FvH4_6g20070

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000420
Physical Location & Seq
Forward (+)
13501310 .. 13503330
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20070.t1

Sequence Viewer

Length: 750 bp
ATGTCCAATGTAGTCATGTCGGAGAGGTCCTACTTCAACCATCCCGAACAAAGTTACAAAAAGGGAATTGAATCCATCGTCGCTCGTGAACCTCCCTCCGCCGGCGACGTTGGTGAACTTCCGGGGACCGAGGGTTCCGGTCATGTGGGGTGTGGTAACTTTGAGCCTAGTGTTGCTCTTAAGCTTAATTATCCGAAATGGTCTAGTATTTATGACAGTTTGATTAGTGAGAGCTTAGAGAGTGTTGTTAGTGATAAGGATGATGGTGAGAATTATTTTGATGCTATTATGGTGTTGGCTTTTTCTGTGAAGCATAGTTATGGGTATACATTTGTTGGGGAAGATAGGATGAGTAGTTTTCCGAGTAGTGTTGAGAGTGGAGAGAGTATAGGTTTGAGTAATTTGAATGATTCGAACGGTGGTGTGTGTAGGTTGCTTGGTAACCGTCTCGAGAGATTTGAATTGGTGTATGGGAGTGAGTGTGGTGGGGCTGTGAATTGCAATCCTCTTGGTGGGGATGTTGGATATGTACCGAGCTCGTTGTCTAAAACTTTGGGAGATGACAAGTCTGAACATACTGTTGAGTTCACTGGTGGGAATGATTTCAGAACTTCATGGGATATCAAGGCCACTCCTACTTTCTTCTTCCTCCGAGATGGTCAGCAAGTTGACAAGCTTGTCGGAGCCAACAAGGTAGAGTTGCAAAAGAAGATAGTTGCCATTGTAGATTCAGCCCCATGTAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

250

Amino Acids

26.93

Weight (kDa)

4.81

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 677
AccI GTMKAC 1 cut(s) 326
AciI CCGC 1 cut(s) 99
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 2 cut(s) 101, 512
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 4 cut(s) 37, 71, 406, 461
AloI GAACNNNNNNTCC 2 cut(s) 118, 150
AluBI AGCT 4 cut(s) 184, 234, 537, 676
AluI AGCT 4 cut(s) 184, 234, 537, 676
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 1 cut(s) 627
Asp700I GAANNNNTTC 1 cut(s) 602
AspS9I GGNCC 2 cut(s) 27, 126
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 125, 278
AsuII TTCGAA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 2 cut(s) 27, 126
BanII GRGCYC 1 cut(s) 539
BauI CACGAG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 539
BccI CCATC 4 cut(s) 48, 83, 257, 650
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 2 cut(s) 168, 204
BfrI CTTAAG 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 2 cut(s) 27, 126
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 27, 126
BmiI GGNNCC 3 cut(s) 127, 136, 685
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 122, 129
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 512
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 595
BseDI CCNNGG 2 cut(s) 122, 129
BseGI GGATG 4 cut(s) 40, 265, 354, 523
BseLI CCNNNNNNNGG 2 cut(s) 101, 512
BseNI ACTGG 1 cut(s) 595
BshFI GGCC 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 3 cut(s) 102, 122, 138
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 101, 512
BsmAI GTCTC 1 cut(s) 452
BsmBI CGTCTC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 629
BsoBI CYCGRG 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 539
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 629
BspLI GGNNCC 3 cut(s) 127, 136, 685
BspT104I TTCGAA 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 595
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 122, 129
BssNAI GTATAC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 84
Bst4CI ACNGT 4 cut(s) 218, 419, 446, 580
BstAFI CTTAAG 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 235
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 4 cut(s) 40, 265, 354, 523
BstMAI GTCTC 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 629
BtsCI GGATG 4 cut(s) 40, 265, 354, 523
BtsIMutI CAGTG 1 cut(s) 588
Cac8I GCNNGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 27, 126
Csp6I GTAC 1 cut(s) 530
CviAII CATG 4 cut(s) 16, 143, 615, 738
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 1 cut(s) 235
DrdI GACNNNNNNGTC 1 cut(s) 677
DseDI GACNNNNNNGTC 1 cut(s) 677
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 27, 126
Eco53kI GAGCTC 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 449
Eco91I GGTNACC 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 27
EcoO65I GGTNACC 1 cut(s) 440
EcoRV GATATC 1 cut(s) 622
EcoT38I GRGCYC 1 cut(s) 539
Esp3I CGTCTC 1 cut(s) 452
FaeI CATG 4 cut(s) 19, 146, 618, 741
FaqI GGGAC 1 cut(s) 139
FatI CATG 4 cut(s) 15, 142, 614, 737
FblI GTMKAC 1 cut(s) 326
FokI GGATG 4 cut(s) 27, 272, 361, 530
FriOI GRGCYC 1 cut(s) 539
FspBI CTAG 2 cut(s) 168, 204
HaeIII GGCC 1 cut(s) 629
HapII CCGG 3 cut(s) 102, 122, 138
Hin1II CATG 4 cut(s) 19, 146, 618, 741
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HindIII AAGCTT 2 cut(s) 182, 674
HinfI GANTC 3 cut(s) 71, 410, 728
HpaII CCGG 3 cut(s) 102, 122, 138
HphI GGTGA 2 cut(s) 125, 278
Hpy166II GTNNAC 5 cut(s) 89, 116, 327, 588, 670
Hpy188I TCNGA 7 cut(s) 22, 195, 363, 571, 608, 653, 683
Hpy188III TCNNGA 4 cut(s) 44, 86, 449, 451
Hpy8I GTNNAC 5 cut(s) 89, 116, 327, 588, 670
Hpy99I CGWCG 2 cut(s) 83, 110
HpyCH4III ACNGT 4 cut(s) 218, 419, 446, 580
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 501, 703
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 4 cut(s) 19, 146, 618, 741
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 683
LpnPI CCDG 4 cut(s) 115, 135, 151, 576
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 168, 204
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 53, 155, 440
MboII GAAGA 4 cut(s) 353, 634, 637, 721
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 6 cut(s) 66, 187, 271, 400, 461, 496
MmeI TCCRAC 2 cut(s) 502, 661
MnlI CCTC 6 cut(s) 18, 102, 106, 124, 516, 659
MreI CGCCGGCG 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 602
MseI TTAA 2 cut(s) 180, 186
MslI CAYNNNNRTG 1 cut(s) 318
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 3 cut(s) 102, 122, 138
MspR9I CCNGG 1 cut(s) 123
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 19, 146, 618, 741
NlaIV GGNNCC 3 cut(s) 127, 136, 685
NspV TTCGAA 1 cut(s) 413
PaeR7I CTCGAG 1 cut(s) 449
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 3 cut(s) 71, 410, 728
PpuMI RGGWCCY 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 440
PspN4I GGNNCC 3 cut(s) 127, 136, 685
PspPI GGNCC 2 cut(s) 27, 126
PspPPI RGGWCCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 539
SaqAI TTAA 2 cut(s) 180, 186
Sau96I GGNCC 2 cut(s) 27, 126
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 539
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 449
SfuI TTCGAA 1 cut(s) 413
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 2 cut(s) 27, 126
SlaI CTCGAG 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 179, 449
SmoI CTYRAG 2 cut(s) 179, 449
Sse9I AATT 6 cut(s) 66, 187, 271, 400, 461, 496
SsiI CCGC 1 cut(s) 99
SspMI CTAG 2 cut(s) 168, 204
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 4 cut(s) 218, 419, 446, 580
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 413, 450
TaqII GACCGA 1 cut(s) 143
TasI AATT 6 cut(s) 66, 187, 271, 400, 461, 496
TfiI GAWTC 3 cut(s) 71, 410, 728
Tru1I TTAA 2 cut(s) 180, 186
Tru9I TTAA 2 cut(s) 180, 186
TscAI CASTG 1 cut(s) 595
TspDTI ATGAA 1 cut(s) 603
TspRI CASTG 1 cut(s) 595
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 27, 126
XhoI CTCGAG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 2 cut(s) 168, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.