RchiOBHm_Chr5g0034211

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000420
Physical Location & Seq
Reverse (-)
28098439 .. 28100138
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31324

Sequence Viewer

Length: 1482 bp
ATGGAGAAATTTTGTCCTGAACTTTCAGGAGTAATACCTGTCCATGAATATGATCTCAAGTATTCGAGCCATTGCCTTTCTGCAAAGAACTGCACTACTTCAGTTTCTTCTTCTGAGTGTTTGCCCAGTGTTATTGCATTAAGGGATATCGAGTGTTTGGAAGACAAAAGAAGGTTGAGAGTTCTGTTACAATTTGCAGACATGAGAAACATCTGGTATCATATGCCATGCAATCCCAGTACAACTTTGGTTGGGGAGGGATCATGGGTTGCAGAGAAAAATCAGCTATATGTTGTTGCATGTCCATTCTTAGATGCTGGAGCAGATTCTTTCAATAGTTCTCACGTTGGTGATTGTTCAACAAGATTGAGCTTGACATTTCCTGTAATATGGACAATCAGAGATACCAGAAGCACCGCAGGGCACATTTGGAGCAACAAAACTGTGAAAGTGTTGGGCTACTCTGAAAACATTACATTTGAAAGTTTTCAGACTTATGTTGGGAGGGGAGGGTTCTACTTAAAAGGTCAGAAATATGAGTATACCCAAATTGAAAAAGTAACCAAGTTGTGCCCCAGGGAGAAGAGCACTGCTGCCAATGATTACAAGACCAACATATACCCGAATCCATTTTCTTATGACATGAGATTCGATCTGTTTGCTAGAAAATCTAAAACAGAAGTTAAATGGGGAAGCTCTTCTCCTCTTGCTGTAGGAAATCGGTTGTACGAACCAGCATCATATTCAATTGGAGATGCAGACTCTACAGCAGATAAGCACAGCAGCTCCTACAACATCAGCTACTATATATTCATCAATTTGGGGCGATACTCAGAACCTCTTCAGTTTGAACGTGTGGATTTATCTGCAGCTGACCAGTACACGGCTGAAGTAGATCAATCCAATGGGAGGGTGGAGGTGGAGATCACCTTGGCTCTCATATCCACCACACTTGCGTGTGTTTTTGTGGCATTACAACTCTTGCATGTGAAGAAACATCCTGATATGCTTCCCTCCATTTCAATCTTGATGCTGCTTATTCTGACCCTTGGCTACATGATACCTGTTATGTATTACTTTGAAGCCACCTTCGTGCATAACACCAACCTTCGAAACGCGTTCCTTGGAAGTGGTGGACGGCTTCAAATGTATAAGGTAATTGCAAGGGTAATAACAGTAATAACACTGGTAGCTTTCTTGTTGCAATTCCACCTTTTGCGGCATGTATGGTCGGAAAGATTTGCAAATGGAACCTTTAAGGAGCTTTGGAATGTGGAGAAGAAGGCTTTATCAGTATATGCAATAGGGGTTTTAGCTGTTATGGCGCTTCTGGTGAATTCAAGTCACCAACAGTATCTCATTTTGGGTTCAAGCAGCTATGGTGCTTATGCTGGTTTGGTGTTGGATGGCTTTCTGTTTCCTCAAATTCTACTCAATGTGGTCTGCAAATCAAAGGAAAAATCTCTGTCAATTTGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

493

Amino Acids

55.61

Weight (kDa)

8.16

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 21 - 158 6.1e-20 DUF2921 lipocalin-like domain
DUF2921 PF11145 299 - 493 8.4e-32 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 542
AccII CGCG 1 cut(s) 1118
AciI CCGC 2 cut(s) 417, 1219
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 3 cut(s) 8, 1336, 1425
AcuI CTGAAG 3 cut(s) 84, 827, 909
AfaI GTAC 3 cut(s) 241, 728, 881
AfiI CCNNNNNNNGG 2 cut(s) 883, 909
AflIII ACRYGT 2 cut(s) 853, 1116
AjnI CCWGG 1 cut(s) 575
AleI CACNNNNGTG 3 cut(s) 348, 955, 1091
Alw21I GWGCWC 1 cut(s) 590
AlwI GGATC 1 cut(s) 268
ApeKI GCWGC 5 cut(s) 593, 783, 869, 1033, 1374
ApoI RAATTY 3 cut(s) 8, 1336, 1425
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
Asp700I GAANNNNTTC 3 cut(s) 486, 697, 840
AspLEI GCGC 1 cut(s) 1327
AsuHPI GGTGA 4 cut(s) 362, 919, 1337, 1345
AsuII TTCGAA 1 cut(s) 1111
BaeGI GKGCMC 2 cut(s) 426, 575
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 5 cut(s) 580, 795, 881, 1020, 1386
BccI CCATC 1 cut(s) 1400
BceAI ACGGC 2 cut(s) 900, 1154
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BciT130I CCWGG 1 cut(s) 577
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 3 cut(s) 711, 765, 867
BfoI RGCGCY 1 cut(s) 1328
BisI GCNGC 6 cut(s) 594, 784, 870, 1034, 1220, 1375
BlsI GCNGC 6 cut(s) 595, 785, 871, 1035, 1221, 1376
Bme1390I CCNGG 1 cut(s) 577
BmiI GGNNCC 1 cut(s) 1252
BmrFI CCNGG 1 cut(s) 577
BmrI ACTGGG 2 cut(s) 120, 231
BmsI GCATC 4 cut(s) 304, 745, 746, 1020
BmuI ACTGGG 2 cut(s) 120, 231
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 1111
BpuEI CTTGAG 1 cut(s) 41
BsaJI CCNNGG 5 cut(s) 575, 576, 930, 1048, 1123
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bsc4I CCNNNNNNNGG 2 cut(s) 883, 909
Bse1I ACTGG 4 cut(s) 126, 237, 877, 1191
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 577
BseDI CCNNGG 5 cut(s) 575, 576, 930, 1048, 1123
BseGI GGATG 2 cut(s) 997, 1411
BseLI CCNNNNNNNGG 2 cut(s) 883, 909
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 105, 846
BseNI ACTGG 4 cut(s) 126, 237, 877, 1191
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 2 cut(s) 426, 575
BseXI GCAGC 5 cut(s) 580, 795, 881, 1020, 1386
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 1118
BsiHKAI GWGCWC 1 cut(s) 590
BslI CCNNNNNNNGG 2 cut(s) 883, 909
Bsp119I TTCGAA 1 cut(s) 1111
Bsp1286I GDGCHC 3 cut(s) 426, 575, 590
Bsp143I GATC 5 cut(s) 52, 260, 652, 895, 924
BspACI CCGC 2 cut(s) 417, 1219
BspCNI CTCAG 2 cut(s) 106, 845
BspFNI CGCG 1 cut(s) 1118
BspLI GGNNCC 1 cut(s) 1252
BspMAI CTGCAG 1 cut(s) 871
BspPI GGATC 1 cut(s) 268
BspQI GCTCTTC 2 cut(s) 578, 703
BspT104I TTCGAA 1 cut(s) 1111
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 4 cut(s) 126, 237, 877, 1191
BssECI CCNNGG 5 cut(s) 575, 576, 930, 1048, 1123
BssMI GATC 5 cut(s) 52, 260, 652, 895, 924
BssNAI GTATAC 1 cut(s) 543
BssT1I CCWWGG 3 cut(s) 930, 1048, 1123
Bst1107I GTATAC 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 577
Bst4CI ACNGT 3 cut(s) 445, 1177, 1353
Bst6I CTCTTC 3 cut(s) 578, 703, 846
BstBI TTCGAA 1 cut(s) 1111
BstDEI CTNAG 3 cut(s) 114, 310, 832
BstF5I GGATG 2 cut(s) 997, 1411
BstFNI CGCG 1 cut(s) 1118
BstH2I RGCGCY 1 cut(s) 1328
BstHHI GCGC 1 cut(s) 1327
BstKTI GATC 5 cut(s) 55, 263, 655, 898, 927
BstMBI GATC 5 cut(s) 52, 260, 652, 895, 924
BstMWI GCNNNNNNNGC 1 cut(s) 1322
BstNI CCWGG 1 cut(s) 577
BstNSI RCATGY 3 cut(s) 303, 989, 1226
BstSCI CCNGG 1 cut(s) 575
BstSFI CTRYAG 3 cut(s) 711, 765, 867
BstSLI GKGCMC 2 cut(s) 426, 575
BstUI CGCG 1 cut(s) 1118
BstV1I GCAGC 5 cut(s) 580, 795, 881, 1020, 1386
BstV2I GAAGAC 1 cut(s) 168
BstZ17I GTATAC 1 cut(s) 543
BtsCI GGATG 2 cut(s) 997, 1411
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 133, 588, 1184
CfoI GCGC 1 cut(s) 1327
Csp6I GTAC 3 cut(s) 240, 727, 880
CspCI CAANNNNNGTGG 2 cut(s) 934, 969
CviAII CATG 9 cut(s) 44, 202, 228, 264, 300, 643, 986, 1057, 1223
CviQI GTAC 3 cut(s) 240, 727, 880
DdeI CTNAG 3 cut(s) 114, 310, 832
DpnI GATC 5 cut(s) 54, 262, 654, 897, 926
DpnII GATC 5 cut(s) 52, 260, 652, 895, 924
Eam1104I CTCTTC 3 cut(s) 578, 703, 846
EarI CTCTTC 3 cut(s) 578, 703, 846
Eco130I CCWWGG 3 cut(s) 930, 1048, 1123
Eco32I GATATC 1 cut(s) 148
Eco57I CTGAAG 3 cut(s) 84, 827, 909
EcoRI GAATTC 1 cut(s) 1336
EcoRII CCWGG 1 cut(s) 575
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 3 cut(s) 930, 1048, 1123
ErhI CCWWGG 3 cut(s) 930, 1048, 1123
FaeI CATG 9 cut(s) 47, 205, 231, 267, 303, 646, 989, 1060, 1226
FatI CATG 9 cut(s) 43, 201, 227, 263, 299, 642, 985, 1056, 1222
FauNDI CATATG 1 cut(s) 222
FblI GTMKAC 1 cut(s) 542
Fnu4HI GCNGC 6 cut(s) 594, 784, 870, 1034, 1220, 1375
FokI GGATG 2 cut(s) 984, 1418
Fsp4HI GCNGC 6 cut(s) 594, 784, 870, 1034, 1220, 1375
FspBI CTAG 1 cut(s) 663
GlaI GCGC 1 cut(s) 1326
GluI GCNGC 6 cut(s) 594, 784, 870, 1034, 1220, 1375
GsuI CTGGAG 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 1328
HhaI GCGC 1 cut(s) 1327
Hin1II CATG 9 cut(s) 47, 205, 231, 267, 303, 646, 989, 1060, 1226
Hin6I GCGC 1 cut(s) 1325
HinP1I GCGC 1 cut(s) 1325
HinfI GANTC 4 cut(s) 326, 625, 648, 761
HphI GGTGA 4 cut(s) 362, 919, 1337, 1345
Hpy166II GTNNAC 3 cut(s) 543, 882, 1136
Hpy188I TCNGA 8 cut(s) 115, 401, 466, 492, 531, 835, 1044, 1234
Hpy188III TCNNGA 4 cut(s) 17, 27, 1001, 1027
Hpy8I GTNNAC 3 cut(s) 543, 882, 1136
HpyAV CCTTC 4 cut(s) 165, 1099, 1118, 1276
HpyCH4III ACNGT 3 cut(s) 445, 1177, 1353
HpyCH4IV ACGT 2 cut(s) 345, 853
HpyF10VI GCNNNNNNNGC 1 cut(s) 1322
HpyF3I CTNAG 3 cut(s) 114, 310, 832
HpySE526I ACGT 2 cut(s) 345, 853
Hsp92II CATG 9 cut(s) 47, 205, 231, 267, 303, 646, 989, 1060, 1226
HspAI GCGC 1 cut(s) 1325
Kzo9I GATC 5 cut(s) 52, 260, 652, 895, 924
LguI GCTCTTC 2 cut(s) 578, 703
LmnI GCTCC 4 cut(s) 320, 432, 791, 1261
Lsp1109I GCAGC 5 cut(s) 580, 795, 881, 1020, 1386
LweI GCATC 4 cut(s) 304, 745, 746, 1020
MaeI CTAG 1 cut(s) 663
MaeII ACGT 2 cut(s) 345, 853
MaeIII GTNAC 3 cut(s) 186, 559, 1343
MalI GATC 5 cut(s) 54, 262, 654, 897, 926
MboI GATC 5 cut(s) 52, 260, 652, 895, 924
MboII GAAGA 8 cut(s) 99, 102, 173, 595, 690, 833, 1003, 1291
MfeI CAATTG 1 cut(s) 747
MhlI GDGCHC 3 cut(s) 426, 575, 590
MluI ACGCGT 1 cut(s) 1116
MlyI GAGTC 1 cut(s) 755
MmeI TCCRAC 2 cut(s) 1212, 1383
MnlI CCTC 9 cut(s) 250, 498, 503, 714, 849, 903, 910, 1024, 1431
MroXI GAANNNNTTC 3 cut(s) 486, 697, 840
MseI TTAA 4 cut(s) 140, 521, 684, 1257
MslI CAYNNNNRTG 4 cut(s) 48, 348, 955, 1091
MspA1I CMGCKG 1 cut(s) 872
MspR9I CCNGG 1 cut(s) 577
MunI CAATTG 1 cut(s) 747
MvaI CCWGG 1 cut(s) 577
MvnI CGCG 1 cut(s) 1118
MwoI GCNNNNNNNGC 1 cut(s) 1322
NdeI CATATG 1 cut(s) 222
NdeII GATC 5 cut(s) 52, 260, 652, 895, 924
NlaIII CATG 9 cut(s) 47, 205, 231, 267, 303, 646, 989, 1060, 1226
NlaIV GGNNCC 1 cut(s) 1252
NmuCI GTSAC 1 cut(s) 1343
NspI RCATGY 3 cut(s) 303, 989, 1226
NspV TTCGAA 1 cut(s) 1111
OliI CACNNNNGTG 3 cut(s) 348, 955, 1091
PasI CCCWGGG 1 cut(s) 576
PciSI GCTCTTC 2 cut(s) 578, 703
PdmI GAANNNNTTC 3 cut(s) 486, 697, 840
PfeI GAWTC 3 cut(s) 326, 625, 648
PkrI GCNGC 6 cut(s) 595, 785, 871, 1035, 1221, 1376
PleI GAGTC 1 cut(s) 755
PpsI GAGTC 1 cut(s) 755
Psp6I CCWGG 1 cut(s) 575
PspGI CCWGG 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 1252
PstI CTGCAG 1 cut(s) 871
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 3 cut(s) 241, 728, 881
RsaNI GTAC 3 cut(s) 240, 727, 880
RseI CAYNNNNRTG 4 cut(s) 48, 348, 955, 1091
SapI GCTCTTC 2 cut(s) 578, 703
SaqAI TTAA 4 cut(s) 140, 521, 684, 1257
SatI GCNGC 6 cut(s) 594, 784, 870, 1034, 1220, 1375
Sau3AI GATC 5 cut(s) 52, 260, 652, 895, 924
SchI GAGTC 1 cut(s) 755
ScrFI CCNGG 1 cut(s) 577
SduI GDGCHC 3 cut(s) 426, 575, 590
SfaNI GCATC 4 cut(s) 304, 745, 746, 1020
SfcI CTRYAG 3 cut(s) 711, 765, 867
SfuI TTCGAA 1 cut(s) 1111
SmiMI CAYNNNNRTG 4 cut(s) 48, 348, 955, 1091
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SsiI CCGC 2 cut(s) 417, 1219
SspMI CTAG 1 cut(s) 663
StyD4I CCNGG 1 cut(s) 575
StyI CCWWGG 3 cut(s) 930, 1048, 1123
TaaI ACNGT 3 cut(s) 445, 1177, 1353
TaiI ACGT 2 cut(s) 348, 856
TaqI TCGA 4 cut(s) 65, 150, 651, 1111
TatI WGTACW 2 cut(s) 239, 879
TauI GCSGC 1 cut(s) 1222
TfiI GAWTC 3 cut(s) 326, 625, 648
Tru1I TTAA 4 cut(s) 140, 521, 684, 1257
Tru9I TTAA 4 cut(s) 140, 521, 684, 1257
TscAI CASTG 3 cut(s) 133, 595, 1191
TseFI GTSAC 1 cut(s) 1343
TseI GCWGC 5 cut(s) 593, 783, 869, 1033, 1374
Tsp45I GTSAC 1 cut(s) 1343
TspDTI ATGAA 2 cut(s) 60, 802
TspRI CASTG 3 cut(s) 133, 595, 1191
XapI RAATTY 3 cut(s) 8, 1336, 1425
XceI RCATGY 3 cut(s) 303, 989, 1226
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 910
XmiI GTMKAC 1 cut(s) 542
XmnI GAANNNNTTC 3 cut(s) 486, 697, 840
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.