Rh5DG241300

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000420
Physical Location & Seq
Reverse (-)
27549916 .. 27553291
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG241300.1

Sequence Viewer

Length: 2805 bp
ATGACTATCTTCAGAAAGCCAAAGCTGGTCATATTCTTCTTCTGTGTTTTCACCACCCTTTCTTTGAACTCAATCTCATCCTTTGCTCTACCTAAGAAAATCGCTTATGCTGATAATTGTGCTTCAGTTGTTCCCGAGTCAACCCTGAAAGCGGACAGCAGAGATCATCGCCATGAGTATCTCCATACAGGTTACTACTACACTGGTGGTGACGCTGGCAATGGTGGCCTTAGTCGTAACTCATCCTATGGTTATCATTATCAGCTCCAAAACTCAGTTGAATTCAGTATCTGGAGTTTTGAAGAAACTGATGTACAAGGCTTGTTCAAGCTCCGAGCAAATCTTCAATTTCCAAAGGACAGAACGTATTACTACGTGGGGCCCTCCACAAGTAGTAGTAGCTCCAGGTCTCGATCAATTCATGCAGATGCAAGGTGGTCACTCAACTTTATATTCAACGGGTTCTGGTCAGAATCTTCAGGGAAGCTTTGTATGGTTGGATATGGTAGTTACTCGAAGAAAGGTACTTCACTCAGTTACCCTGCTATCCTTAAGCTCTATAATCTCTTCAATTCCACTAGTATTACAAGTTTGATTACTGGAACCATAGAGTCTTTGATCCCGAGTTCTGATATTGTCAAGGATCCAAGATATTTTGATCCAACCTCTATTTTGATGCTTCCTCGGATGAACTACCAGTACACTTTGGTTTCAAATAACTATACTGATGACACCTCTTCTGGTGACACTGATGATCATGATCCCTCGAGTTCTTTGAAATTAGATAACTTTTGTTCACAACTCTCAACAGTAGTACTAAAGAATGAGTTTGATCTCAGATATTCAAGGAAATGTGTTTCTGCAAGGAATTGTACTCCACTTGCTGGGCTAGATCCTTTGCCTCGACTCGTGTCGTTTAAGGATATTGATTGTAGGGAGAGAAATAGAAGATTGAGAGTTCTGGTGGAGTTCGCAGACAGCAGCAACAAGTGGTTTCAAAGGCCTTTCAATCCCAACACAACTCTGGTTGCGGAAGGCTCATGGGATGCAAAGAAAAATCAACTAGAATTTGTTGCTTGTCATTTCTTAGAGGCAGCAACAGATTCTTTCAATAATTCTCATGTGGGTGACTGTTCAAGAAGATTGAGCTTGAGATTTCCTGCAACATGGACAATCGGAAACACTAGTACCGTTGTGGGGCATATTTGGAGCAACAAATCCAAGACGGAGTCTGGTTACTTCGAAAAGATCAGATTCGAAACTTGTCAGCGTGAGGCTGGAAGGGTTGTAGTTCCAGGCACCAAATATGAGTATACAAAACTTGACCAAGTAAACAAGTTGTGCCCAAGAAAGAAGCCTGCTGCTAATGGTCACAAAACCAATGTGTACCCAAGTCCAATTTCTTATGACATGAGATTCGATATGTCAGCTAGAAGTTCTAAACCATATTTAGACGCATGGGGCAGTTCTGAACCTGTCTCTGTCGGCGATAGGATCTACGAGGAGCTTCCTTCTTCAACGCAATATAGTGGTTCAGCTGCAATCAGTGAAGATGAAAATTACTCTCTAGCTCCTTCGAGCTCTCTTGTGATAATTTCCAGCTACAACAACAGCAACCCGTCCAATATTAGCTACAGAATAAGCGTTCAATTTCTGGAGCGGTCTGCTGGAAAGTTGGGCAACAAAATGAATATGACGGAAATGCATATCTCTGCTGAAGGGATATATGATGCAGAAGGAAGCCTGTGCATGGTAGGCTGCCGAAATGTTGACTTAAACAGTGATCACCAGACCACAGAAGATTTTGTAGATTGTGAGATCCTTGTCAATTTCCAGTTCCCTCCAGACAATCAACACAGTAAATATACAAGTTATATCAAGGTGAGGATTGAAAGCACACGAGAAAAGTCTGATCCTCTTCATTTCGAGCAATTGGATTTGTCATCAGTTGGTGGTTACATGATTGCAGCAGAACGATCCATCTGGAGGATGGACATGGAGATCATCTTGGTTCTTGTATCTACCACACTCGCATGTGTATTTGTGGCATTACAACAGTTTCATGTGAAAAAACATCCTGATGTGCTTCCCTCGATTTCCATCCTGATGCTACTGATTCTAACCGTTGGCTACATGATACCTCTTATGCTAAACTTTGATGCCATGTTCACTGACAACACCAACCGCCAATATGTGCCACTGGGAAGTGGTGGATGGCTTGCAGTTCATGAGGTAATTGTAAGGGTTATAACAATGGTAGCTTTCTTGTTGCAATTCCGTCTTCTGCAGCAGACATGGTCGGCAAGATCAGCAAATGGGAAGCAAAAGGAGCTTTGGGATGTGGAGAAGAAGGTTTTACCGCTGTATCCAATTGGGTATTTAGTTGCTTGGGCAGTGCTTCCCATTTCTGTGGACTTGAAATCTTATGCTGGTTTGGTCTTGGACGGTTATCTGTTGCCTCAAATTCTACTCAACGTGGTCTGCAAATCAAAGGAAAAGGCTCTGTCTGTTTCATTCTATACTGGAACAACTTTGGTTCGAGTGCTGCCACATGCTTATGACCTTTACAGGACTCACAGCTCTGTTCATCAACAACTTGATGAGTCATACATTTATGCCAGTCCTGCTGGAGATTTCTACTCTACTTCGTGGGATGTAATTATTCCTATTGGAGGTCTACTGTTTTCTCTGATCATTTTCTTGCAGCAGAAGTTTGGAGGTCGTTGCTTTCTTCCTCAGAAGTTGAGAGAGCTGGGTTCATATGAGAAAGTCCCTTCGGTTAGTGAAGCCGAATTGCCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

934

Amino Acids

105.28

Weight (kDa)

7.25

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 36 - 222 1.5e-18 DUF2921 lipocalin-like domain
DUF2921_N PF25333 249 - 417 4.5e-30 DUF2921 lipocalin-like domain
DUF2921_N PF25333 444 - 645 1.4e-27 DUF2921 lipocalin-like domain
DUF2921 PF11145 657 - 915 5e-62 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2249
AccB1I GGYRCC 1 cut(s) 1298
AccB7I CCANNNNNTGG 1 cut(s) 884
AccBSI CCGCTC 1 cut(s) 1660
AccI GTMKAC 2 cut(s) 1313, 2677
AciI CCGC 5 cut(s) 152, 1031, 1660, 2185, 2360
AcsI RAATTY 3 cut(s) 281, 1067, 2463
AcuI CTGAAG 3 cut(s) 108, 462, 1737
AfaI GTAC 7 cut(s) 315, 526, 701, 816, 874, 1189, 1388
AfiI CCNNNNNNNGG 6 cut(s) 151, 884, 1197, 1750, 1986, 2672
AflII CTTAAG 1 cut(s) 551
AhlI ACTAGT 2 cut(s) 578, 1184
AjnI CCWGG 2 cut(s) 404, 1294
AjuI GAANNNNNNNTTGG 2 cut(s) 1384, 1416
Alw21I GWGCWC 1 cut(s) 1583
Alw26I GTCTC 2 cut(s) 414, 1483
AlwNI CAGNNNCTG 1 cut(s) 291
Ama87I CYCGRG 3 cut(s) 134, 622, 766
AoxI GGCC 3 cut(s) 226, 380, 1001
ApaI GGGCCC 1 cut(s) 384
ApeKI GCWGC 9 cut(s) 981, 1094, 1361, 1538, 1758, 1967, 2287, 2545, 2704
ApoI RAATTY 3 cut(s) 281, 1067, 2463
ArsI GACNNNNNNTTYG 2 cut(s) 1400, 1432
AspS9I GGNCC 2 cut(s) 380, 381
AsuHPI GGTGA 6 cut(s) 43, 221, 755, 1139, 1778, 1894
AsuII TTCGAA 2 cut(s) 1242, 1257
AvaI CYCGRG 3 cut(s) 134, 622, 766
BaeGI GKGCMC 2 cut(s) 384, 1346
BaeI ACNNNNGTAYC 4 cut(s) 1171, 1204, 2348, 2381
BamHI GGATCC 1 cut(s) 643
BanI GGYRCC 1 cut(s) 1298
BanII GRGCYC 2 cut(s) 384, 1583
BauI CACGAG 2 cut(s) 908, 1899
BbsI GAAGAC 1 cut(s) 2273
Bbv12I GWGCWC 1 cut(s) 1583
BbvI GCAGC 9 cut(s) 993, 1106, 1348, 1525, 1745, 1979, 2299, 2532, 2716
BccI CCATC 4 cut(s) 1984, 1988, 2108, 2208
BciT130I CCWGG 2 cut(s) 406, 1296
BciVI GTATCC 1 cut(s) 2376
BclI TGATCA 3 cut(s) 754, 1783, 2691
BcoDI GTCTC 2 cut(s) 414, 1483
BcuI ACTAGT 2 cut(s) 578, 1184
BfaI CTAG 6 cut(s) 579, 890, 1064, 1185, 1431, 1568
BfmI CTRYAG 2 cut(s) 1633, 2285
BfrI CTTAAG 1 cut(s) 551
BfuI GTATCC 1 cut(s) 2376
BisI GCNGC 9 cut(s) 982, 1095, 1362, 1539, 1759, 1968, 2288, 2546, 2705
BlsI GCNGC 9 cut(s) 983, 1096, 1363, 1540, 1760, 1969, 2289, 2547, 2706
BmcAI AGTACT 1 cut(s) 816
Bme1390I CCNGG 2 cut(s) 406, 1296
BmeT110I CYCGRG 3 cut(s) 134, 622, 766
BmgT120I GGNCC 2 cut(s) 380, 381
BmiI GGNNCC 5 cut(s) 381, 382, 604, 645, 1300
BmrFI CCNGG 2 cut(s) 406, 1296
BmrI ACTGGG 1 cut(s) 2210
BmsI GCATC 6 cut(s) 418, 666, 1036, 1720, 2097, 2149
BmuI ACTGGG 1 cut(s) 2210
BoxI GACNNNNGTC 1 cut(s) 910
BpiI GAAGAC 1 cut(s) 2273
BpmI CTGGAG 6 cut(s) 313, 388, 1676, 1827, 2005, 2649
Bpu14I TTCGAA 2 cut(s) 1242, 1257
BpuEI CTTGAG 1 cut(s) 1171
BsaAI YACGTR 1 cut(s) 376
BsaBI GATNNNNATC 2 cut(s) 759, 2099
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 683
Bsc4I CCNNNNNNNGG 6 cut(s) 151, 884, 1197, 1750, 1986, 2672
Bse1I ACTGG 7 cut(s) 208, 604, 697, 1834, 2205, 2527, 2619
Bse3DI GCAATG 1 cut(s) 226
Bse8I GATNNNNATC 2 cut(s) 759, 2099
BseBI CCWGG 2 cut(s) 406, 1296
BseDI CCNNGG 1 cut(s) 683
BseJI GATNNNNATC 2 cut(s) 759, 2099
BseLI CCNNNNNNNGG 6 cut(s) 151, 884, 1197, 1750, 1986, 2672
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 4 cut(s) 288, 547, 850, 2750
BseNI ACTGG 7 cut(s) 208, 604, 697, 1834, 2205, 2527, 2619
BseRI GAGGAG 1 cut(s) 1517
BseSI GKGCMC 2 cut(s) 384, 1346
BseXI GCAGC 9 cut(s) 993, 1106, 1348, 1525, 1745, 1979, 2299, 2532, 2716
BseYI CCCAGC 2 cut(s) 884, 2752
BshFI GGCC 3 cut(s) 228, 382, 1003
BshNI GGYRCC 1 cut(s) 1298
BsiHKAI GWGCWC 1 cut(s) 1583
BsiHKCI CYCGRG 3 cut(s) 134, 622, 766
BslFI GGGAC 1 cut(s) 2756
BslI CCNNNNNNNGG 6 cut(s) 151, 884, 1197, 1750, 1986, 2672
BsmAI GTCTC 2 cut(s) 414, 1483
BsmFI GGGAC 1 cut(s) 2756
BsnI GGCC 3 cut(s) 228, 382, 1003
Bso31I GGTCTC 1 cut(s) 414
BsoBI CYCGRG 3 cut(s) 134, 622, 766
Bsp119I TTCGAA 2 cut(s) 1242, 1257
Bsp120I GGGCCC 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 384, 1346, 1583
Bsp1407I TGTACA 1 cut(s) 313
BspACI CCGC 5 cut(s) 152, 1031, 1660, 2185, 2360
BspANI GGCC 3 cut(s) 228, 382, 1003
BspCNI CTCAG 4 cut(s) 287, 546, 849, 2749
BspHI TCATGA 2 cut(s) 757, 2227
BspLI GGNNCC 5 cut(s) 381, 382, 604, 645, 1300
BspMAI CTGCAG 1 cut(s) 2289
BspT104I TTCGAA 2 cut(s) 1242, 1257
BspT107I GGYRCC 1 cut(s) 1298
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 1660
BsrDI GCAATG 1 cut(s) 226
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 7 cut(s) 208, 604, 697, 1834, 2205, 2527, 2619
BssECI CCNNGG 1 cut(s) 683
BssNAI GTATAC 1 cut(s) 1314
BssSI CACGAG 2 cut(s) 908, 1899
Bst1107I GTATAC 1 cut(s) 1314
Bst2BI CACGAG 2 cut(s) 908, 1899
Bst2UI CCWGG 2 cut(s) 406, 1296
Bst4CI ACNGT 9 cut(s) 811, 1133, 1192, 1781, 1859, 2058, 2125, 2447, 2682
Bst6I CTCTTC 3 cut(s) 572, 742, 1923
BstAFI CTTAAG 1 cut(s) 551
BstAUI TGTACA 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 376
BstBI TTCGAA 2 cut(s) 1242, 1257
BstC8I GCNNGC 3 cut(s) 217, 1359, 2220
BstDEI CTNAG 7 cut(s) 93, 230, 274, 533, 836, 1087, 2736
BstENI CCTNNNNNAGG 1 cut(s) 2670
BstMAI GTCTC 2 cut(s) 414, 1483
BstMWI GCNNNNNNNGC 5 cut(s) 225, 1755, 2309, 2329, 2624
BstNI CCWGG 2 cut(s) 406, 1296
BstNSI RCATGY 2 cut(s) 2037, 2555
BstPAI GACNNNNGTC 1 cut(s) 910
BstSCI CCNGG 2 cut(s) 404, 1294
BstSFI CTRYAG 2 cut(s) 1633, 2285
BstSLI GKGCMC 2 cut(s) 384, 1346
BstV1I GCAGC 9 cut(s) 993, 1106, 1348, 1525, 1745, 1979, 2299, 2532, 2716
BstV2I GAAGAC 1 cut(s) 2273
BstX2I RGATCY 4 cut(s) 643, 892, 1494, 1818
BstXI CCANNNNNNTGG 1 cut(s) 2410
BstYI RGATCY 4 cut(s) 643, 892, 1494, 1818
BstZ17I GTATAC 1 cut(s) 1314
BsuI GTATCC 1 cut(s) 2376
BsuRI GGCC 3 cut(s) 228, 382, 1003
BtgZI GCGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 2400
BtsIMutI CAGTG 7 cut(s) 201, 747, 1552, 1786, 2169, 2198, 2400
Cac8I GCNNGC 3 cut(s) 217, 1359, 2220
CaiI CAGNNNCTG 1 cut(s) 291
CciI TCATGA 2 cut(s) 757, 2227
Cfr13I GGNCC 2 cut(s) 380, 381
CseI GACGC 2 cut(s) 221, 1463
Csp6I GTAC 7 cut(s) 314, 525, 700, 815, 873, 1188, 1387
CviQI GTAC 7 cut(s) 314, 525, 700, 815, 873, 1188, 1387
DdeI CTNAG 7 cut(s) 93, 230, 274, 533, 836, 1087, 2736
Eam1104I CTCTTC 3 cut(s) 572, 742, 1923
EarI CTCTTC 3 cut(s) 572, 742, 1923
Ecl136II GAGCTC 1 cut(s) 1581
Eco147I AGGCCT 1 cut(s) 1003
Eco24I GRGCYC 2 cut(s) 384, 1583
Eco31I GGTCTC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 1581
Eco57I CTGAAG 3 cut(s) 108, 462, 1737
Eco88I CYCGRG 3 cut(s) 134, 622, 766
EcoICRI GAGCTC 1 cut(s) 1581
EcoNI CCTNNNNNAGG 1 cut(s) 2670
EcoO109I RGGNCCY 2 cut(s) 380, 381
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 404, 1294
EcoT22I ATGCAT 1 cut(s) 1707
EcoT38I GRGCYC 2 cut(s) 384, 1583
FaqI GGGAC 1 cut(s) 2756
FauNDI CATATG 1 cut(s) 2761
FbaI TGATCA 3 cut(s) 754, 1783, 2691
FblI GTMKAC 2 cut(s) 1313, 2677
Fnu4HI GCNGC 9 cut(s) 982, 1095, 1362, 1539, 1759, 1968, 2288, 2546, 2705
FriOI GRGCYC 2 cut(s) 384, 1583
Fsp4HI GCNGC 9 cut(s) 982, 1095, 1362, 1539, 1759, 1968, 2288, 2546, 2705
FspBI CTAG 6 cut(s) 579, 890, 1064, 1185, 1431, 1568
GluI GCNGC 9 cut(s) 982, 1095, 1362, 1539, 1759, 1968, 2288, 2546, 2705
GsaI CCCAGC 2 cut(s) 888, 2756
GsuI CTGGAG 6 cut(s) 313, 388, 1676, 1827, 2005, 2649
HaeIII GGCC 3 cut(s) 228, 382, 1003
HgaI GACGC 2 cut(s) 221, 1463
HincII GTYRAC 2 cut(s) 141, 1771
HindII GTYRAC 2 cut(s) 141, 1771
HindIII AAGCTT 1 cut(s) 485
HphI GGTGA 6 cut(s) 43, 221, 755, 1139, 1778, 1894
HpyAV CCTTC 8 cut(s) 1028, 1275, 1521, 1584, 1712, 1730, 2344, 2784
HpyCH4III ACNGT 9 cut(s) 811, 1133, 1192, 1781, 1859, 2058, 2125, 2447, 2682
HpyCH4IV ACGT 3 cut(s) 365, 375, 2475
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 1755, 2309, 2329, 2624
HpyF3I CTNAG 7 cut(s) 93, 230, 274, 533, 836, 1087, 2736
HpySE526I ACGT 3 cut(s) 365, 375, 2475
Ksp22I TGATCA 3 cut(s) 754, 1783, 2691
LmnI GCTCC 8 cut(s) 270, 336, 407, 1209, 1504, 1576, 1657, 2329
Lsp1109I GCAGC 9 cut(s) 993, 1106, 1348, 1525, 1745, 1979, 2299, 2532, 2716
LweI GCATC 6 cut(s) 418, 666, 1036, 1720, 2097, 2149
MaeI CTAG 6 cut(s) 579, 890, 1064, 1185, 1431, 1568
MaeII ACGT 3 cut(s) 365, 375, 2475
MbiI CCGCTC 1 cut(s) 1660
MfeI CAATTG 2 cut(s) 1931, 2370
MflI RGATCY 4 cut(s) 643, 892, 1494, 1818
MhlI GDGCHC 3 cut(s) 384, 1346, 1583
MlyI GAGTC 6 cut(s) 146, 620, 900, 1238, 2566, 2612
MmeI TCCRAC 2 cut(s) 478, 686
Mph1103I ATGCAT 1 cut(s) 1707
MseI TTAA 3 cut(s) 552, 918, 1775
MslI CAYNNNNRTG 8 cut(s) 171, 426, 1125, 2032, 2079, 2105, 2408, 2556
MspA1I CMGCKG 2 cut(s) 1538, 2362
MspCI CTTAAG 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 406, 1296
MunI CAATTG 2 cut(s) 1931, 2370
MvaI CCWGG 2 cut(s) 406, 1296
MwoI GCNNNNNNNGC 5 cut(s) 225, 1755, 2309, 2329, 2624
NdeI CATATG 1 cut(s) 2761
NlaIV GGNNCC 5 cut(s) 381, 382, 604, 645, 1300
NmuCI GTSAC 5 cut(s) 209, 438, 743, 1127, 1370
NsiI ATGCAT 1 cut(s) 1707
NspI RCATGY 2 cut(s) 2037, 2555
NspV TTCGAA 2 cut(s) 1242, 1257
PaeR7I CTCGAG 1 cut(s) 766
PagI TCATGA 2 cut(s) 757, 2227
PceI AGGCCT 1 cut(s) 1003
PfeI GAWTC 5 cut(s) 473, 1103, 1254, 1416, 2116
PflFI GACNNNGTC 2 cut(s) 1228, 2296
PflMI CCANNNNNTGG 1 cut(s) 884
PkrI GCNGC 9 cut(s) 983, 1096, 1363, 1540, 1760, 1969, 2289, 2547, 2706
PleI GAGTC 6 cut(s) 145, 619, 900, 1237, 2566, 2611
PpsI GAGTC 6 cut(s) 145, 619, 900, 1237, 2566, 2611
Ppu21I YACGTR 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 910
PsiI TTATAA 1 cut(s) 2249
Psp124BI GAGCTC 1 cut(s) 1583
Psp6I CCWGG 2 cut(s) 404, 1294
PspFI CCCAGC 2 cut(s) 884, 2752
PspGI CCWGG 2 cut(s) 404, 1294
PspN4I GGNNCC 5 cut(s) 381, 382, 604, 645, 1300
PspOMI GGGCCC 1 cut(s) 380
PspPI GGNCC 2 cut(s) 380, 381
PspXI VCTCGAGB 1 cut(s) 766
PsrI GAACNNNNNNTAC 2 cut(s) 683, 715
PstI CTGCAG 1 cut(s) 2289
PstNI CAGNNNCTG 1 cut(s) 291
PsuI RGATCY 4 cut(s) 643, 892, 1494, 1818
PsyI GACNNNGTC 2 cut(s) 1228, 2296
PvuII CAGCTG 1 cut(s) 1538
RsaI GTAC 7 cut(s) 315, 526, 701, 816, 874, 1189, 1388
RsaNI GTAC 7 cut(s) 314, 525, 700, 815, 873, 1188, 1387
RseI CAYNNNNRTG 8 cut(s) 171, 426, 1125, 2032, 2079, 2105, 2408, 2556
SacI GAGCTC 1 cut(s) 1583
SaqAI TTAA 3 cut(s) 552, 918, 1775
SatI GCNGC 9 cut(s) 982, 1095, 1362, 1539, 1759, 1968, 2288, 2546, 2705
Sau96I GGNCC 2 cut(s) 380, 381
ScaI AGTACT 1 cut(s) 816
SchI GAGTC 6 cut(s) 146, 620, 900, 1238, 2566, 2612
ScrFI CCNGG 2 cut(s) 406, 1296
SduI GDGCHC 3 cut(s) 384, 1346, 1583
SfaNI GCATC 6 cut(s) 418, 666, 1036, 1720, 2097, 2149
SfcI CTRYAG 2 cut(s) 1633, 2285
Sfr274I CTCGAG 1 cut(s) 766
SfuI TTCGAA 2 cut(s) 1242, 1257
SlaI CTCGAG 1 cut(s) 766
SmiMI CAYNNNNRTG 8 cut(s) 171, 426, 1125, 2032, 2079, 2105, 2408, 2556
SmlI CTYRAG 3 cut(s) 551, 766, 1150
SmoI CTYRAG 3 cut(s) 551, 766, 1150
SpeI ACTAGT 2 cut(s) 578, 1184
SseBI AGGCCT 1 cut(s) 1003
SsiI CCGC 5 cut(s) 152, 1031, 1660, 2185, 2360
SspI AATATT 1 cut(s) 1627
SspMI CTAG 6 cut(s) 579, 890, 1064, 1185, 1431, 1568
SstI GAGCTC 1 cut(s) 1583
StuI AGGCCT 1 cut(s) 1003
StyD4I CCNGG 2 cut(s) 404, 1294
TaaI ACNGT 9 cut(s) 811, 1133, 1192, 1781, 1859, 2058, 2125, 2447, 2682
TaiI ACGT 3 cut(s) 368, 378, 2478
TatI WGTACW 4 cut(s) 313, 699, 814, 872
TfiI GAWTC 5 cut(s) 473, 1103, 1254, 1416, 2116
Tru1I TTAA 3 cut(s) 552, 918, 1775
Tru9I TTAA 3 cut(s) 552, 918, 1775
TscAI CASTG 7 cut(s) 208, 754, 1552, 1786, 2176, 2205, 2400
TseFI GTSAC 5 cut(s) 209, 438, 743, 1127, 1370
TseI GCWGC 9 cut(s) 981, 1094, 1361, 1538, 1758, 1967, 2287, 2545, 2704
Tsp45I GTSAC 5 cut(s) 209, 438, 743, 1127, 1370
TspGWI ACGGA 3 cut(s) 1241, 1712, 2267
TspRI CASTG 7 cut(s) 208, 754, 1552, 1786, 2176, 2205, 2400
Tth111I GACNNNGTC 2 cut(s) 1228, 2296
Van91I CCANNNNNTGG 1 cut(s) 884
Vha464I CTTAAG 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 2670
XapI RAATTY 3 cut(s) 281, 1067, 2463
XceI RCATGY 2 cut(s) 2037, 2555
XcmI CCANNNNNNNNNTGG 2 cut(s) 1021, 1987
XhoI CTCGAG 1 cut(s) 766
XmiI GTMKAC 2 cut(s) 1313, 2677
XspI CTAG 6 cut(s) 579, 890, 1064, 1185, 1431, 1568
ZrmI AGTACT 1 cut(s) 816
Zsp2I ATGCAT 1 cut(s) 1707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.