Rh5CG071200

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000420
Physical Location & Seq
Reverse (-)
5323687 .. 5324169
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG071200.1

Sequence Viewer

Length: 483 bp
ATGCAACTCCCTCCAATTTTCACTCCTTATACACCCAACACTGCAACGACGTCGTTCCAAACTCCCACCCCTTCCCCTCAAAACCGCTCCTCAACGACATCGGCACCGGCTACTTCACCGGCGGCGGCAGGCTTTTCAATCGTCAGAGGGAGCTTGGCTCTTAAAGTTGAATCTGCTCCGGTGATCTCACGGCTCTTTCGGCTCAATGGGTACTATTCCGATTCCGGTGACAAGCTCTGTATGGTTGGTACTGTTTCTCACATCAGTTCTGAGTCTCTGGTTGCTCTGAAGCTTAATTATCCCAAAAATACTAGTATTTTCGATATTTTAGTGACCGGGACTTTGGAGAGTGTTTCTGATGAGATAGATTTGAATTATTTTGAACCCATTTCGATACTGGGGTTATCTCGGAAATCTGGTTATCAGCCCACATTCATTGGGAATGGTCATCTGAATGGCTCTTTGGTTGGTTATGACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

160

Amino Acids

17.07

Weight (kDa)

6.05

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 66 - 131 2.2e-14 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 103
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 3 cut(s) 85, 122, 125
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 2 cut(s) 212, 250
AgsI TTSAA 4 cut(s) 138, 170, 373, 383
AhlI ACTAGT 1 cut(s) 311
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 3 cut(s) 153, 235, 292
AluI AGCT 3 cut(s) 153, 235, 292
Alw26I GTCTC 1 cut(s) 279
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 3 cut(s) 108, 193, 239
BaeI ACNNNNGTAYC 2 cut(s) 386, 419
BanI GGYRCC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 279
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 1 cut(s) 312
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 337
BmrI ACTGGG 1 cut(s) 407
BmuI ACTGGG 1 cut(s) 407
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpuMI CCSGG 1 cut(s) 337
BsaHI GRCGYC 1 cut(s) 50
BsaWI WCCGGW 2 cut(s) 178, 224
Bse118I RCCGGY 2 cut(s) 106, 118
Bse1I ACTGG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 103
BsiSI CCGG 5 cut(s) 107, 119, 179, 225, 336
BslFI GGGAC 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 352
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 3 cut(s) 85, 122, 125
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 87
BsrFI RCCGGY 2 cut(s) 106, 118
BsrI ACTGG 1 cut(s) 402
BssAI RCCGGY 2 cut(s) 106, 118
BssMI GATC 1 cut(s) 183
BssNI GRCGYC 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 253
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 270
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 130
Cfr10I RCCGGY 2 cut(s) 106, 118
Csp6I GTAC 2 cut(s) 211, 249
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviQI GTAC 2 cut(s) 211, 249
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 308
FaiI YATR 4 cut(s) 30, 242, 474, 481
FaqI GGGAC 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 123, 126
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 1 cut(s) 312
GluI GCNGC 2 cut(s) 123, 126
HapII CCGG 5 cut(s) 107, 119, 179, 225, 336
Hin1I GRCGYC 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 3 cut(s) 170, 221, 272
HpaII CCGG 5 cut(s) 107, 119, 179, 225, 336
HphI GGTGA 3 cut(s) 108, 193, 239
Hpy188I TCNGA 7 cut(s) 146, 220, 271, 288, 358, 411, 453
Hpy99I CGWCG 2 cut(s) 52, 55
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 4, 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 3 cut(s) 92, 150, 181
LpnPI CCDG 9 cut(s) 114, 120, 132, 192, 238, 263, 349, 383, 402
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 227, 331
MalI GATC 1 cut(s) 185
MbiI CCGCTC 1 cut(s) 87
MboI GATC 1 cut(s) 183
MluCI AATT 3 cut(s) 15, 295, 373
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 4 cut(s) 21, 87, 100, 140
MseI TTAA 2 cut(s) 162, 294
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 5 cut(s) 107, 119, 179, 225, 336
MspR9I CCNGG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 337
NdeII GATC 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 227, 331
PfeI GAWTC 2 cut(s) 170, 221
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 105
RsaI GTAC 2 cut(s) 212, 250
RsaNI GTAC 2 cut(s) 211, 249
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 2 cut(s) 162, 294
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 1 cut(s) 183
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 337
SetI ASST 4 cut(s) 53, 155, 237, 294
SgrAI CRCCGGYG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 453
SpeI ACTAGT 1 cut(s) 311
Sse9I AATT 3 cut(s) 15, 295, 373
SsiI CCGC 3 cut(s) 85, 122, 125
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 321, 392
TasI AATT 3 cut(s) 15, 295, 373
TauI GCSGC 2 cut(s) 125, 128
TfiI GAWTC 2 cut(s) 170, 221
Tru1I TTAA 2 cut(s) 162, 294
Tru9I TTAA 2 cut(s) 162, 294
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 2 cut(s) 227, 331
Tsp45I GTSAC 2 cut(s) 227, 331
TspDTI ATGAA 1 cut(s) 424
TspRI CASTG 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XspI CTAG 1 cut(s) 312
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.