Rorug05G0142900

Protein of unknown function (DUF2921)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
13125288 .. 13125704
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0142900.1

Sequence Viewer

Length: 417 bp
ATGCTCTTGTTGGGTGAATATGACGGGATCGGTTCTGTGGAGGCAGTCCCTTTGTGGAGTGTGGAGACATGGGTGGCAGTAACAGATTTGCCGGTAGCCCTTCGGAACAAGGCCGCCCTAACTCTCATCGGATCAGTGATTGGGCAAGTGATTCGGTTTGATCAAACGGCTCTCCGTCTGAAGGAGGAGGAGCAGAGAATCCGCTTGATTTTGGACACTCGTCCTCGAGTACGTACATGGATGTTGTATGAGTTCTCTCCTACGATTGAATCGGAGATCATTTTGATTTATGAGAAGGTGAAAGGGTTTTGTAGAGATTGTGGACTCTTTGAACATGATGTGTTGGGATGTGATGGTTTTCTCATGAAAGAAAAGGAAGAGCTGATGCAGAAGCCGCCGGAGGTGGTGATGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.77

Weight (kDa)

4.87

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 114, 202, 395
AclWI GGATC 2 cut(s) 35, 139
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 2 cut(s) 231, 235
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 2 cut(s) 269, 332
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 35, 139
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 26, 310
AvaI CYCGRG 1 cut(s) 225
BccI CCATC 2 cut(s) 347, 403
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 2 cut(s) 114, 395
BlsI GCNGC 2 cut(s) 115, 396
BmeT110I CYCGRG 1 cut(s) 225
BmsI GCATC 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 91
BseGI GGATG 2 cut(s) 246, 353
BseLI CCNNNNNNNGG 1 cut(s) 181
BseRI GAGGAG 2 cut(s) 200, 203
BshFI GGCC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 2 cut(s) 92, 398
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 225
Bsp143I GATC 4 cut(s) 27, 131, 160, 276
BspACI CCGC 3 cut(s) 114, 202, 395
BspANI GGCC 1 cut(s) 113
BspHI TCATGA 1 cut(s) 363
BspPI GGATC 2 cut(s) 35, 139
BspQI GCTCTTC 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 4 cut(s) 27, 131, 160, 276
Bst6I CTCTTC 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 233
BstF5I GGATG 2 cut(s) 246, 353
BstKTI GATC 4 cut(s) 30, 134, 163, 279
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 4 cut(s) 27, 131, 160, 276
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstPAI GACNNNNGTC 1 cut(s) 219
BstSNI TACGTA 1 cut(s) 233
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 2 cut(s) 246, 353
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 91
Csp6I GTAC 2 cut(s) 230, 234
CviAII CATG 5 cut(s) 69, 237, 335, 364, 414
CviJI RGCY 5 cut(s) 98, 113, 170, 382, 394
CviKI_1 RGCY 5 cut(s) 98, 113, 170, 382, 394
CviQI GTAC 2 cut(s) 230, 234
DpnI GATC 4 cut(s) 29, 133, 162, 278
DpnII GATC 4 cut(s) 27, 131, 160, 276
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco105I TACGTA 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 225
FaeI CATG 5 cut(s) 72, 240, 338, 367, 417
FaiI YATR 8 cut(s) 21, 70, 238, 249, 291, 336, 365, 415
FaqI GGGAC 1 cut(s) 32
FatI CATG 5 cut(s) 68, 236, 334, 363, 413
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 114, 395
FokI GGATG 2 cut(s) 253, 360
Fsp4HI GCNGC 2 cut(s) 114, 395
GluI GCNGC 2 cut(s) 114, 395
HaeIII GGCC 1 cut(s) 113
HapII CCGG 2 cut(s) 92, 398
Hin1II CATG 5 cut(s) 72, 240, 338, 367, 417
HinfI GANTC 4 cut(s) 151, 198, 269, 324
HpaII CCGG 2 cut(s) 92, 398
HphI GGTGA 2 cut(s) 26, 310
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 4 cut(s) 105, 131, 180, 274
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 3 cut(s) 110, 175, 289
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 5 cut(s) 72, 240, 338, 367, 417
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 27, 131, 160, 276
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 105, 411
LweI GCATC 1 cut(s) 375
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 29, 133, 162, 278
MboI GATC 4 cut(s) 27, 131, 160, 276
MboII GAAGA 1 cut(s) 389
MlyI GAGTC 1 cut(s) 318
MnlI CCTC 5 cut(s) 34, 178, 181, 234, 394
MspI CCGG 2 cut(s) 92, 398
MwoI GCNNNNNNNGC 1 cut(s) 394
NdeII GATC 4 cut(s) 27, 131, 160, 276
NlaIII CATG 5 cut(s) 72, 240, 338, 367, 417
PaeR7I CTCGAG 1 cut(s) 225
PagI TCATGA 1 cut(s) 363
PciSI GCTCTTC 1 cut(s) 372
PfeI GAWTC 3 cut(s) 151, 198, 269
PkrI GCNGC 2 cut(s) 115, 396
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Ppu21I YACGTR 1 cut(s) 233
PshAI GACNNNNGTC 1 cut(s) 219
PspXI VCTCGAGB 1 cut(s) 225
RsaI GTAC 2 cut(s) 231, 235
RsaNI GTAC 2 cut(s) 230, 234
SapI GCTCTTC 1 cut(s) 372
SatI GCNGC 2 cut(s) 114, 395
Sau3AI GATC 4 cut(s) 27, 131, 160, 276
SchI GAGTC 1 cut(s) 318
SetI ASST 4 cut(s) 235, 300, 384, 405
SfaNI GCATC 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
SnaBI TACGTA 1 cut(s) 233
SsiI CCGC 3 cut(s) 114, 202, 395
TaiI ACGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 226
TauI GCSGC 2 cut(s) 116, 397
TfiI GAWTC 3 cut(s) 151, 198, 269
TscAI CASTG 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 141
XhoI CTCGAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.