1 cut(s) 785
BfuAI ACCTGC 1 cut(s) 692
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 4 cut(s) 122, 161, 284, 324
BlsI GCNGC 4 cut(s) 123, 162, 285, 325
BmcAI AGTACT 1 cut(s) 661
Bme18I GGWCC 1 cut(s) 704
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 1 cut(s) 403
BmsI GCATC 4 cut(s) 94, 108, 160, 514
BpiI GAAGAC 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 451
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse1I ACTGG 2 cut(s) 89, 386
BseGI GGATG 5 cut(s) 10, 85, 101, 233, 529
BseLI CCNNNNNNNGG 1 cut(s) 755
BseNI ACTGG 2 cut(s) 89, 386
BseXI GCAGC 4 cut(s) 108, 147, 270, 335
BseYI CCCAGC 1 cut(s) 770
BsgI GTGCAG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 627
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 755
BsmAI GTCTC 1 cut(s) 595
BsmBI CGTCTC 1 cut(s) 595
BsmFI GGGAC 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 3 cut(s) 12, 401, 652
BspLI GGNNCC 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 3 cut(s) 396, 409, 660
BspT104I TTCGAA 1 cut(s) 497
BsrI ACTGG 2 cut(s) 89, 386
BssMI GATC 3 cut(s) 12, 401, 652
BssNAI GTATAC 1 cut(s) 761
Bst1107I GTATAC 1 cut(s) 761
Bst4CI ACNGT 4 cut(s) 40, 191, 202, 303
BstAPI GCANNNNNTGC 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 406
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 5 cut(s) 10, 85, 101, 233, 529
BstKTI GATC 3 cut(s) 15, 404, 655
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 3 cut(s) 12, 401, 652
BstMWI GCNNNNNNNGC 2 cut(s) 323, 707
BstNSI RCATGY 2 cut(s) 559, 635
BstSFI CTRYAG 1 cut(s) 785
BstV1I GCAGC 4 cut(s) 108, 147, 270, 335
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BstZ17I GTATAC 1 cut(s) 761
BsuI GTATCC 1 cut(s) 481
BtgZI GCGATG 1 cut(s) 467
BtsCI GGATG 5 cut(s) 10, 85, 101, 233, 529
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 96, 229
BveI ACCTGC 1 cut(s) 692
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 707
Cfr13I GGNCC 1 cut(s) 704
Csp6I GTAC 3 cut(s) 344, 617, 660
CviAII CATG 5 cut(s) 74, 145, 175, 556, 632
CviJI RGCY 7 cut(s) 232, 364, 368, 380, 581, 643, 688
CviKI_1 RGCY 7 cut(s) 232, 364, 368, 380, 581, 643, 688
CviQI GTAC 3 cut(s) 344, 617, 660
DdeI CTNAG 1 cut(s) 406
DpnI GATC 3 cut(s) 14, 403, 654
DpnII GATC 3 cut(s) 12, 401, 652
Eco47I GGWCC 1 cut(s) 704
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 704
EcoT22I ATGCAT 2 cut(s) 529, 637
Esp3I CGTCTC 1 cut(s) 595
FaeI CATG 5 cut(s) 77, 148, 178, 559, 635
FaqI GGGAC 1 cut(s) 452
FatI CATG 5 cut(s) 73, 144, 174, 555, 631
FauNDI CATATG 2 cut(s) 637, 715
FblI GTMKAC 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 122, 161, 284, 324
FokI GGATG 5 cut(s) 17, 72, 88, 240, 536
Fsp4HI GCNGC 4 cut(s) 122, 161, 284, 324
GluI GCNGC 4 cut(s) 122, 161, 284, 324
GsaI CCCAGC 1 cut(s) 774
Hin1II CATG 5 cut(s) 77, 148, 178, 559, 635
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HpaI GTTAAC 1 cut(s) 306
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 5 cut(s) 180, 306, 561, 721, 761
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 5 cut(s) 180, 306, 561, 721, 761
HpyCH4III ACNGT 4 cut(s) 40, 191, 202, 303
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 6 cut(s) 163, 286, 398, 527, 635, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 707
HpyF3I CTNAG 1 cut(s) 406
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 5 cut(s) 77, 148, 178, 559, 635
KspAI GTTAAC 1 cut(s) 306
Kzo9I GATC 3 cut(s) 12, 401, 652
LmnI GCTCC 1 cut(s) 630
Lsp1109I GCAGC 4 cut(s) 108, 147, 270, 335
LweI GCATC 4 cut(s) 94, 108, 160, 514
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 140
MalI GATC 3 cut(s) 14, 403, 654
MboI GATC 3 cut(s) 12, 401, 652
MboII GAAGA 1 cut(s) 287
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 4 cut(s) 249, 543, 677, 777
MnlI CCTC 3 cut(s) 162, 549, 749
Mph1103I ATGCAT 2 cut(s) 529, 637
MseI TTAA 2 cut(s) 254, 305
MslI CAYNNNNRTG 4 cut(s) 168, 192, 266, 636
MwoI GCNNNNNNNGC 2 cut(s) 323, 707
NdeI CATATG 2 cut(s) 637, 715
NdeII GATC 3 cut(s) 12, 401, 652
NlaIII CATG 5 cut(s) 77, 148, 178, 559, 635
NlaIV GGNNCC 1 cut(s) 403
NsiI ATGCAT 2 cut(s) 529, 637
NspI RCATGY 2 cut(s) 559, 635
NspV TTCGAA 1 cut(s) 497
OliI CACNNNNGTG 1 cut(s) 192
PciI ACATGT 1 cut(s) 555
PkrI GCNGC 4 cut(s) 123, 162, 285, 325
PpuMI RGGWCCY 1 cut(s) 704
PscI ACATGT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 704
PspFI CCCAGC 1 cut(s) 770
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 1 cut(s) 704
PspPPI RGGWCCY 1 cut(s) 704
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 1 cut(s) 401
RsaI GTAC 3 cut(s) 345, 618, 661
RsaNI GTAC 3 cut(s) 344, 617, 660
RseI CAYNNNNRTG 4 cut(s) 168, 192, 266, 636
SaqAI TTAA 2 cut(s) 254, 305
SatI GCNGC 4 cut(s) 122, 161, 284, 324
Sau3AI GATC 3 cut(s) 12, 401, 652
Sau96I GGNCC 1 cut(s) 704
ScaI AGTACT 1 cut(s) 661
SduI GDGCHC 1 cut(s) 627
SetI ASST 9 cut(s) 142, 154, 277, 345, 366, 494, 645, 706, 760
SfaNI GCATC 4 cut(s) 94, 108, 160, 514
SfcI CTRYAG 1 cut(s) 785
SfuI TTCGAA 1 cut(s) 497
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 4 cut(s) 168, 192, 266, 636
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 4 cut(s) 249, 543, 677, 777
TaaI ACNGT 4 cut(s) 40, 191, 202, 303
TaiI ACGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 497
TasI AATT 4 cut(s) 249, 543, 677, 777
TatI WGTACW 1 cut(s) 659
Tru1I TTAA 2 cut(s) 254, 305
Tru9I TTAA 2 cut(s) 254, 305
TscAI CASTG 2 cut(s) 96, 229
TseI GCWGC 4 cut(s) 121, 160, 283, 323
TspDTI ATGAA 4 cut(s) 62, 258, 345, 440
TspGWI ACGGA 2 cut(s) 577, 587
TspRI CASTG 2 cut(s) 96, 229
VpaK11BI GGWCC 1 cut(s) 704
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 1 cut(s) 543
XceI RCATGY 2 cut(s) 559, 635
XmiI GTMKAC 1 cut(s) 760
ZrmI AGTACT 1 cut(s) 661
Zsp2I ATGCAT 2 cut(s) 529, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.