FvH4_1g10760

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000420
Physical Location & Seq
Reverse (-)
5875622 .. 5876119
498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10760.t1

Sequence Viewer

Length: 498 bp
ATGATTGGGAAGAGTAGGTCCATGTATAATGCAGGTAACTTCGAGCCTAGTGTTGTTCTTAAGCTTAATTATCCGAAATGGTCTAGTATTTATGACAGTTTGATTAGTGGGAGCTTAGAGAGTGTTGTTAGTGATAAGGATGATGGTGAGAATTATTTTGATGCTATTATGGTGTTGGCTTTTTCTGTGAAGCATAGTTATGGGTATACATTTGTTGGGGAAGATAGGATGAGTAGTTTTCCGAGTAGTGTTGAGAGTATAGGTTTGAGTAATTTGAATGATTCGAACGGTGGTTTGTGTAGGTTGCTTGGTAACCGTCTCGAGAGATTTGAATTGGTGTATGGGAGTGAGTGTGGTGGGGGTGTGAATTGCAATCCTCTTGGTGGGGATGTTGGATATGTACCGAGCTCGTTGGTTTTTTATGCGACTCGGTGTACAGAAGAGAGGAAAATGCAGATGCTGTTGGGGTTTTCAACTCTAGTGGAGATGAATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

166

Amino Acids

18.09

Weight (kDa)

4.75

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 206
AfaI GTAC 2 cut(s) 402, 436
AfiI CCNNNNNNNGG 1 cut(s) 383
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 3 cut(s) 277, 332, 474
AluBI AGCT 3 cut(s) 64, 114, 408
AluI AGCT 3 cut(s) 64, 114, 408
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 410
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 3 cut(s) 48, 84, 479
BfrI CTTAAG 1 cut(s) 59
BfuAI ACCTGC 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 18
BmsI GCATC 2 cut(s) 151, 447
Bpu14I TTCGAA 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 383
BseGI GGATG 3 cut(s) 145, 234, 394
BseLI CCNNNNNNNGG 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 410
BsiHKCI CYCGRG 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 323
BsmBI CGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 410
Bsp1407I TGTACA 1 cut(s) 434
BspMI ACCTGC 1 cut(s) 23
BspT104I TTCGAA 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 434
BssNAI GTATAC 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 98, 290, 317
Bst6I CTCTTC 2 cut(s) 5, 435
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 115
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 3 cut(s) 145, 234, 394
BstMAI GTCTC 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 311
BstZ17I GTATAC 1 cut(s) 207
BtsCI GGATG 3 cut(s) 145, 234, 394
BveI ACCTGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 2 cut(s) 401, 435
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 1 cut(s) 22
CviJI RGCY 5 cut(s) 46, 64, 114, 179, 408
CviKI_1 RGCY 5 cut(s) 46, 64, 114, 179, 408
CviQI GTAC 2 cut(s) 401, 435
DdeI CTNAG 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 5, 435
EarI CTCTTC 2 cut(s) 5, 435
Ecl136II GAGCTC 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 408
EcoO65I GGTNACC 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 1 cut(s) 25
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 206
FokI GGATG 3 cut(s) 152, 241, 401
FriOI GRGCYC 1 cut(s) 410
FspBI CTAG 3 cut(s) 48, 84, 479
Hin1II CATG 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 281, 427
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 207, 435
Hpy188I TCNGA 2 cut(s) 75, 243
Hpy188III TCNNGA 2 cut(s) 320, 322
Hpy8I GTNNAC 2 cut(s) 207, 435
HpyCH4III ACNGT 3 cut(s) 98, 290, 317
HpyCH4V TGCA 3 cut(s) 32, 372, 454
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 1 cut(s) 18
LweI GCATC 2 cut(s) 151, 447
MaeI CTAG 3 cut(s) 48, 84, 479
MaeIII GTNAC 2 cut(s) 35, 311
MboII GAAGA 3 cut(s) 22, 233, 452
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 5 cut(s) 67, 151, 271, 332, 367
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 2 cut(s) 387, 438
MseI TTAA 2 cut(s) 60, 66
MslI CAYNNNNRTG 1 cut(s) 198
MspCI CTTAAG 1 cut(s) 59
NlaIII CATG 1 cut(s) 25
NspV TTCGAA 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 320
PfeI GAWTC 1 cut(s) 281
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp124BI GAGCTC 1 cut(s) 410
PspEI GGTNACC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 460
RsaI GTAC 2 cut(s) 402, 436
RsaNI GTAC 2 cut(s) 401, 435
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 410
SaqAI TTAA 2 cut(s) 60, 66
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 421
SduI GDGCHC 1 cut(s) 410
SetI ASST 7 cut(s) 20, 37, 66, 116, 265, 305, 410
SfaNI GCATC 2 cut(s) 151, 447
Sfr274I CTCGAG 1 cut(s) 320
SfuI TTCGAA 1 cut(s) 284
SinI GGWCC 1 cut(s) 18
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 59, 320
SmoI CTYRAG 2 cut(s) 59, 320
Sse9I AATT 5 cut(s) 67, 151, 271, 332, 367
SspMI CTAG 3 cut(s) 48, 84, 479
SstI GAGCTC 1 cut(s) 410
TaaI ACNGT 3 cut(s) 98, 290, 317
TaqI TCGA 3 cut(s) 42, 284, 321
TasI AATT 5 cut(s) 67, 151, 271, 332, 367
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 60, 66
Tru9I TTAA 2 cut(s) 60, 66
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 3 cut(s) 48, 84, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.