Rmu_ssc0000128.1_g000032

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000128.1
OG0000420
Physical Location & Seq
Reverse (-)
160382 .. 161536
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000128.1_g000032.1.cds

Sequence Viewer

Length: 1155 bp
atggggatttttgctgaagggctatatgatggcggagatggaagcctgtgtatggtaggttgccgatatttgagctcaaacagtcaccaacagccaacatatgattctgtagactgtgagattgttgttaaggttcagtttcctccaacaaatccaaacagtacctatttgggttttatcaagggaagcatcgaaagcacaagagaaatgtctgatcctcttcattttgagggattggatttgacctcagctgctggtaacgtggtcgaagcaagccaatccatttggagaatggatgtggagatcatattggttgttatatccaacacactagcttgtgtttttggggcattacaactctttcatgtgaaacggaatccggatgtgctcccatccatttctatcttgatgctgtatattcttgctcttggctacatgatacctcttatgctaaactttgatgccttgttcacacaacatggtagccaaactgtgttccttggaagtggatggcttgaactcaatgaagtaattgtaagggtagtaacaatggtaggtttcttgctgcaaattcgtcttctgcagataacaatgtcagcaaaatcagcaaatggaaaccaaaaggagctctgggcagtggagaagctggctctctttgtggctttaccagtatatgttggagggtccttggttgctttgcttctgatgaactggaggaggaacgatattgctgtgatggtttcgagtggtcaaaagcatcccattttgggtactattttgaaatcttgtgctggtttgttcttggatgcatttttgttccctcaaattcttctcaacatgttctccaaatcaacggaaaaggcattgtcagtttcgttcttcgttggaacaactcttgttcgtgtgctgccacatgcatatgatctttacagggctcatacctctggtcaccaattgaaagattcatacatttatgcaagccctgcagcagacttttactctactgcttggaatgtcattattccttttggaggtctactttttgctgtgataatctacttgcagcagcgctttgggggttgctgcattcttcctcagaagttcatagagttggttgaatatgagaaggtgcctgtcgttactgaagcgtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

384

Amino Acids

42.36

Weight (kDa)

5.75

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1129
AccI GTMKAC 2 cut(s) 111, 1036
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 1 cut(s) 33
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 2 cut(s) 570, 825
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 163, 772
AfeI AGCGCT 1 cut(s) 1070
AfiI CCNNNNNNNGG 3 cut(s) 52, 767, 1031
AflIII ACRYGT 1 cut(s) 837
AgsI TTSAA 4 cut(s) 518, 781, 958, 1118
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 5 cut(s) 75, 251, 335, 628, 646
AluI AGCT 5 cut(s) 75, 251, 335, 628, 646
Alw21I GWGCWC 3 cut(s) 77, 390, 630
AlwI GGATC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 379
Aor51HI AGCGCT 1 cut(s) 1070
ApeKI GCWGC 7 cut(s) 251, 565, 907, 986, 1063, 1066, 1083
ApoI RAATTY 2 cut(s) 570, 825
AspLEI GCGC 1 cut(s) 1071
AspS9I GGNCC 1 cut(s) 684
AsuHPI GGTGA 2 cut(s) 77, 941
AvaII GGWCC 1 cut(s) 684
BanI GGYRCC 1 cut(s) 1129
BanII GRGCYC 3 cut(s) 77, 630, 937
BbsI GAAGAC 1 cut(s) 569
Bbv12I GWGCWC 3 cut(s) 77, 390, 630
BbvCI CCTCAGC 1 cut(s) 247
BbvI GCAGC 7 cut(s) 238, 552, 894, 998, 1070, 1075, 1078
BccI CCATC 5 cut(s) 23, 32, 400, 504, 730
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 3 cut(s) 108, 581, 984
BfoI RGCGCY 1 cut(s) 1072
BisI GCNGC 7 cut(s) 252, 566, 908, 987, 1064, 1067, 1084
BlsI GCNGC 7 cut(s) 253, 567, 909, 988, 1065, 1068, 1085
Bme18I GGWCC 1 cut(s) 684
BmgT120I GGNCC 1 cut(s) 684
BmiI GGNNCC 2 cut(s) 685, 1131
BmsI GCATC 5 cut(s) 198, 399, 451, 766, 796
BpiI GAAGAC 1 cut(s) 569
BpmI CTGGAG 1 cut(s) 733
Bpu10I CCTNAGC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 499, 687
BsaWI WCCGGW 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 767, 1031
Bse1I ACTGG 2 cut(s) 668, 716
BseAI TCCGGA 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 499, 687
BseGI GGATG 6 cut(s) 301, 388, 392, 515, 757, 811
BseLI CCNNNNNNNGG 3 cut(s) 52, 767, 1031
BseMII CTCAG 2 cut(s) 261, 1109
BseNI ACTGG 2 cut(s) 668, 716
BseRI GAGGAG 1 cut(s) 730
BseXI GCAGC 7 cut(s) 238, 552, 894, 998, 1070, 1075, 1078
BshNI GGYRCC 1 cut(s) 1129
BsiHKAI GWGCWC 3 cut(s) 77, 390, 630
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 3 cut(s) 52, 767, 1031
BsmI GAATGC 1 cut(s) 1086
Bsp1286I GDGCHC 4 cut(s) 77, 390, 630, 937
Bsp13I TCCGGA 1 cut(s) 379
Bsp143I GATC 3 cut(s) 214, 303, 922
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 2 cut(s) 260, 1108
BspEI TCCGGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 685, 1131
BspMAI CTGCAG 2 cut(s) 585, 988
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 1129
BsrI ACTGG 2 cut(s) 668, 716
BssECI CCNNGG 2 cut(s) 499, 687
BssMI GATC 3 cut(s) 214, 303, 922
BssT1I CCWWGG 2 cut(s) 499, 687
Bst4CI ACNGT 4 cut(s) 83, 116, 161, 493
Bst6I CTCTTC 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 983
BstC8I GCNNGC 3 cut(s) 274, 648, 979
BstDEI CTNAG 2 cut(s) 247, 1095
BstEII GGTNACC 1 cut(s) 947
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 6 cut(s) 301, 388, 392, 515, 757, 811
BstH2I RGCGCY 1 cut(s) 1072
BstHHI GCGC 1 cut(s) 1071
BstKTI GATC 3 cut(s) 217, 306, 925
BstMBI GATC 3 cut(s) 214, 303, 922
BstMWI GCNNNNNNNGC 3 cut(s) 195, 605, 983
BstNSI RCATGY 2 cut(s) 841, 917
BstPI GGTNACC 1 cut(s) 947
BstSFI CTRYAG 3 cut(s) 108, 581, 984
BstV1I GCAGC 7 cut(s) 238, 552, 894, 998, 1070, 1075, 1078
BstV2I GAAGAC 1 cut(s) 569
BtsCI GGATG 6 cut(s) 301, 388, 392, 515, 757, 811
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 3 cut(s) 274, 648, 979
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 1071
Cfr13I GGNCC 1 cut(s) 684
CseI GACGC 1 cut(s) 1137
Csp6I GTAC 2 cut(s) 162, 771
CviAII CATG 5 cut(s) 365, 436, 479, 838, 914
CviQI GTAC 2 cut(s) 162, 771
DdeI CTNAG 2 cut(s) 247, 1095
DpnI GATC 3 cut(s) 216, 305, 924
DpnII GATC 3 cut(s) 214, 303, 922
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 2 cut(s) 75, 628
Eco130I CCWWGG 2 cut(s) 499, 687
Eco24I GRGCYC 3 cut(s) 77, 630, 937
Eco47I GGWCC 1 cut(s) 684
Eco47III AGCGCT 1 cut(s) 1070
Eco53kI GAGCTC 2 cut(s) 75, 628
Eco57I CTGAAG 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 947
EcoICRI GAGCTC 2 cut(s) 75, 628
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 684
EcoO65I GGTNACC 1 cut(s) 947
EcoT14I CCWWGG 2 cut(s) 499, 687
EcoT22I ATGCAT 2 cut(s) 811, 919
EcoT38I GRGCYC 3 cut(s) 77, 630, 937
ErhI CCWWGG 2 cut(s) 499, 687
FaeI CATG 5 cut(s) 368, 439, 482, 841, 917
FatI CATG 5 cut(s) 364, 435, 478, 837, 913
FauNDI CATATG 2 cut(s) 100, 919
FblI GTMKAC 2 cut(s) 111, 1036
Fnu4HI GCNGC 7 cut(s) 252, 566, 908, 987, 1064, 1067, 1084
FokI GGATG 6 cut(s) 308, 379, 395, 522, 744, 818
FriOI GRGCYC 3 cut(s) 77, 630, 937
Fsp4HI GCNGC 7 cut(s) 252, 566, 908, 987, 1064, 1067, 1084
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 1070
GluI GCNGC 7 cut(s) 252, 566, 908, 987, 1064, 1067, 1084
GsuI CTGGAG 1 cut(s) 733
HaeII RGCGCY 1 cut(s) 1072
HapII CCGG 1 cut(s) 380
HgaI GACGC 1 cut(s) 1137
HhaI GCGC 1 cut(s) 1071
Hin1II CATG 5 cut(s) 368, 439, 482, 841, 917
Hin6I GCGC 1 cut(s) 1069
HinP1I GCGC 1 cut(s) 1069
HinfI GANTC 3 cut(s) 104, 376, 962
HpaII CCGG 1 cut(s) 380
HphI GGTGA 2 cut(s) 77, 941
Hpy166II GTNNAC 3 cut(s) 112, 471, 1037
Hpy188I TCNGA 3 cut(s) 214, 705, 1098
Hpy188III TCNNGA 2 cut(s) 380, 406
Hpy8I GTNNAC 3 cut(s) 112, 471, 1037
HpyAV CCTTC 2 cut(s) 11, 1120
HpyCH4III ACNGT 4 cut(s) 83, 116, 161, 493
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 8 cut(s) 568, 583, 809, 917, 977, 986, 1063, 1086
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 605, 983
HpyF3I CTNAG 2 cut(s) 247, 1095
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 5 cut(s) 368, 439, 482, 841, 917
HspAI GCGC 1 cut(s) 1069
Kpn2I TCCGGA 1 cut(s) 379
Kzo9I GATC 3 cut(s) 214, 303, 922
LmnI GCTCC 2 cut(s) 393, 625
Lsp1109I GCAGC 7 cut(s) 238, 552, 894, 998, 1070, 1075, 1078
LweI GCATC 5 cut(s) 198, 399, 451, 766, 796
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 5 cut(s) 83, 257, 544, 947, 1138
MalI GATC 3 cut(s) 216, 305, 924
MboI GATC 3 cut(s) 214, 303, 922
MboII GAAGA 5 cut(s) 212, 569, 821, 871, 1082
MfeI CAATTG 1 cut(s) 953
MhlI GDGCHC 4 cut(s) 77, 390, 630, 937
MluCI AATT 4 cut(s) 531, 570, 825, 953
MmeI TCCRAC 4 cut(s) 170, 348, 658, 865
Mph1103I ATGCAT 2 cut(s) 811, 919
MroI TCCGGA 1 cut(s) 379
MseI TTAA 2 cut(s) 129, 1153
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 380
MunI CAATTG 1 cut(s) 953
Mva1269I GAATGC 1 cut(s) 1086
MwoI GCNNNNNNNGC 3 cut(s) 195, 605, 983
NdeI CATATG 2 cut(s) 100, 919
NdeII GATC 3 cut(s) 214, 303, 922
NlaIII CATG 5 cut(s) 368, 439, 482, 841, 917
NlaIV GGNNCC 2 cut(s) 685, 1131
NmuCI GTSAC 2 cut(s) 83, 947
NsiI ATGCAT 2 cut(s) 811, 919
NspI RCATGY 2 cut(s) 841, 917
PciI ACATGT 1 cut(s) 837
PctI GAATGC 1 cut(s) 1086
PfeI GAWTC 3 cut(s) 104, 376, 962
PkrI GCNGC 7 cut(s) 253, 567, 909, 988, 1065, 1068, 1085
PpuMI RGGWCCY 1 cut(s) 684
PscI ACATGT 1 cut(s) 837
Psp124BI GAGCTC 2 cut(s) 77, 630
Psp5II RGGWCCY 1 cut(s) 684
PspEI GGTNACC 1 cut(s) 947
PspN4I GGNNCC 2 cut(s) 685, 1131
PspPI GGNCC 1 cut(s) 684
PspPPI RGGWCCY 1 cut(s) 684
PstI CTGCAG 2 cut(s) 585, 988
PstNI CAGNNNCTG 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 2 cut(s) 163, 772
RsaNI GTAC 2 cut(s) 162, 771
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 2 cut(s) 77, 630
SaqAI TTAA 2 cut(s) 129, 1153
SatI GCNGC 7 cut(s) 252, 566, 908, 987, 1064, 1067, 1084
Sau3AI GATC 3 cut(s) 214, 303, 922
Sau96I GGNCC 1 cut(s) 684
SduI GDGCHC 4 cut(s) 77, 390, 630, 937
SfaNI GCATC 5 cut(s) 198, 399, 451, 766, 796
SfcI CTRYAG 3 cut(s) 108, 581, 984
SinI GGWCC 1 cut(s) 684
SmiMI CAYNNNNRTG 1 cut(s) 918
Sse9I AATT 4 cut(s) 531, 570, 825, 953
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 2 cut(s) 77, 630
StyI CCWWGG 2 cut(s) 499, 687
TaaI ACNGT 4 cut(s) 83, 116, 161, 493
TaiI ACGT 1 cut(s) 264
TaqI TCGA 3 cut(s) 192, 267, 743
TasI AATT 4 cut(s) 531, 570, 825, 953
TfiI GAWTC 3 cut(s) 104, 376, 962
Tru1I TTAA 2 cut(s) 129, 1153
Tru9I TTAA 2 cut(s) 129, 1153
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 2 cut(s) 83, 947
TseI GCWGC 7 cut(s) 251, 565, 907, 986, 1063, 1066, 1083
Tsp45I GTSAC 2 cut(s) 83, 947
TspDTI ATGAA 6 cut(s) 212, 353, 540, 722, 954, 1093
TspGWI ACGGA 2 cut(s) 388, 869
TspRI CASTG 1 cut(s) 642
VpaK11BI GGWCC 1 cut(s) 684
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 2 cut(s) 570, 825
XceI RCATGY 2 cut(s) 841, 917
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XmiI GTMKAC 2 cut(s) 111, 1036
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 2 cut(s) 811, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.