pycom03g17470

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000420
Physical Location & Seq
Reverse (-)
18603594 .. 18604847
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17470.4

Sequence Viewer

Length: 993 bp
ATGAAAACCGAGTCATCAGCTAAAACACCAGTCTTCTGCTACCGTATCTTTGAAGATGTGGTACTCATTGCCAAAACTTCTCATGTTCTTCTCTGTTTTTGCCGTATTTTCTTTGCCCTCCGTTCCATCGTCTTTCCACCACATTCTAATTACTTCTATAATCCAGTTTCATTGCCTTCTCCACCTTACGATCACATATCTTATTCTGATCATTGTGATTCAAATGTTCCCCGGGCAACGCCAAGTGGATATGTAGGTTCTCAGATTCTCAAGAGCCATACAGGTTACTACACCGGTGGAAGTGGAATTCTTAGTCAAAGATCATCATTTCAGCCTTATCACGAGCCCGAAAATTCAATTGAGTTCACCCCCTCGAGTGTTCAAACAACTTATGTACCAGGCTTGTTCATGATTGAAGGAAGTCTTCGATTTCAAAGAAGCAGTGTGTTTGACTATGTGGGAAATGTCTCAAAAAGTCTTCGACCTAGTTCGGTAAGCTTTGAACTAAGTGGGTTCTGGTCAGAATCTTCTGGGAAGATTTGCATGGTTGGATCAGGTTCTAATTACTTGGCACATGGTCGTGGGCTTTATTATCCCGCTGTTCTTAAGCTTTATAATGTCATGAGTTCCACCAGTCAATCCAAAGTATTTTGGACCCGTCTCAATTTGATGATTCCTCGTATAAATTACGAGTACTCTTTGGTGTCAAATAAATCTGGTAACTGTTGTTCTGGTGGAAGAAATATTCACCCAATTTCTTTGCCAATAGCGAAAATCAAATATTCTAGCCATTGCCTTTCTGCAAAGAACTGCACTCCATTTGCTGGTTCTGATTTGCCTCGCATTTTGTCGTTGAAGGCTATTGAGTGTTCGGAGAACACACAACTTACGAGAGTTCAAGTGGAATTTGGAGACATTAGCAATCCCTGGTATCGGAGGCCCTTTAATCCCAATACAGTTGAATATCAGAGTATGCAACGAACAATCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

331

Amino Acids

36.96

Weight (kDa)

9.08

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
AccB7I CCANNNNNTGG 1 cut(s) 824
AciI CCGC 1 cut(s) 597
AclWI GGATC 1 cut(s) 559
AcsI RAATTY 3 cut(s) 306, 352, 905
AfaI GTAC 3 cut(s) 63, 396, 695
AfiI CCNNNNNNNGG 2 cut(s) 824, 933
AflII CTTAAG 1 cut(s) 605
AgeI ACCGGT 1 cut(s) 293
AjnI CCWGG 2 cut(s) 397, 926
AluBI AGCT 4 cut(s) 20, 498, 610, 990
AluI AGCT 4 cut(s) 20, 498, 610, 990
Alw26I GTCTC 3 cut(s) 472, 665, 906
AlwI GGATC 1 cut(s) 559
Ama87I CYCGRG 2 cut(s) 231, 373
AoxI GGCC 1 cut(s) 938
ApoI RAATTY 3 cut(s) 306, 352, 905
AsiGI ACCGGT 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 654, 939
AsuC2I CCSGG 2 cut(s) 232, 233
AsuHPI GGTGA 2 cut(s) 358, 740
AvaI CYCGRG 2 cut(s) 231, 373
AvaII GGWCC 1 cut(s) 654
BaeI ACNNNNGTAYC 2 cut(s) 378, 411
BanII GRGCYC 1 cut(s) 348
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 3 cut(s) 25, 416, 470
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 87
BciT130I CCWGG 2 cut(s) 399, 928
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 2 cut(s) 232, 233
BcoDI GTCTC 3 cut(s) 472, 665, 906
BfaI CTAG 3 cut(s) 486, 786, 991
BfrI CTTAAG 1 cut(s) 605
BmcAI AGTACT 1 cut(s) 695
Bme1390I CCNGG 4 cut(s) 232, 233, 399, 928
Bme18I GGWCC 1 cut(s) 654
BmeT110I CYCGRG 2 cut(s) 231, 373
BmgT120I GGNCC 2 cut(s) 654, 939
BmiI GGNNCC 1 cut(s) 656
BmrFI CCNGG 4 cut(s) 232, 233, 399, 928
BpiI GAAGAC 3 cut(s) 25, 416, 470
BpuEI CTTGAG 1 cut(s) 254
BpuMI CCSGG 2 cut(s) 232, 233
BsaJI CCNNGG 3 cut(s) 230, 231, 926
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 2 cut(s) 824, 933
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 3 cut(s) 29, 164, 633
Bse3DI GCAATG 3 cut(s) 66, 170, 790
BseBI CCWGG 2 cut(s) 399, 928
BseDI CCNNGG 3 cut(s) 230, 231, 926
BseLI CCNNNNNNNGG 2 cut(s) 824, 933
BseMI GCAATG 3 cut(s) 66, 170, 790
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 3 cut(s) 29, 164, 633
BsgI GTGCAG 1 cut(s) 796
BshFI GGCC 1 cut(s) 940
BshTI ACCGGT 1 cut(s) 293
BsiHKCI CYCGRG 2 cut(s) 231, 373
BsiSI CCGG 2 cut(s) 232, 294
BslI CCNNNNNNNGG 2 cut(s) 824, 933
BsmAI GTCTC 3 cut(s) 472, 665, 906
BsmBI CGTCTC 1 cut(s) 665
BsnI GGCC 1 cut(s) 940
BsoBI CYCGRG 2 cut(s) 231, 373
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 190, 208, 320, 551
BspACI CCGC 1 cut(s) 597
BspANI GGCC 1 cut(s) 940
BspCNI CTCAG 1 cut(s) 274
BspHI TCATGA 2 cut(s) 408, 621
BspLI GGNNCC 1 cut(s) 656
BspPI GGATC 1 cut(s) 559
BspTI CTTAAG 1 cut(s) 605
BsrDI GCAATG 3 cut(s) 66, 170, 790
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 3 cut(s) 29, 164, 633
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 230, 231, 926
BssMI GATC 4 cut(s) 190, 208, 320, 551
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 2 cut(s) 399, 928
Bst4CI ACNGT 3 cut(s) 44, 725, 958
BstAFI CTTAAG 1 cut(s) 605
BstDEI CTNAG 3 cut(s) 261, 311, 506
BstKTI GATC 4 cut(s) 193, 211, 323, 554
BstMAI GTCTC 3 cut(s) 472, 665, 906
BstMBI GATC 4 cut(s) 190, 208, 320, 551
BstNI CCWGG 2 cut(s) 399, 928
BstSCI CCNGG 4 cut(s) 230, 231, 397, 926
BstV2I GAAGAC 3 cut(s) 25, 416, 470
BsuRI GGCC 1 cut(s) 940
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 448
CciI TCATGA 2 cut(s) 408, 621
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 654, 939
Cfr9I CCCGGG 1 cut(s) 231
Csp6I GTAC 3 cut(s) 62, 395, 694
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 5 cut(s) 83, 409, 544, 575, 622
CviQI GTAC 3 cut(s) 62, 395, 694
DdeI CTNAG 3 cut(s) 261, 311, 506
DpnI GATC 4 cut(s) 192, 210, 322, 553
DpnII GATC 4 cut(s) 190, 208, 320, 551
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 654
Eco88I CYCGRG 2 cut(s) 231, 373
EcoO109I RGGNCCY 1 cut(s) 939
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 397, 926
EcoT38I GRGCYC 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 5 cut(s) 86, 412, 547, 578, 625
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 5 cut(s) 82, 408, 543, 574, 621
FauI CCCGC 1 cut(s) 604
FbaI TGATCA 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 348
FspBI CTAG 3 cut(s) 486, 786, 991
HaeIII GGCC 1 cut(s) 940
HapII CCGG 2 cut(s) 232, 294
Hin1II CATG 5 cut(s) 86, 412, 547, 578, 625
HindIII AAGCTT 2 cut(s) 496, 608
HinfI GANTC 5 cut(s) 11, 218, 265, 524, 673
HpaII CCGG 2 cut(s) 232, 294
HphI GGTGA 2 cut(s) 358, 740
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 7 cut(s) 208, 264, 523, 832, 874, 936, 969
Hpy188III TCNNGA 4 cut(s) 271, 341, 409, 622
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 3 cut(s) 186, 410, 850
HpyCH4III ACNGT 3 cut(s) 44, 725, 958
HpyCH4V TGCA 4 cut(s) 543, 803, 813, 976
HpyF3I CTNAG 3 cut(s) 261, 311, 506
Hsp92II CATG 5 cut(s) 86, 412, 547, 578, 625
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 190, 208, 320, 551
MaeI CTAG 3 cut(s) 486, 786, 991
MaeIII GTNAC 2 cut(s) 284, 719
MalI GATC 4 cut(s) 192, 210, 322, 553
MboI GATC 4 cut(s) 190, 208, 320, 551
MboII GAAGA 8 cut(s) 25, 65, 80, 416, 470, 519, 547, 750
MfeI CAATTG 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 9 cut(s) 148, 306, 352, 357, 562, 664, 685, 753, 905
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 5 cut(s) 128, 382, 687, 849, 930
MseI TTAA 2 cut(s) 606, 945
MslI CAYNNNNRTG 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 599
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 2 cut(s) 232, 294
MspR9I CCNGG 4 cut(s) 232, 233, 399, 928
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 2 cut(s) 399, 928
NciI CCSGG 2 cut(s) 232, 233
NdeII GATC 4 cut(s) 190, 208, 320, 551
NlaIII CATG 5 cut(s) 86, 412, 547, 578, 625
NlaIV GGNNCC 1 cut(s) 656
PaeR7I CTCGAG 1 cut(s) 373
PagI TCATGA 2 cut(s) 408, 621
PfeI GAWTC 4 cut(s) 218, 265, 524, 673
PflMI CCANNNNNTGG 1 cut(s) 824
PinAI ACCGGT 1 cut(s) 293
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PsiI TTATAA 1 cut(s) 615
Psp6I CCWGG 2 cut(s) 397, 926
PspGI CCWGG 2 cut(s) 397, 926
PspN4I GGNNCC 1 cut(s) 656
PspPI GGNCC 2 cut(s) 654, 939
PspXI VCTCGAGB 1 cut(s) 373
PsrI GAACNNNNNNTAC 2 cut(s) 712, 744
RsaI GTAC 3 cut(s) 63, 396, 695
RsaNI GTAC 3 cut(s) 62, 395, 694
RseI CAYNNNNRTG 1 cut(s) 579
SaqAI TTAA 2 cut(s) 606, 945
Sau3AI GATC 4 cut(s) 190, 208, 320, 551
Sau96I GGNCC 2 cut(s) 654, 939
ScaI AGTACT 1 cut(s) 695
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 4 cut(s) 232, 233, 399, 928
SduI GDGCHC 1 cut(s) 348
SetI ASST 9 cut(s) 22, 187, 259, 286, 487, 500, 559, 612, 992
Sfr274I CTCGAG 1 cut(s) 373
SgrAI CRCCGGYG 1 cut(s) 293
SinI GGWCC 1 cut(s) 654
SlaI CTCGAG 1 cut(s) 373
SmaI CCCGGG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 3 cut(s) 269, 373, 605
SmoI CTYRAG 3 cut(s) 269, 373, 605
Sse9I AATT 9 cut(s) 148, 306, 352, 357, 562, 664, 685, 753, 905
SsiI CCGC 1 cut(s) 597
SspI AATATT 2 cut(s) 745, 782
SspMI CTAG 3 cut(s) 486, 786, 991
StyD4I CCNGG 4 cut(s) 230, 231, 397, 926
TaaI ACNGT 3 cut(s) 44, 725, 958
TaqI TCGA 3 cut(s) 374, 427, 481
TasI AATT 9 cut(s) 148, 306, 352, 357, 562, 664, 685, 753, 905
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 4 cut(s) 218, 265, 524, 673
Tru1I TTAA 2 cut(s) 606, 945
Tru9I TTAA 2 cut(s) 606, 945
TscAI CASTG 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 17, 159, 397
TspGWI ACGGA 1 cut(s) 110
TspMI CCCGGG 1 cut(s) 231
TspRI CASTG 1 cut(s) 448
Van91I CCANNNNNTGG 1 cut(s) 824
Vha464I CTTAAG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 654
XapI RAATTY 3 cut(s) 306, 352, 905
XhoI CTCGAG 1 cut(s) 373
XmaI CCCGGG 1 cut(s) 231
XspI CTAG 3 cut(s) 486, 786, 991
ZrmI AGTACT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.