RchiOBHm_Chr5g0034271

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000420
Physical Location & Seq
Reverse (-)
28121778 .. 28124961
3184 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31329

Sequence Viewer

Length: 2730 bp
ATGGTCATCTTTTTCCCTATGACAATCTTCATGAAGCTTTTCATATCCTTCTTTGTTTTTACCACCATATCCTTCAATTCGATGTCATTCTTTGCTTCAGCTGTTCAAATTTCTTATGCTGACCATTGTGCTTCAGTTGTTCCTGAGTCAACCGAAAAAATAAATGCACGATCTCACTTGGTACATCTGATTCACACAGGTTACTACTACACTGGTGGTGGCAGTGACATTCTTAATCTATACTCGCCAAATGATCAGGTCAAAAATTCTATTGGCTTCCAATGCTGGGACATTAGAGAAACTAATGTACAAGGGTTGTTCAAGGTTGAAGGAACTCTTGAGTTTCAAGTAACCCACAGGCATGAGCAGCAAAGCCTGCCAGTTCAAACATTTCCAGGTTCCGTTTCCTTTAGACTAAATGGATTCTGGTCAGAATCTTCTGGGAAGCTTTGCATGGTCGGATCATCATCCATTTACTCAGCACAAGGTAAACTTCTTGTTCTTAAGCTGTACAATATCATGAATTCCACTAGTGTTACAAGTTTGATTAGTGGAACCTTCGAGCATGTCATGATAACTGAGAATGATCCCAAGTATTTGGGACCAATCTCTATTTTGCTATTCCCTCGCATGAACTACAAGTACACTTTGGTCTCAACTAATTCTAATAACAGTTGCTCTGGTGGAAGTGAAGATACCCCAAGCTCTTTACAAGTAGAGAGATTTTGTTCACTACTATCATCAGTGGTACTAAATCATGACTTTCAACTCAAATATTCAAGCCACTGTGTTACTGCAAAGAACTGCACCCCAATTTCTATGTCTGATTGGCCTTGGGCTGTATCGTTGAAGGACATTGTGTGTTCAGAGGATAAACGAAGGGTGAGAGTTCTGGTAGAATTTGTAGACGATTGGCCAATCTGGCATCCAAGGCTCTTCAATCCTAGTACAAGTTTAGTTGGTGAAGGCTCATGGGATGCAGAGAAGAATCAGCTATGTATCATTGCTTGTCGAATCTTGAATGAAACAAATTCTTTGAATAATACTAATGTGGGTGATTGTTCAACAAGATTGAGCTTGAGATTTCCTGCAACAGGGACAATTGGAAGTACCAGCAGCATTGTGGGGCATATTTGGAGCACCAAAACTGTGACAGAGTTGGGCTACTTTGAAAAGATCACATTTGCCAGTGGGGAGGACTGTAGTTATCAAGAGTGTCTGCTTCCAGCTGGACAGAAATACGAGTATACTAAAATGGACAAAGTAACAGAGTTGTGCTCGAGAAAGAAGGCTGCTAATGACAAGGCCAGCATTTACCCAAATCTGTTGTTGCATGCCATGAGTTTCATTATGCATGCTGAAAATTCTGAAGGGCAAGTTGGTACAGGCAATGGTGTTCCCCTTTCTGTTGGCGATCAATTTTACAAGACCGATTATTCAACTGTAAGCAATCAAGAATACTCTTTGGCTCCTCTAAGTCACAGCTACAACTACAGCAGCTCCTACAATATTAGCTACAAAATAGACCTCCATCTACAATCTAATCCAGCGTTGGGCAAACAGTCAGTTATATATGATATGCACATCTCTGCTGAAGGGATCTATGATGATACAGAAGGAAGCCTGTGCATGGTAGGATGCCGCAATCTTGGCTCAAACAGTCAGCAGGCAACAAATGATTCAATAGATTGTGAGATTCTTGTCAATTTTCAGTTCCCACCAACAAAGGCAAAGGATTCACATCATATCAAAGGAAGCATTGAAAGCACACGAAAGAAATCTGATCCTCTTCATTTTGAACGCTTGGATTTGTCTACAGCTTCCAAGGATGTAGGAAAGCGATCTATTTGGAGGATGGATGGGAAGATTACCTTGGTTCTTATATCCACCACACTTGCATGTGTTTTTGCTGCATTACAACTCTTCCATGTAAAAAGAAATCCTGAAGTCATTCCCTCTATTTCCATCTTAATGCATCTAATGCTAACCCTTGGCTACATGATACCTCTGGGGATAAATTTTCGAGCCATGTTCACGCATGATATAAACAGCCAAAATGTGTACCTTGGAGGCGGTGGATGGCTTGAATATAATGAGATAATCATAAGAATAACAACATTGGTAGCTTTCTTGATACAATTCCACCTTCTGAAGCTAACTTGGTCAGCAAAATCAGGAAATAGAACCCGAAAGGATCTCCAGGTCATGGAAAAGAAGGCTCTGTTTGTGGCTTTACGAGTGTATGCCATAGGGGCTTTAGCAGCTTTGTTTCTGCATACGCAGAACCTGAGGAAGAGGGACAATGGCAATGTGTTGCATTATATAGAGTATTCCATCTTGGATGCCTTGATATCTTATGGTGGTCTGGTCTTGGGTGGTTTTTTGTTCCCTCAAATTCTGCTCAACATGTTCTGCAAATCAAGAGAAAATGCTCTATCAGTCTGGTTCTACTTTGGAACAACTTTTGTTCAAGCGCTGCCACATGCATATGACCTTTTCAGGGCTCACAGCTATGCTGGTGACCATTTGGACAAGTACTCTCACATTGATCCAAGTCGTGCGGCAGATTATTTTCACTCCACAGCTTGGAATGCCACTGCAAGCAGCGGAAGTCTACTGTTTGCTGGTATCATTTACTTACAGCAGCAGTTTGGGGGTCGTTGCATTGCTCCTCGAAAGTTGCAAGAGTTGGGTGCATATGAGAAGGTCCCTACAGTTCATGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

909

Amino Acids

101.72

Weight (kDa)

6.88

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 39 - 204 2.8e-18 DUF2921 lipocalin-like domain
DUF2921_N PF25333 306 - 394 9.5e-27 DUF2921 lipocalin-like domain
DUF2921_N PF25333 427 - 603 2.5e-33 DUF2921 lipocalin-like domain
DUF2921 PF11145 613 - 893 2.6e-55 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 2206, 2586
AccI GTMKAC 4 cut(s) 906, 1247, 1814, 2614
AciI CCGC 4 cut(s) 1642, 2073, 2561, 2607
AclWI GGATC 6 cut(s) 469, 581, 1607, 1778, 2202, 2543
AcoI YGGCCR 1 cut(s) 914
AcsI RAATTY 8 cut(s) 108, 265, 523, 899, 1030, 1363, 2017, 2394
AcuI CTGAAG 6 cut(s) 81, 117, 1389, 1614, 1965, 2171
AfeI AGCGCT 1 cut(s) 2475
AfiI CCNNNNNNNGG 7 cut(s) 286, 1094, 1553, 1630, 2206, 2500, 2586
AflII CTTAAG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 2406
AhlI ACTAGT 1 cut(s) 530
AjnI CCWGG 2 cut(s) 394, 2199
AjuI GAANNNNNNNTTGG 4 cut(s) 1362, 1394, 1856, 1888
Alw21I GWGCWC 2 cut(s) 1142, 1280
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 6 cut(s) 469, 581, 1607, 1778, 2202, 2543
AlwNI CAGNNNCTG 1 cut(s) 2287
Ama87I CYCGRG 1 cut(s) 1279
Aor51HI AGCGCT 1 cut(s) 2475
AoxI GGCC 3 cut(s) 830, 914, 1305
ApeKI GCWGC 9 cut(s) 367, 1116, 1292, 1497, 1910, 2261, 2476, 2604, 2644
ApoI RAATTY 8 cut(s) 108, 265, 523, 899, 1030, 1363, 2017, 2394
Asp700I GAANNNNTTC 2 cut(s) 38, 1950
AspLEI GCGC 1 cut(s) 2476
AspS9I GGNCC 2 cut(s) 602, 2707
AsuHPI GGTGA 4 cut(s) 895, 974, 1067, 2531
AvaI CYCGRG 1 cut(s) 1279
AvaII GGWCC 2 cut(s) 602, 2707
AxyI CCTNAGG 1 cut(s) 2288
BalI TGGCCA 1 cut(s) 916
BanII GRGCYC 1 cut(s) 2506
BarI GAAGNNNNNNTAC 2 cut(s) 679, 711
Bbv12I GWGCWC 2 cut(s) 1142, 1280
BbvI GCAGC 9 cut(s) 379, 1128, 1279, 1509, 1897, 2273, 2463, 2616, 2656
BccI CCATC 6 cut(s) 1539, 1849, 1853, 1973, 2073, 2342
BciT130I CCWGG 2 cut(s) 396, 2201
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 658
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 2 cut(s) 531, 945
BfmI CTRYAG 4 cut(s) 1201, 1492, 1815, 2712
BfoI RGCGCY 1 cut(s) 2477
BfrI CTTAAG 1 cut(s) 503
BglI GCCNNNNNGGC 2 cut(s) 922, 2252
BmcAI AGTACT 1 cut(s) 2537
Bme1390I CCNGG 2 cut(s) 396, 2201
Bme18I GGWCC 2 cut(s) 602, 2707
BmeT110I CYCGRG 1 cut(s) 1279
BmgT120I GGNCC 2 cut(s) 602, 2707
BmiI GGNNCC 5 cut(s) 400, 556, 603, 1470, 2709
BmrFI CCNGG 2 cut(s) 396, 2201
BmsI GCATC 5 cut(s) 934, 967, 1628, 1984, 2332
BplI GAGNNNNNCTC 2 cut(s) 1262, 1294
BpmI CTGGAG 1 cut(s) 2183
BpuEI CTTGAG 2 cut(s) 359, 1099
BsaBI GATNNNNATC 2 cut(s) 466, 1740
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 6 cut(s) 833, 929, 1824, 1872, 1990, 2065
BsaXI ACNNNNNCTCC 2 cut(s) 1484, 1514
Bsc4I CCNNNNNNNGG 7 cut(s) 286, 1094, 1553, 1630, 2206, 2500, 2586
Bse1I ACTGG 3 cut(s) 217, 380, 1188
Bse21I CCTNAGG 1 cut(s) 2288
Bse3DI GCAATG 4 cut(s) 1002, 1396, 2314, 2664
Bse8I GATNNNNATC 2 cut(s) 466, 1740
BseBI CCWGG 2 cut(s) 396, 2201
BseDI CCNNGG 6 cut(s) 833, 929, 1824, 1872, 1990, 2065
BseGI GGATG 9 cut(s) 467, 925, 982, 1643, 1834, 1860, 1864, 2084, 2347
BseJI GATNNNNATC 2 cut(s) 466, 1740
BseLI CCNNNNNNNGG 7 cut(s) 286, 1094, 1553, 1630, 2206, 2500, 2586
BseMI GCAATG 4 cut(s) 1002, 1396, 2314, 2664
BseMII CTCAG 4 cut(s) 135, 492, 570, 2279
BseNI ACTGG 3 cut(s) 217, 380, 1188
BseRI GAGGAG 2 cut(s) 1461, 2661
BseXI GCAGC 9 cut(s) 379, 1128, 1279, 1509, 1897, 2273, 2463, 2616, 2656
BseYI CCCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 790
BshFI GGCC 3 cut(s) 832, 916, 1307
BsiHKAI GWGCWC 2 cut(s) 1142, 1280
BsiHKCI CYCGRG 1 cut(s) 1279
BslFI GGGAC 5 cut(s) 302, 615, 1111, 2312, 2693
BslI CCNNNNNNNGG 7 cut(s) 286, 1094, 1553, 1630, 2206, 2500, 2586
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 5 cut(s) 302, 615, 1111, 2312, 2693
BsmI GAATGC 1 cut(s) 2596
BsnI GGCC 3 cut(s) 832, 916, 1307
Bso31I GGTCTC 1 cut(s) 658
BsoBI CYCGRG 1 cut(s) 1279
Bsp1286I GDGCHC 3 cut(s) 1142, 1280, 2506
Bsp1407I TGTACA 2 cut(s) 307, 510
BspACI CCGC 4 cut(s) 1642, 2073, 2561, 2607
BspANI GGCC 3 cut(s) 832, 916, 1307
BspCNI CTCAG 4 cut(s) 136, 491, 571, 2280
BspHI TCATGA 5 cut(s) 30, 519, 570, 757, 2719
BspLI GGNNCC 5 cut(s) 400, 556, 603, 1470, 2709
BspPI GGATC 6 cut(s) 469, 581, 1607, 1778, 2202, 2543
BspQI GCTCTTC 1 cut(s) 941
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 658
BsrDI GCAATG 4 cut(s) 1002, 1396, 2314, 2664
BsrGI TGTACA 2 cut(s) 307, 510
BsrI ACTGG 3 cut(s) 217, 380, 1188
BssECI CCNNGG 6 cut(s) 833, 929, 1824, 1872, 1990, 2065
BssNAI GTATAC 1 cut(s) 1248
BssT1I CCWWGG 6 cut(s) 833, 929, 1824, 1872, 1990, 2065
Bst1107I GTATAC 1 cut(s) 1248
Bst2UI CCWGG 2 cut(s) 396, 2201
Bst4CI ACNGT 9 cut(s) 674, 788, 1150, 1202, 1444, 1563, 1661, 2619, 2716
Bst6I CTCTTC 5 cut(s) 941, 1794, 1928, 2288, 2718
BstAFI CTTAAG 1 cut(s) 503
BstAPI GCANNNNNTGC 2 cut(s) 376, 1981
BstAUI TGTACA 2 cut(s) 307, 510
BstC8I GCNNGC 6 cut(s) 377, 1309, 1335, 1356, 1668, 2602
BstDEI CTNAG 5 cut(s) 144, 478, 579, 1475, 2288
BstEII GGTNACC 1 cut(s) 2519
BstENI CCTNNNNNAGG 1 cut(s) 1092
BstF5I GGATG 9 cut(s) 467, 925, 982, 1643, 1834, 1860, 1864, 2084, 2347
BstH2I RGCGCY 1 cut(s) 2477
BstHHI GCGC 1 cut(s) 2476
BstMAI GTCTC 1 cut(s) 658
BstNI CCWGG 2 cut(s) 396, 2201
BstNSI RCATGY 6 cut(s) 569, 1337, 1358, 1902, 2410, 2486
BstPI GGTNACC 1 cut(s) 2519
BstSCI CCNGG 2 cut(s) 394, 2199
BstSFI CTRYAG 4 cut(s) 1201, 1492, 1815, 2712
BstV1I GCAGC 9 cut(s) 379, 1128, 1279, 1509, 1897, 2273, 2463, 2616, 2656
BstX2I RGATCY 2 cut(s) 1599, 2194
BstXI CCANNNNNNTGG 1 cut(s) 598
BstYI RGATCY 2 cut(s) 1599, 2194
BstZ17I GTATAC 1 cut(s) 1248
Bsu36I CCTNAGG 1 cut(s) 2288
BsuRI GGCC 3 cut(s) 832, 916, 1307
BtsCI GGATG 9 cut(s) 467, 925, 982, 1643, 1834, 1860, 1864, 2084, 2347
BtsI GCAGTG 2 cut(s) 229, 2595
BtsIMutI CAGTG 6 cut(s) 210, 229, 750, 784, 1195, 2595
Cac8I GCNNGC 6 cut(s) 377, 1309, 1335, 1356, 1668, 2602
CaiI CAGNNNCTG 1 cut(s) 2287
CciI TCATGA 5 cut(s) 30, 519, 570, 757, 2719
CfoI GCGC 1 cut(s) 2476
Cfr13I GGNCC 2 cut(s) 602, 2707
CspCI CAANNNNNGTGG 2 cut(s) 1876, 1911
DdeI CTNAG 5 cut(s) 144, 478, 579, 1475, 2288
EaeI YGGCCR 1 cut(s) 914
Eam1104I CTCTTC 5 cut(s) 941, 1794, 1928, 2288, 2718
EarI CTCTTC 5 cut(s) 941, 1794, 1928, 2288, 2718
Eco130I CCWWGG 6 cut(s) 833, 929, 1824, 1872, 1990, 2065
Eco24I GRGCYC 1 cut(s) 2506
Eco31I GGTCTC 1 cut(s) 658
Eco32I GATATC 1 cut(s) 2352
Eco47I GGWCC 2 cut(s) 602, 2707
Eco47III AGCGCT 1 cut(s) 2475
Eco57I CTGAAG 6 cut(s) 81, 117, 1389, 1614, 1965, 2171
Eco81I CCTNAGG 1 cut(s) 2288
Eco88I CYCGRG 1 cut(s) 1279
Eco91I GGTNACC 1 cut(s) 2519
EcoNI CCTNNNNNAGG 1 cut(s) 1092
EcoO109I RGGNCCY 1 cut(s) 2707
EcoO65I GGTNACC 1 cut(s) 2519
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 394, 2199
EcoRV GATATC 1 cut(s) 2352
EcoT14I CCWWGG 6 cut(s) 833, 929, 1824, 1872, 1990, 2065
EcoT22I ATGCAT 3 cut(s) 1356, 1977, 2488
EcoT38I GRGCYC 1 cut(s) 2506
ErhI CCWWGG 6 cut(s) 833, 929, 1824, 1872, 1990, 2065
FalI AAGNNNNNCTT 6 cut(s) 321, 353, 477, 509, 1856, 1888
FaqI GGGAC 5 cut(s) 302, 615, 1111, 2312, 2693
FauNDI CATATG 2 cut(s) 2488, 2698
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 4 cut(s) 906, 1247, 1814, 2614
FokI GGATG 9 cut(s) 454, 912, 989, 1650, 1841, 1867, 1871, 2091, 2354
FriOI GRGCYC 1 cut(s) 2506
FspBI CTAG 2 cut(s) 531, 945
GlaI GCGC 1 cut(s) 2475
GsaI CCCAGC 1 cut(s) 289
GsuI CTGGAG 1 cut(s) 2183
HaeII RGCGCY 1 cut(s) 2477
HaeIII GGCC 3 cut(s) 832, 916, 1307
HhaI GCGC 1 cut(s) 2476
Hin6I GCGC 1 cut(s) 2474
HinP1I GCGC 1 cut(s) 2474
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 2 cut(s) 35, 446
HinfI GANTC 9 cut(s) 146, 190, 423, 434, 988, 1014, 1679, 1696, 1736
HphI GGTGA 4 cut(s) 895, 974, 1067, 2531
Hpy188I TCNGA 8 cut(s) 189, 433, 461, 826, 868, 1369, 1783, 2151
HpyCH4III ACNGT 9 cut(s) 674, 788, 1150, 1202, 1444, 1563, 1661, 2619, 2716
HpyF3I CTNAG 5 cut(s) 144, 478, 579, 1475, 2288
HspAI GCGC 1 cut(s) 2474
Ksp22I TGATCA 1 cut(s) 253
LguI GCTCTTC 1 cut(s) 941
LmnI GCTCC 4 cut(s) 1137, 1474, 1505, 2674
Lsp1109I GCAGC 9 cut(s) 379, 1128, 1279, 1509, 1897, 2273, 2463, 2616, 2656
LweI GCATC 5 cut(s) 934, 967, 1628, 1984, 2332
MaeI CTAG 2 cut(s) 531, 945
MaeIII GTNAC 9 cut(s) 200, 224, 349, 535, 790, 1150, 1264, 1478, 2519
MboII GAAGA 9 cut(s) 19, 429, 704, 928, 997, 1781, 1876, 1915, 2305
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 2 cut(s) 1599, 2194
MhlI GDGCHC 3 cut(s) 1142, 1280, 2506
MlsI TGGCCA 1 cut(s) 916
MluNI TGGCCA 1 cut(s) 916
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 439
Mox20I TGGCCA 1 cut(s) 916
Mph1103I ATGCAT 3 cut(s) 1356, 1977, 2488
MroXI GAANNNNTTC 2 cut(s) 38, 1950
MscI TGGCCA 1 cut(s) 916
MseI TTAA 3 cut(s) 234, 504, 1970
MslI CAYNNNNRTG 5 cut(s) 360, 1897, 1970, 2487, 2511
Msp20I TGGCCA 1 cut(s) 916
MspA1I CMGCKG 3 cut(s) 101, 1229, 2607
MspCI CTTAAG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 396, 2201
MunI CAATTG 1 cut(s) 1101
Mva1269I GAATGC 1 cut(s) 2596
MvaI CCWGG 2 cut(s) 396, 2201
NdeI CATATG 2 cut(s) 2488, 2698
NlaIV GGNNCC 5 cut(s) 400, 556, 603, 1470, 2709
NmuCI GTSAC 4 cut(s) 224, 1150, 1478, 2519
NsiI ATGCAT 3 cut(s) 1356, 1977, 2488
NspI RCATGY 6 cut(s) 569, 1337, 1358, 1902, 2410, 2486
PaeI GCATGC 2 cut(s) 1337, 1358
PaeR7I CTCGAG 1 cut(s) 1279
PagI TCATGA 5 cut(s) 30, 519, 570, 757, 2719
PciI ACATGT 1 cut(s) 2406
PciSI GCTCTTC 1 cut(s) 941
PctI GAATGC 1 cut(s) 2596
PdmI GAANNNNTTC 2 cut(s) 38, 1950
PfeI GAWTC 8 cut(s) 190, 423, 434, 988, 1014, 1679, 1696, 1736
PflMI CCANNNNNTGG 2 cut(s) 2206, 2586
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 2707
PscI ACATGT 1 cut(s) 2406
Psp5II RGGWCCY 1 cut(s) 2707
Psp6I CCWGG 2 cut(s) 394, 2199
PspEI GGTNACC 1 cut(s) 2519
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 2 cut(s) 394, 2199
PspN4I GGNNCC 5 cut(s) 400, 556, 603, 1470, 2709
PspPI GGNCC 2 cut(s) 602, 2707
PspPPI RGGWCCY 1 cut(s) 2707
PsrI GAACNNNNNNTAC 2 cut(s) 626, 658
PstNI CAGNNNCTG 1 cut(s) 2287
PsuI RGATCY 2 cut(s) 1599, 2194
PvuII CAGCTG 2 cut(s) 101, 1229
RseI CAYNNNNRTG 5 cut(s) 360, 1897, 1970, 2487, 2511
SapI GCTCTTC 1 cut(s) 941
SaqAI TTAA 3 cut(s) 234, 504, 1970
Sau96I GGNCC 2 cut(s) 602, 2707
ScaI AGTACT 1 cut(s) 2537
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 396, 2201
SduI GDGCHC 3 cut(s) 1142, 1280, 2506
SfaNI GCATC 5 cut(s) 934, 967, 1628, 1984, 2332
SfcI CTRYAG 4 cut(s) 1201, 1492, 1815, 2712
Sfr274I CTCGAG 1 cut(s) 1279
SinI GGWCC 2 cut(s) 602, 2707
SlaI CTCGAG 1 cut(s) 1279
SmiMI CAYNNNNRTG 5 cut(s) 360, 1897, 1970, 2487, 2511
SmlI CTYRAG 4 cut(s) 338, 503, 1078, 1279
SmoI CTYRAG 4 cut(s) 338, 503, 1078, 1279
SpeI ACTAGT 1 cut(s) 530
SphI GCATGC 2 cut(s) 1337, 1358
SsiI CCGC 4 cut(s) 1642, 2073, 2561, 2607
SspI AATATT 2 cut(s) 776, 1510
SspMI CTAG 2 cut(s) 531, 945
StyD4I CCNGG 2 cut(s) 394, 2199
StyI CCWWGG 6 cut(s) 833, 929, 1824, 1872, 1990, 2065
TaaI ACNGT 9 cut(s) 674, 788, 1150, 1202, 1444, 1563, 1661, 2619, 2716
TaqI TCGA 6 cut(s) 80, 561, 1012, 1280, 2023, 2674
TaqII GACCGA 1 cut(s) 1445
TatI WGTACW 5 cut(s) 307, 510, 642, 947, 2535
TauI GCSGC 2 cut(s) 1644, 2564
TfiI GAWTC 8 cut(s) 190, 423, 434, 988, 1014, 1679, 1696, 1736
Tru1I TTAA 3 cut(s) 234, 504, 1970
Tru9I TTAA 3 cut(s) 234, 504, 1970
TscAI CASTG 6 cut(s) 217, 229, 750, 791, 1195, 2602
TseFI GTSAC 4 cut(s) 224, 1150, 1478, 2519
TseI GCWGC 9 cut(s) 367, 1116, 1292, 1497, 1910, 2261, 2476, 2604, 2644
Tsp45I GTSAC 4 cut(s) 224, 1150, 1478, 2519
TspDTI ATGAA 9 cut(s) 19, 31, 47, 536, 647, 1038, 1336, 1781, 2708
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 6 cut(s) 217, 229, 750, 791, 1195, 2602
Van91I CCANNNNNTGG 2 cut(s) 2206, 2586
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 602, 2707
XagI CCTNNNNNAGG 1 cut(s) 1092
XapI RAATTY 8 cut(s) 108, 265, 523, 899, 1030, 1363, 2017, 2394
XceI RCATGY 6 cut(s) 569, 1337, 1358, 1902, 2410, 2486
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XhoI CTCGAG 1 cut(s) 1279
XmiI GTMKAC 4 cut(s) 906, 1247, 1814, 2614
XmnI GAANNNNTTC 2 cut(s) 38, 1950
XspI CTAG 2 cut(s) 531, 945
ZrmI AGTACT 1 cut(s) 2537
Zsp2I ATGCAT 3 cut(s) 1356, 1977, 2488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.