Rorug05G0144700

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000420
Physical Location & Seq
Forward (+)
13415449 .. 13419527
4079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0144700.1

Sequence Viewer

Length: 2229 bp
ATGGAGGTGTTGATCCCAGCTGCTTTCTCAGTTCTGTTCATCATAATTGGTACTTTAGGAGGCTACTTCTTCGGAAGAGCCAGAGGTCGAAAAGATCGAATCGCAGTACTCTCCGATCAGCCACAACCTGTAACTTCCGTGGTGGACCGGCCCAAAAACGATGTGCAACCACCACCAGTCACCGCCATGGTTTCCCAACCTAAAGACGAGGCCACCATGGAGTCCATTATCCCCAAAAGAATCAAACTTTTCGAGTCCATCCAGGCCCAACAAAAGGCCCACATTCAGTCTCTTCCCCCGGAATCCATCAAGATTACATTGCGGGATGGGCAGGTGATGGAGGGGAAGAAGTGGATAACTTCCCCTTTGGAAATTGCTGAGGAGATTTCGAAGAGTTTGGCTTCGAAAGCTTTGATTGCTGAGGTCAGTGGGACTCTATGGGACATGGCAAGGCCTTTGGAGCGTGACTGTGAGCTTAAGATATTCACATTTGAAGACAACAAAGGCCGTGACACCTTCTGGCACTCTAGTGCTCATATTCTTGGACAGGCACTTGAGGCCAAGTATGGATGCAAGCTCTGTATTGGTCCCTGCACAACAAAAGAAGAGGGGTTCTACTATGATGCATACTATGGCAGTTTGGGCTTGAATGATGAGCACTTAAAGAAAATTGAATCAGAGGTAGAGAAGGCTGTTAAGGCCAAACAGTGCTTTGAGCGCATTGAAGTATCAATGGAACAGGCCCTCGAGATTTTCTCTGATAACAAATTCAAGATTGAGATCATCAATGAGCTTCCTATAGATAAGGCTATAACTGTATACAGATGTGGCAACTTGGTGGACTTGTGCCGTGGACCTCATATCCCAAATACATCCTTTGTCAAAGCATTTAGATGTTTGAAGGCTTCTTCAGCCTACTGGAGGGGAAATAAAGATCGCGAAAGTCTGCAGCGAGTTTATGGAATATCATATCCGGATAAAAAACTTTTGCAGGCATATATCAAGCAGCAGGAAGAAGCAAAAAAATATGACCATAGGCTGTTGGGTAAATCACAGGAGCTCATATTTTGTCACCCATATAGCCCGGGAAGTTGGTTCTTCACCCCAAACGGAGCTCGGATTTATAAGAAATTAATGCAGTTCATGGAAAATGAATATTTGGAAAGAGGATATCAGGAGGTTATAACACCAAACATATTCAAAATGGATTTGTTTGAAAAATCTAAGCATGCAGGACACTACAAACAGAATATGTTTCTTTTAGAGATTGAGAAAGAGGAATATGGTTTGAAGCCAATGAACTGTCCTGGTCACTGTGAAGAGTTTCGACATAGGCCTCGTTCTTATAGAGAACTTCCTCTTCGGATGGCTGAATTTGGGGTGCTGCATCGAAATGAGGCCAGTGGTGCACTAGATGGATTGACTCGTGTCAGGAGATTCGTGCAGGATGATGCTCATATATTTTGTAGGGAGTCCCAACTGAAAGATGAACTCAAGGGTGTCCTCGACTTCATCAAGTATACCTATGACATCTTTGGTCTCTCTTTTGATGTGGAGCTATCAACAAGGCCAGAAAGTTACCATGGAGAACGAGCAACATGGGATAAAGCCGAGGCAATTCTTACAGAAGCACTAAATGAGTTTGGCAAGCCTTGGCAGATAAATGAAGGGGATGGGGCATTTTATGGACCAAAGATAGATTTCGGTGTGTGTAATGCTTTGAAGAAAAAATTTCAGTGTGCAACAATACAGCTTGATTTTCAGCTCCCTGATTATGAGCAGTTCGACCTACATTACAATTCAGAGGGTAAAGAAGGCAAGAGGGAGAGGCCTGTTATGATACACAGAGCTGTATTCGGCTCCTTTGAGCGTTTCTTTGGTATACTTTTGGAGCACTACAAAGGAAAATGGCCCTTCTGGCTTAGTCCACGTCAGGCAATTGTTTGCCCCGTCTCAGAGAAATCCGAGGCTTATGCTCTACAGGTTCAGGAACGGATTCGTCGCGCTGGTTATCATATTGATGTTGACACAAGTGATAGATCCGTGAGTAAAAAGGTGCGAGAAGCTCAGGTGGCACAATACAACTACGTTCTAGTTGTTGGTGAGAAGGAAGCCAAAATTGACCAGGTGAGCTTACGGGCTAGAGATACAGAAGATGAAGATGTCACAGTAATGAGCATTGATGATCTTCTCCAATTCTTCAAAGACGAAGTTGAAGCTTTCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

742

Amino Acids

85.54

Weight (kDa)

6.31

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TGS PF02824 103 - 163 2.7e-15 TGS domain
tRNA_SAD PF07973 271 - 320 4.1e-14 Threonyl and Alanyl tRNA synthetase second additional domain
tRNA-synt_2b PF00587 420 - 633 3.6e-43 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon PF03129 645 - 736 4.5e-18 Anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1125, 1184
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AccI GTMKAC 3 cut(s) 819, 1520, 1882
AccII CGCG 2 cut(s) 939, 2004
AccIII TCCGGA 1 cut(s) 973
AciI CCGC 2 cut(s) 183, 322
AclWI GGATC 2 cut(s) 7, 2034
AcsI RAATTY 3 cut(s) 767, 1373, 1730
AcuI CTGAAG 1 cut(s) 894
AfaI GTAC 2 cut(s) 52, 108
AfiI CCNNNNNNNGG 2 cut(s) 274, 921
AflII CTTAAG 1 cut(s) 476
AjiI CACGTC 1 cut(s) 1931
AjnI CCWGG 3 cut(s) 261, 1306, 2124
AleI CACNNNNGTG 1 cut(s) 528
Alw21I GWGCWC 6 cut(s) 535, 660, 1062, 1117, 1411, 1896
Alw26I GTCTC 3 cut(s) 294, 1544, 1957
Alw44I GTGCAC 1 cut(s) 1407
AlwI GGATC 2 cut(s) 7, 2034
Ama87I CYCGRG 2 cut(s) 746, 1084
Aor13HI TCCGGA 1 cut(s) 973
ApaLI GTGCAC 1 cut(s) 1407
ApeKI GCWGC 4 cut(s) 20, 949, 1006, 1384
ApoI RAATTY 3 cut(s) 767, 1373, 1730
AseI ATTAAT 1 cut(s) 1133
Asp700I GAANNNNTTC 2 cut(s) 1323, 1995
AspLEI GCGC 2 cut(s) 720, 2006
AspS9I GGNCC 9 cut(s) 145, 150, 265, 277, 587, 742, 854, 1688, 1911
AsuC2I CCSGG 3 cut(s) 299, 1085, 1086
AsuHPI GGTGA 6 cut(s) 172, 346, 1064, 1093, 2114, 2140
AsuII TTCGAA 2 cut(s) 389, 404
AvaI CYCGRG 2 cut(s) 746, 1084
AvaII GGWCC 4 cut(s) 145, 587, 854, 1688
BaeGI GKGCMC 1 cut(s) 1411
BanII GRGCYC 2 cut(s) 1062, 1117
BauI CACGAG 1 cut(s) 1425
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 6 cut(s) 535, 660, 1062, 1117, 1411, 1896
BbvCI CCTCAGC 2 cut(s) 378, 420
BbvI GCAGC 4 cut(s) 7, 961, 1018, 1371
BccI CCATC 7 cut(s) 266, 314, 320, 331, 1360, 1409, 1667
BceAI ACGGC 2 cut(s) 492, 834
BcgI CGANNNNNNTGC 2 cut(s) 1955, 1989
BciT130I CCWGG 3 cut(s) 263, 1308, 2126
BcnI CCSGG 3 cut(s) 299, 1085, 1086
BcoDI GTCTC 3 cut(s) 294, 1544, 1957
BfaI CTAG 4 cut(s) 528, 1412, 2093, 2142
BfmI CTRYAG 3 cut(s) 798, 947, 1979
BfrI CTTAAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 1918
BisI GCNGC 4 cut(s) 21, 950, 1007, 1385
BlsI GCNGC 4 cut(s) 22, 951, 1008, 1386
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 6 cut(s) 263, 299, 1085, 1086, 1308, 2126
Bme18I GGWCC 4 cut(s) 145, 587, 854, 1688
BmeT110I CYCGRG 2 cut(s) 746, 1084
BmgBI CACGTC 1 cut(s) 1931
BmgT120I GGNCC 9 cut(s) 145, 150, 265, 277, 587, 742, 854, 1688, 1911
BmiI GGNNCC 2 cut(s) 589, 1861
BmrFI CCNGG 6 cut(s) 263, 299, 1085, 1086, 1308, 2126
BmsI GCATC 4 cut(s) 560, 613, 1396, 1441
BoxI GACNNNNGTC 1 cut(s) 1427
BpiI GAAGAC 1 cut(s) 501
BplI GAGNNNNNCTC 2 cut(s) 740, 772
BpmI CTGGAG 1 cut(s) 940
Bpu10I CCTNAGC 3 cut(s) 378, 420, 2067
Bpu14I TTCGAA 2 cut(s) 389, 404
BpuEI CTTGAG 2 cut(s) 575, 1478
BpuMI CCSGG 3 cut(s) 299, 1085, 1086
BsaBI GATNNNNATC 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 1544
BsaWI WCCGGW 1 cut(s) 973
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 921
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 3 cut(s) 176, 923, 1401
Bse3DI GCAATG 1 cut(s) 317
Bse8I GATNNNNATC 1 cut(s) 779
BseAI TCCGGA 1 cut(s) 973
BseBI CCWGG 3 cut(s) 263, 1308, 2126
BseGI GGATG 7 cut(s) 258, 331, 575, 872, 1371, 1453, 1678
BseJI GATNNNNATC 1 cut(s) 779
BseLI CCNNNNNNNGG 2 cut(s) 274, 921
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 5 cut(s) 42, 369, 411, 1968, 2081
BseNI ACTGG 3 cut(s) 176, 923, 1401
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 1411
BseXI GCAGC 4 cut(s) 7, 961, 1018, 1371
BseYI CCCAGC 1 cut(s) 16
BsgI GTGCAG 2 cut(s) 577, 1463
Bsh1236I CGCG 2 cut(s) 939, 2004
BsiHKAI GWGCWC 6 cut(s) 535, 660, 1062, 1117, 1411, 1896
BsiHKCI CYCGRG 2 cut(s) 746, 1084
BsiSI CCGG 4 cut(s) 148, 299, 974, 1085
BslFI GGGAC 4 cut(s) 445, 455, 573, 1459
BslI CCNNNNNNNGG 2 cut(s) 274, 921
BsmAI GTCTC 3 cut(s) 294, 1544, 1957
BsmBI CGTCTC 1 cut(s) 1957
BsmFI GGGAC 4 cut(s) 445, 455, 573, 1459
Bso31I GGTCTC 1 cut(s) 1544
BsoBI CYCGRG 2 cut(s) 746, 1084
Bsp119I TTCGAA 2 cut(s) 389, 404
Bsp1286I GDGCHC 6 cut(s) 535, 660, 1062, 1117, 1411, 1896
Bsp13I TCCGGA 1 cut(s) 973
Bsp143I GATC 7 cut(s) 12, 94, 115, 780, 934, 2039, 2185
Bsp19I CCATGG 3 cut(s) 186, 216, 1582
Bsp68I TCGCGA 1 cut(s) 939
BspACI CCGC 2 cut(s) 183, 322
BspCNI CTCAG 5 cut(s) 41, 370, 412, 1967, 2080
BspEI TCCGGA 1 cut(s) 973
BspFNI CGCG 2 cut(s) 939, 2004
BspLI GGNNCC 2 cut(s) 589, 1861
BspMAI CTGCAG 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 2 cut(s) 7, 2034
BspQI GCTCTTC 1 cut(s) 70
BspT104I TTCGAA 2 cut(s) 389, 404
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 1544
BsrDI GCAATG 1 cut(s) 317
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 3 cut(s) 176, 923, 1401
BssAI RCCGGY 1 cut(s) 147
BssMI GATC 7 cut(s) 12, 94, 115, 780, 934, 2039, 2185
BssNAI GTATAC 3 cut(s) 820, 1521, 1883
BssSI CACGAG 1 cut(s) 1425
BssT1I CCWWGG 4 cut(s) 186, 216, 1582, 1652
Bst1107I GTATAC 3 cut(s) 820, 1521, 1883
Bst2BI CACGAG 1 cut(s) 1425
Bst2UI CCWGG 3 cut(s) 263, 1308, 2126
Bst4CI ACNGT 6 cut(s) 470, 708, 817, 1304, 1316, 2170
Bst6I CTCTTC 6 cut(s) 70, 297, 386, 600, 1314, 1365
BstAFI CTTAAG 1 cut(s) 476
BstBI TTCGAA 2 cut(s) 389, 404
BstC8I GCNNGC 4 cut(s) 575, 993, 1230, 1649
BstDEI CTNAG 7 cut(s) 28, 378, 420, 1224, 1922, 1954, 2067
BstDSI CCRYGG 5 cut(s) 138, 186, 216, 850, 1582
BstENI CCTNNNNNAGG 1 cut(s) 919
BstF5I GGATG 7 cut(s) 258, 331, 575, 872, 1371, 1453, 1678
BstFNI CGCG 2 cut(s) 939, 2004
BstHHI GCGC 2 cut(s) 720, 2006
BstKTI GATC 7 cut(s) 15, 97, 118, 783, 937, 2042, 2188
BstMAI GTCTC 3 cut(s) 294, 1544, 1957
BstMBI GATC 7 cut(s) 12, 94, 115, 780, 934, 2039, 2185
BstNI CCWGG 3 cut(s) 263, 1308, 2126
BstNSI RCATGY 1 cut(s) 1232
BstPAI GACNNNNGTC 1 cut(s) 1427
BstSCI CCNGG 6 cut(s) 261, 297, 1083, 1084, 1306, 2124
BstSFI CTRYAG 3 cut(s) 798, 947, 1979
BstSLI GKGCMC 1 cut(s) 1411
BstUI CGCG 2 cut(s) 939, 2004
BstV1I GCAGC 4 cut(s) 7, 961, 1018, 1371
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 2039
BstYI RGATCY 1 cut(s) 2039
BstZ17I GTATAC 3 cut(s) 820, 1521, 1883
BtgI CCRYGG 5 cut(s) 138, 186, 216, 850, 1582
BtrI CACGTC 1 cut(s) 1931
BtsCI GGATG 7 cut(s) 258, 331, 575, 872, 1371, 1453, 1678
BtsIMutI CAGTG 5 cut(s) 433, 713, 1312, 1408, 1742
BtuMI TCGCGA 1 cut(s) 939
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 4 cut(s) 575, 993, 1230, 1649
CfoI GCGC 2 cut(s) 720, 2006
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 9 cut(s) 145, 150, 265, 277, 587, 742, 854, 1688, 1911
Cfr9I CCCGGG 1 cut(s) 1084
CsiI ACCWGGT 1 cut(s) 2124
Csp6I GTAC 2 cut(s) 51, 107
CviAII CATG 7 cut(s) 187, 217, 445, 1144, 1229, 1583, 1599
CviQI GTAC 2 cut(s) 51, 107
DdeI CTNAG 7 cut(s) 28, 378, 420, 1224, 1922, 1954, 2067
DpnI GATC 7 cut(s) 14, 96, 117, 782, 936, 2041, 2187
DpnII GATC 7 cut(s) 12, 94, 115, 780, 934, 2039, 2185
Eam1104I CTCTTC 6 cut(s) 70, 297, 386, 600, 1314, 1365
EarI CTCTTC 6 cut(s) 70, 297, 386, 600, 1314, 1365
Ecl136II GAGCTC 2 cut(s) 1060, 1115
Eco130I CCWWGG 4 cut(s) 186, 216, 1582, 1652
Eco147I AGGCCT 3 cut(s) 454, 1336, 1831
Eco24I GRGCYC 2 cut(s) 1062, 1117
Eco31I GGTCTC 1 cut(s) 1544
Eco32I GATATC 1 cut(s) 1172
Eco47I GGWCC 4 cut(s) 145, 587, 854, 1688
Eco53kI GAGCTC 2 cut(s) 1060, 1115
Eco57I CTGAAG 1 cut(s) 894
Eco88I CYCGRG 2 cut(s) 746, 1084
EcoICRI GAGCTC 2 cut(s) 1060, 1115
EcoNI CCTNNNNNAGG 1 cut(s) 919
EcoO109I RGGNCCY 1 cut(s) 742
EcoRII CCWGG 3 cut(s) 261, 1306, 2124
EcoRV GATATC 1 cut(s) 1172
EcoT14I CCWWGG 4 cut(s) 186, 216, 1582, 1652
EcoT22I ATGCAT 1 cut(s) 628
EcoT38I GRGCYC 2 cut(s) 1062, 1117
ErhI CCWWGG 4 cut(s) 186, 216, 1582, 1652
Esp3I CGTCTC 1 cut(s) 1957
FaeI CATG 7 cut(s) 190, 220, 448, 1147, 1232, 1586, 1602
FaqI GGGAC 4 cut(s) 445, 455, 573, 1459
FatI CATG 7 cut(s) 186, 216, 444, 1143, 1228, 1582, 1598
FauI CCCGC 1 cut(s) 315
FblI GTMKAC 3 cut(s) 819, 1520, 1882
Fnu4HI GCNGC 4 cut(s) 21, 950, 1007, 1385
FokI GGATG 7 cut(s) 245, 338, 582, 859, 1378, 1460, 1685
FriOI GRGCYC 2 cut(s) 1062, 1117
Fsp4HI GCNGC 4 cut(s) 21, 950, 1007, 1385
FspBI CTAG 4 cut(s) 528, 1412, 2093, 2142
GlaI GCGC 2 cut(s) 719, 2005
GluI GCNGC 4 cut(s) 21, 950, 1007, 1385
GsaI CCCAGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 940
HapII CCGG 4 cut(s) 148, 299, 974, 1085
HhaI GCGC 2 cut(s) 720, 2006
Hin1II CATG 7 cut(s) 190, 220, 448, 1147, 1232, 1586, 1602
Hin6I GCGC 2 cut(s) 718, 2004
HinP1I GCGC 2 cut(s) 718, 2004
HincII GTYRAC 1 cut(s) 2026
HindII GTYRAC 1 cut(s) 2026
HindIII AAGCTT 2 cut(s) 408, 2217
HpaII CCGG 4 cut(s) 148, 299, 974, 1085
HphI GGTGA 6 cut(s) 172, 346, 1064, 1093, 2114, 2140
Hpy166II GTNNAC 9 cut(s) 145, 820, 841, 854, 1409, 1521, 1883, 1928, 2026
Hpy188I TCNGA 9 cut(s) 74, 115, 679, 760, 1119, 1365, 1804, 1957, 1966
Hpy188III TCNNGA 8 cut(s) 310, 748, 772, 938, 974, 1175, 1432, 1988
Hpy8I GTNNAC 9 cut(s) 145, 820, 841, 854, 1409, 1521, 1883, 1928, 2026
Hpy99I CGWCG 1 cut(s) 2004
HpyAV CCTTC 7 cut(s) 526, 682, 895, 1661, 1808, 1924, 2101
HpyCH4III ACNGT 6 cut(s) 470, 708, 817, 1304, 1316, 2170
HpyCH4IV ACGT 2 cut(s) 1930, 2088
HpyF3I CTNAG 7 cut(s) 28, 378, 420, 1224, 1922, 1954, 2067
HpySE526I ACGT 2 cut(s) 1930, 2088
Hsp92II CATG 7 cut(s) 190, 220, 448, 1147, 1232, 1586, 1602
HspAI GCGC 2 cut(s) 718, 2004
Kpn2I TCCGGA 1 cut(s) 973
Kzo9I GATC 7 cut(s) 12, 94, 115, 780, 934, 2039, 2185
LguI GCTCTTC 1 cut(s) 70
LmnI GCTCC 7 cut(s) 460, 1057, 1112, 1555, 1770, 1865, 1891
Lsp1109I GCAGC 4 cut(s) 7, 961, 1018, 1371
LweI GCATC 4 cut(s) 560, 613, 1396, 1441
MabI ACCWGGT 1 cut(s) 2124
MaeI CTAG 4 cut(s) 528, 1412, 2093, 2142
MaeII ACGT 2 cut(s) 1930, 2088
MaeIII GTNAC 8 cut(s) 130, 178, 464, 509, 1070, 1310, 1577, 2164
MalI GATC 7 cut(s) 14, 96, 117, 782, 936, 2041, 2187
MboI GATC 7 cut(s) 12, 94, 115, 780, 934, 2039, 2185
MfeI CAATTG 1 cut(s) 1938
MflI RGATCY 1 cut(s) 2039
MhlI GDGCHC 6 cut(s) 535, 660, 1062, 1117, 1411, 1896
MlyI GAGTC 5 cut(s) 230, 263, 427, 1417, 1481
Mph1103I ATGCAT 1 cut(s) 628
MroI TCCGGA 1 cut(s) 973
MroXI GAANNNNTTC 2 cut(s) 1323, 1995
MseI TTAA 4 cut(s) 477, 662, 696, 1133
MslI CAYNNNNRTG 6 cut(s) 185, 528, 892, 1392, 2019, 2171
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 4 cut(s) 148, 299, 974, 1085
MspR9I CCNGG 6 cut(s) 263, 299, 1085, 1086, 1308, 2126
MunI CAATTG 1 cut(s) 1938
MvaI CCWGG 3 cut(s) 263, 1308, 2126
MvnI CGCG 2 cut(s) 939, 2004
NciI CCSGG 3 cut(s) 299, 1085, 1086
NcoI CCATGG 3 cut(s) 186, 216, 1582
NdeII GATC 7 cut(s) 12, 94, 115, 780, 934, 2039, 2185
NlaIII CATG 7 cut(s) 190, 220, 448, 1147, 1232, 1586, 1602
NlaIV GGNNCC 2 cut(s) 589, 1861
NmeAIII GCCGAG 1 cut(s) 1636
NmuCI GTSAC 6 cut(s) 178, 464, 509, 1070, 1310, 2164
NruI TCGCGA 1 cut(s) 939
NsiI ATGCAT 1 cut(s) 628
NspI RCATGY 1 cut(s) 1232
NspV TTCGAA 2 cut(s) 389, 404
OliI CACNNNNGTG 1 cut(s) 528
PaeI GCATGC 1 cut(s) 1232
PaeR7I CTCGAG 1 cut(s) 746
PaqCI CACCTGC 1 cut(s) 322
PceI AGGCCT 3 cut(s) 454, 1336, 1831
PciSI GCTCTTC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PdmI GAANNNNTTC 2 cut(s) 1323, 1995
PfeI GAWTC 6 cut(s) 99, 240, 302, 674, 1437, 1996
PkrI GCNGC 4 cut(s) 22, 951, 1008, 1386
PleI GAGTC 5 cut(s) 229, 262, 427, 1417, 1480
PpsI GAGTC 5 cut(s) 229, 262, 427, 1417, 1480
PshAI GACNNNNGTC 1 cut(s) 1427
PshBI ATTAAT 1 cut(s) 1133
PsiI TTATAA 2 cut(s) 1125, 1184
Psp124BI GAGCTC 2 cut(s) 1062, 1117
Psp6I CCWGG 3 cut(s) 261, 1306, 2124
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 3 cut(s) 261, 1306, 2124
PspN4I GGNNCC 2 cut(s) 589, 1861
PspPI GGNCC 9 cut(s) 145, 150, 265, 277, 587, 742, 854, 1688, 1911
PstI CTGCAG 1 cut(s) 951
PsuI RGATCY 1 cut(s) 2039
PvuII CAGCTG 1 cut(s) 20
RruI TCGCGA 1 cut(s) 939
RsaI GTAC 2 cut(s) 52, 108
RsaNI GTAC 2 cut(s) 51, 107
RseI CAYNNNNRTG 6 cut(s) 185, 528, 892, 1392, 2019, 2171
SacI GAGCTC 2 cut(s) 1062, 1117
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 4 cut(s) 477, 662, 696, 1133
SatI GCNGC 4 cut(s) 21, 950, 1007, 1385
Sau3AI GATC 7 cut(s) 12, 94, 115, 780, 934, 2039, 2185
Sau96I GGNCC 9 cut(s) 145, 150, 265, 277, 587, 742, 854, 1688, 1911
ScaI AGTACT 1 cut(s) 108
SchI GAGTC 5 cut(s) 230, 263, 427, 1417, 1481
ScrFI CCNGG 6 cut(s) 263, 299, 1085, 1086, 1308, 2126
SduI GDGCHC 6 cut(s) 535, 660, 1062, 1117, 1411, 1896
SexAI ACCWGGT 1 cut(s) 2124
SfaNI GCATC 4 cut(s) 560, 613, 1396, 1441
SfcI CTRYAG 3 cut(s) 798, 947, 1979
Sfr274I CTCGAG 1 cut(s) 746
SfuI TTCGAA 2 cut(s) 389, 404
SinI GGWCC 4 cut(s) 145, 587, 854, 1688
SlaI CTCGAG 1 cut(s) 746
SmaI CCCGGG 1 cut(s) 1086
SmiMI CAYNNNNRTG 6 cut(s) 185, 528, 892, 1392, 2019, 2171
SmlI CTYRAG 4 cut(s) 476, 554, 746, 1493
SmoI CTYRAG 4 cut(s) 476, 554, 746, 1493
SphI GCATGC 1 cut(s) 1232
SseBI AGGCCT 3 cut(s) 454, 1336, 1831
SsiI CCGC 2 cut(s) 183, 322
SspI AATATT 1 cut(s) 1157
SspMI CTAG 4 cut(s) 528, 1412, 2093, 2142
SstI GAGCTC 2 cut(s) 1062, 1117
StuI AGGCCT 3 cut(s) 454, 1336, 1831
StyD4I CCNGG 6 cut(s) 261, 297, 1083, 1084, 1306, 2124
StyI CCWWGG 4 cut(s) 186, 216, 1582, 1652
TaaI ACNGT 6 cut(s) 470, 708, 817, 1304, 1316, 2170
TaiI ACGT 2 cut(s) 1933, 2091
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 6 cut(s) 99, 240, 302, 674, 1437, 1996
Tru1I TTAA 4 cut(s) 477, 662, 696, 1133
Tru9I TTAA 4 cut(s) 477, 662, 696, 1133
TscAI CASTG 5 cut(s) 433, 713, 1319, 1408, 1742
TseFI GTSAC 6 cut(s) 178, 464, 509, 1070, 1310, 2164
TseI GCWGC 4 cut(s) 20, 949, 1006, 1384
Tsp45I GTSAC 6 cut(s) 178, 464, 509, 1070, 1310, 2164
TspDTI ATGAA 8 cut(s) 28, 1132, 1167, 1313, 1501, 1503, 1680, 2172
TspGWI ACGGA 4 cut(s) 127, 1125, 2008, 2032
TspMI CCCGGG 1 cut(s) 1084
TspRI CASTG 5 cut(s) 433, 713, 1319, 1408, 1742
Vha464I CTTAAG 1 cut(s) 476
VneI GTGCAC 1 cut(s) 1407
VpaK11BI GGWCC 4 cut(s) 145, 587, 854, 1688
VspI ATTAAT 1 cut(s) 1133
XagI CCTNNNNNAGG 1 cut(s) 919
XapI RAATTY 3 cut(s) 767, 1373, 1730
XceI RCATGY 1 cut(s) 1232
XhoI CTCGAG 1 cut(s) 746
XmaI CCCGGG 1 cut(s) 1084
XmiI GTMKAC 3 cut(s) 819, 1520, 1882
XmnI GAANNNNTTC 2 cut(s) 1323, 1995
XspI CTAG 4 cut(s) 528, 1412, 2093, 2142
ZrmI AGTACT 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.