Rh5BG236600

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000420
Physical Location & Seq
Reverse (-)
28240959 .. 28242078
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG236600.1

Sequence Viewer

Length: 351 bp
ATGACCATCTCCATGAAGCTTTTCATATCCTTCTTTGTTTTTACCACCATTTCCTTCAATTCATTGTCGTTCTCTGCTTCAGCTGCTCTAATCTCTTATGCTGACCATTGTGCTTCAGTTGTTCCCGAGTCAACCGAAAATATAAATGCAGGATCTCAGTTTGTACATCTGATTCACACAGGCTACTACTACACTGGTGGTGGCAGTGACATTCTTAATCTATACTCGCCCGATGATCAGGTCAAAAATTCAGTTGGCTTCCAATGCTGGGATATTAGTGAAACTCATGTACAAGGCTTGTTTAAGGTCGAGGCAACTCGATCTAGAGTTTCAAGTAACCAATATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

116

Amino Acids

12.81

Weight (kDa)

5.09

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 2 cut(s) 63, 99
AfaI GTAC 2 cut(s) 165, 291
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 2 cut(s) 58, 333
AluBI AGCT 2 cut(s) 19, 83
AluI AGCT 2 cut(s) 19, 83
AlwI GGATC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 125
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 14
BclI TGATCA 1 cut(s) 235
BfaI CTAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 125
Bsp1407I TGTACA 2 cut(s) 163, 289
Bsp143I GATC 3 cut(s) 152, 235, 320
BspCNI CTCAG 1 cut(s) 169
BspPI GGATC 1 cut(s) 160
BsrGI TGTACA 2 cut(s) 163, 289
BsrI ACTGG 1 cut(s) 199
BssMI GATC 3 cut(s) 152, 235, 320
BstAUI TGTACA 2 cut(s) 163, 289
BstDEI CTNAG 1 cut(s) 156
BstKTI GATC 3 cut(s) 155, 238, 323
BstMBI GATC 3 cut(s) 152, 235, 320
BstMWI GCNNNNNNNGC 2 cut(s) 83, 264
BstV1I GCAGC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 192, 211
Csp6I GTAC 2 cut(s) 164, 290
CviAII CATG 2 cut(s) 13, 287
CviJI RGCY 5 cut(s) 19, 83, 183, 258, 297
CviKI_1 RGCY 5 cut(s) 19, 83, 183, 258, 297
CviQI GTAC 2 cut(s) 164, 290
DdeI CTNAG 1 cut(s) 156
DpnI GATC 3 cut(s) 154, 237, 322
DpnII GATC 3 cut(s) 152, 235, 320
Eco57I CTGAAG 2 cut(s) 63, 99
Eco88I CYCGRG 1 cut(s) 125
FaeI CATG 2 cut(s) 16, 290
FaiI YATR 7 cut(s) 14, 26, 99, 143, 223, 288, 345
FatI CATG 2 cut(s) 12, 286
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 324
GluI GCNGC 1 cut(s) 84
GsaI CCCAGC 1 cut(s) 271
Hin1II CATG 2 cut(s) 16, 290
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 128, 172
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 2 cut(s) 125, 324
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 40, 64
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 264
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 16, 290
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 152, 235, 320
LpnPI CCDG 5 cut(s) 135, 165, 180, 224, 253
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 206, 335
MalI GATC 3 cut(s) 154, 237, 322
MboI GATC 3 cut(s) 152, 235, 320
MflI RGATCY 1 cut(s) 152
MluCI AATT 2 cut(s) 58, 247
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 2 cut(s) 216, 303
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 83, 264
NdeII GATC 3 cut(s) 152, 235, 320
NlaIII CATG 2 cut(s) 16, 290
NmuCI GTSAC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 165, 291
RsaNI GTAC 2 cut(s) 164, 290
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 2 cut(s) 216, 303
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 152, 235, 320
SchI GAGTC 1 cut(s) 137
SetI ASST 4 cut(s) 21, 85, 243, 309
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 2 cut(s) 58, 247
SspMI CTAG 1 cut(s) 324
TaqI TCGA 2 cut(s) 309, 319
TasI AATT 2 cut(s) 58, 247
TatI WGTACW 2 cut(s) 163, 289
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 2 cut(s) 216, 303
Tru9I TTAA 2 cut(s) 216, 303
TscAI CASTG 2 cut(s) 199, 211
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 13, 29, 51
TspRI CASTG 2 cut(s) 199, 211
XapI RAATTY 1 cut(s) 247
XbaI TCTAGA 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.