Prupe.4G182200_v2.0.a1

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000420
Physical Location & Seq
Forward (+)
10807107 .. 10808984
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G182200.1

Sequence Viewer

Length: 579 bp
ATGCTGCTGGCTTTCTTGTTCCATCAACGTCTCCTCCAGCTGAAATGGTACACACAGTTGCATGATCACAACCTCAAGGCTTCCTGGGTTGCTGAGAAGAAGGTGTTCCTTGCTTGTTCACCATTATACATAGCAGGGGGCTTTGTTGCTCTGTTCATGAACGTCAAGCAGAACCAACTTCACATTGTAAAGCATTTTCTTTGGGGCCGTTTAAGATCCTATGCCGGTCTAGTTCTTGATTGCTTTGTTTTCCCTCAAGTCCTCCTCAACATTTTTCTCAACTCAAAGAAAAGTGCTCTTTCTTGGACATTTTACCTTGGAATCGCTTTTATGCGTGTGCTTCCACACGCATATGACCTTTACAGGGAAAAAACCTATGATCCTTGGTCATCCAAGTTTTCTATCGATCCTCATGCAAGTTTCTTCTCCGGCTCTCAGGACGTCATTGTCTGTTCTGTATATCTGCTATTTGCTGCAATCATCCGCTTGCAGCAGCGGTTTGGCAGACGATGTATCCTTCCAATTAGATTTAGGGGACATGAAGATTATGAGAAAGTTCTAGGGTCTAGTGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

193

Amino Acids

22.46

Weight (kDa)

9.67

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AatII GACGTC 1 cut(s) 444
AciI CCGC 2 cut(s) 484, 496
AclWI GGATC 3 cut(s) 210, 374, 401
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 364
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 3 cut(s) 210, 374, 401
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 4, 473, 490, 493
Asp700I GAANNNNTTC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 3 cut(s) 460, 502, 505
BccI CCATC 1 cut(s) 30
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 1 cut(s) 85
BciVI GTATCC 1 cut(s) 524
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 3 cut(s) 230, 560, 567
BfuI GTATCC 1 cut(s) 524
BisI GCNGC 4 cut(s) 5, 474, 491, 494
BlsI GCNGC 4 cut(s) 6, 475, 492, 495
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 59, 240
Bsa29I ATCGAT 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 84, 316, 383
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse118I RCCGGY 1 cut(s) 224
BseBI CCWGG 1 cut(s) 85
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 84, 316, 383
BseGI GGATG 2 cut(s) 389, 480
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 84, 449
BseRI GAGGAG 2 cut(s) 23, 254
BseXI GCAGC 3 cut(s) 460, 502, 505
BshFI GGCC 1 cut(s) 207
BshVI ATCGAT 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 2 cut(s) 225, 429
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 549
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 4 cut(s) 64, 215, 379, 406
BspACI CCGC 2 cut(s) 484, 496
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 85, 448
BspDI ATCGAT 1 cut(s) 405
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 3 cut(s) 210, 374, 401
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 84, 316, 383
BssMI GATC 4 cut(s) 64, 215, 379, 406
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 316, 383
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 9, 488
BstDEI CTNAG 2 cut(s) 93, 435
BstF5I GGATG 2 cut(s) 389, 480
BstKTI GATC 4 cut(s) 67, 218, 382, 409
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 4 cut(s) 64, 215, 379, 406
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstV1I GCAGC 3 cut(s) 460, 502, 505
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 405
BsuI GTATCC 1 cut(s) 524
BsuRI GGCC 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 405
BtsCI GGATG 2 cut(s) 389, 480
Cac8I GCNNGC 2 cut(s) 9, 488
CciI TCATGA 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 1 cut(s) 49
CviAII CATG 4 cut(s) 62, 157, 413, 539
CviJI RGCY 6 cut(s) 11, 40, 80, 141, 207, 432
CviKI_1 RGCY 6 cut(s) 11, 40, 80, 141, 207, 432
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 2 cut(s) 93, 435
DpnI GATC 4 cut(s) 66, 217, 381, 408
DpnII GATC 4 cut(s) 64, 215, 379, 406
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
Eco130I CCWWGG 2 cut(s) 316, 383
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 316, 383
ErhI CCWWGG 2 cut(s) 316, 383
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 4 cut(s) 65, 160, 416, 542
FaqI GGGAC 1 cut(s) 549
FatI CATG 4 cut(s) 61, 156, 412, 538
FauNDI CATATG 1 cut(s) 352
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 5, 474, 491, 494
FokI GGATG 2 cut(s) 376, 467
Fsp4HI GCNGC 4 cut(s) 5, 474, 491, 494
FspBI CTAG 3 cut(s) 230, 560, 567
GluI GCNGC 4 cut(s) 5, 474, 491, 494
GsuI CTGGAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 207
HapII CCGG 2 cut(s) 225, 429
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 4 cut(s) 65, 160, 416, 542
HinfI GANTC 1 cut(s) 321
HpaII CCGG 2 cut(s) 225, 429
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 2 cut(s) 51, 119
Hpy188III TCNNGA 3 cut(s) 157, 236, 437
Hpy8I GTNNAC 2 cut(s) 51, 119
HpyAV CCTTC 2 cut(s) 94, 527
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 3 cut(s) 28, 162, 441
HpyCH4V TGCA 4 cut(s) 61, 416, 476, 490
HpyF3I CTNAG 2 cut(s) 93, 435
HpySE526I ACGT 3 cut(s) 28, 162, 441
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 4 cut(s) 65, 160, 416, 542
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 64, 215, 379, 406
LpnPI CCDG 8 cut(s) 50, 70, 97, 120, 238, 349, 422, 442
Lsp1109I GCAGC 3 cut(s) 460, 502, 505
MaeI CTAG 3 cut(s) 230, 560, 567
MaeII ACGT 3 cut(s) 28, 162, 441
MaeIII GTNAC 1 cut(s) 569
MalI GATC 4 cut(s) 66, 217, 381, 408
MboI GATC 4 cut(s) 64, 215, 379, 406
MboII GAAGA 3 cut(s) 109, 415, 554
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 1 cut(s) 522
MnlI CCTC 6 cut(s) 44, 83, 264, 272, 275, 420
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 2 cut(s) 40, 496
MspI CCGG 2 cut(s) 225, 429
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 352
NdeII GATC 4 cut(s) 64, 215, 379, 406
NlaIII CATG 4 cut(s) 65, 160, 416, 542
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 569
PagI TCATGA 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 4 cut(s) 6, 475, 492, 495
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 4 cut(s) 5, 474, 491, 494
Sau3AI GATC 4 cut(s) 64, 215, 379, 406
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 298
SetI ASST 9 cut(s) 31, 42, 75, 105, 165, 318, 360, 377, 444
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 74, 255
SmoI CTYRAG 2 cut(s) 74, 255
Sse9I AATT 1 cut(s) 522
SsiI CCGC 2 cut(s) 484, 496
SspMI CTAG 3 cut(s) 230, 560, 567
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 2 cut(s) 316, 383
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 3 cut(s) 31, 165, 444
TaqI TCGA 1 cut(s) 405
TasI AATT 1 cut(s) 522
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 4 cut(s) 4, 473, 490, 493
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 3 cut(s) 145, 173, 555
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 3 cut(s) 230, 560, 567
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.