Rroxscaffold_1G00046040

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000420
Physical Location & Seq
Forward (+)
65202228 .. 65203400
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046040.1

Sequence Viewer

Length: 1173 bp
ATGAAGCTTTTCATATCCTTTTTAATTTTTACCACCATTTCCTTCATTTCATTGTCGTTCTCTGCTTCAGCTGCTCCAGTCTCTTATGCTGACCATTGTGCTTCAGTTGTTCCTGAGTCAACCGAAAAAATAAATGCAGGATCTCAGTTTGTACATCTGATTCACACAGGTTACTACTACACTGGTGGTGGCAGTGACATTCTTAATCTATACTCACCAGATGATCAGGTCAAAAATTCAATTGGCTTCCAATGCTGGGATATTAGAGAAACTCGTGTACAAGGCTTGTTCAAGGTTGAAGGAACTCTTCAGTTTCAAGTAACCCACAGGCATGAGCTGCAAAGAATGCCGCCTATAATAATTTCAGGTTCGGTTTCCTTTAGACTAAATGGATTCTGGTCCGAATCTTCTGGGAAGCTCTGCATGGTTGGATCATCGTCCATTTACTCGAAACAAGGTAATCCGCTTGTTGTTCTTAAGCTGTATAATCTCACCATGAATTCCACTAGTGTTACAAGTTTGATTAGTGGAACCTTTGAGAATGTCATGGTATATGAGAATGATCCCAAGTATTTGGGACCAATCTCTATTTTGATGTTTCCTCGCATGAACTACGAGTACACTTTGGTCTCAACTACTAATAGCAGTTGCTCTAGTGGAAGTGAAGATACCCCACGCTCTTTACAGGTTGAGAGATTTTGTTCACTACTATCATCAATAGTACTAAATCATGACTTTCCACTCAAATTTTCAAGCCACTGCATCACTGCAGAAAATTGCACTCCAATTTCTGTGTCTAATTTACCTCGGGCTGTGTTGATTAAGGACGTTACATGCTCAGAGGATAATCGAAGGGTGAGAGTTCTGGTGGAATTTTTAGACGGTAGGCTAAAACAGTGGCCAACGCTCTTTAATCCTAATACAACTTTAGTTGGGGAAGGCTCATGGGATGCAAAGAGGAATCAGCTAGGTGTTGTTGCTTGTCGATTCTTGAATACAACAAATTCTTTGAATAATACTAATGTGGGTGATTGTTCAACAAGATTGAGCTTGAGAATTCCTGCAACAGGGACAATTGGAAGGACTAGCAGCATTGTGGGGCATATTTGGAGCACCAAAACTGTGACAGAGTTGGGCTACTTTGAAAAGATCACACACTACAAGAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

390

Amino Acids

43.38

Weight (kDa)

8.61

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 29 - 196 1.5e-19 DUF2921 lipocalin-like domain
DUF2921_N PF25333 302 - 385 6.3e-23 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 350, 464
AclWI GGATC 3 cut(s) 148, 439, 557
AcoI YGGCCR 1 cut(s) 899
AcsI RAATTY 6 cut(s) 235, 499, 746, 872, 1003, 1056
AcuI CTGAAG 3 cut(s) 51, 87, 293
AfaI GTAC 4 cut(s) 153, 279, 620, 723
AfiI CCNNNNNNNGG 2 cut(s) 256, 1067
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 9 cut(s) 240, 292, 299, 317, 753, 994, 1012, 1038, 1145
AhlI ACTAGT 1 cut(s) 506
AluBI AGCT 7 cut(s) 7, 71, 337, 418, 481, 967, 1050
AluI AGCT 7 cut(s) 7, 71, 337, 418, 481, 967, 1050
Alw21I GWGCWC 1 cut(s) 1115
Alw26I GTCTC 2 cut(s) 85, 634
AlwI GGATC 3 cut(s) 148, 439, 557
Ama87I CYCGRG 1 cut(s) 807
AoxI GGCC 1 cut(s) 899
ApeKI GCWGC 3 cut(s) 71, 337, 1089
ApoI RAATTY 6 cut(s) 235, 499, 746, 872, 1003, 1056
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 399, 578
AsuHPI GGTGA 4 cut(s) 207, 484, 868, 1040
AvaI CYCGRG 1 cut(s) 807
AvaII GGWCC 2 cut(s) 399, 578
BalI TGGCCA 1 cut(s) 901
BarI GAAGNNNNNNTAC 2 cut(s) 652, 684
BauI CACGAG 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 1115
BbvI GCAGC 3 cut(s) 58, 324, 1101
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 85, 634
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 4 cut(s) 507, 654, 968, 1086
BfmI CTRYAG 1 cut(s) 768
BfrI CTTAAG 1 cut(s) 476
BisI GCNGC 4 cut(s) 72, 338, 350, 1090
BlsI GCNGC 4 cut(s) 73, 339, 351, 1091
BmcAI AGTACT 1 cut(s) 723
Bme18I GGWCC 2 cut(s) 399, 578
BmeT110I CYCGRG 1 cut(s) 807
BmgT120I GGNCC 2 cut(s) 399, 578
BmiI GGNNCC 2 cut(s) 532, 579
BmsI GCATC 2 cut(s) 771, 940
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 1072
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 1 cut(s) 806
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 1067
Bse1I ACTGG 2 cut(s) 77, 187
BseDI CCNNGG 1 cut(s) 806
BseGI GGATG 1 cut(s) 955
BseLI CCNNNNNNNGG 2 cut(s) 256, 1067
BseMII CTCAG 3 cut(s) 105, 158, 852
BseNI ACTGG 2 cut(s) 77, 187
BseXI GCAGC 3 cut(s) 58, 324, 1101
BseYI CCCAGC 1 cut(s) 255
BshFI GGCC 1 cut(s) 901
BsiHKAI GWGCWC 1 cut(s) 1115
BsiHKCI CYCGRG 1 cut(s) 807
BslFI GGGAC 2 cut(s) 591, 1084
BslI CCNNNNNNNGG 2 cut(s) 256, 1067
BsmAI GTCTC 2 cut(s) 85, 634
BsmFI GGGAC 2 cut(s) 591, 1084
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 901
Bso31I GGTCTC 1 cut(s) 634
BsoBI CYCGRG 1 cut(s) 807
Bsp1286I GDGCHC 1 cut(s) 1115
Bsp1407I TGTACA 2 cut(s) 151, 277
Bsp143I GATC 5 cut(s) 140, 223, 431, 562, 1149
BspACI CCGC 2 cut(s) 350, 464
BspANI GGCC 1 cut(s) 901
BspCNI CTCAG 3 cut(s) 106, 157, 851
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 2 cut(s) 532, 579
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 3 cut(s) 148, 439, 557
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 634
BsrGI TGTACA 2 cut(s) 151, 277
BsrI ACTGG 2 cut(s) 77, 187
BssECI CCNNGG 1 cut(s) 806
BssMI GATC 5 cut(s) 140, 223, 431, 562, 1149
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 884, 897, 1123
Bst6I CTCTTC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 476
BstAPI GCANNNNNTGC 2 cut(s) 337, 346
BstAUI TGTACA 2 cut(s) 151, 277
BstDEI CTNAG 3 cut(s) 114, 144, 838
BstENI CCTNNNNNAGG 1 cut(s) 1065
BstF5I GGATG 1 cut(s) 955
BstKTI GATC 5 cut(s) 143, 226, 434, 565, 1152
BstMAI GTCTC 2 cut(s) 85, 634
BstMBI GATC 5 cut(s) 140, 223, 431, 562, 1149
BstMWI GCNNNNNNNGC 4 cut(s) 71, 252, 337, 346
BstNSI RCATGY 1 cut(s) 837
BstSFI CTRYAG 1 cut(s) 768
BstV1I GCAGC 3 cut(s) 58, 324, 1101
BstX2I RGATCY 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 1 cut(s) 901
BtsCI GGATG 1 cut(s) 955
BtsI GCAGTG 3 cut(s) 199, 757, 765
BtsIMutI CAGTG 5 cut(s) 180, 199, 757, 765, 902
CciI TCATGA 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 399, 578
Csp6I GTAC 4 cut(s) 152, 278, 619, 722
CviAII CATG 8 cut(s) 332, 424, 496, 547, 607, 731, 834, 945
CviQI GTAC 4 cut(s) 152, 278, 619, 722
DdeI CTNAG 3 cut(s) 114, 144, 838
DpnI GATC 5 cut(s) 142, 225, 433, 564, 1151
DpnII GATC 5 cut(s) 140, 223, 431, 562, 1149
EaeI YGGCCR 1 cut(s) 899
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 2 cut(s) 399, 578
Eco57I CTGAAG 3 cut(s) 51, 87, 293
Eco88I CYCGRG 1 cut(s) 807
EcoNI CCTNNNNNAGG 1 cut(s) 1065
EcoRI GAATTC 2 cut(s) 499, 1056
FaeI CATG 8 cut(s) 335, 427, 499, 550, 610, 734, 837, 948
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 2 cut(s) 591, 1084
FatI CATG 8 cut(s) 331, 423, 495, 546, 606, 730, 833, 944
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 4 cut(s) 72, 338, 350, 1090
FokI GGATG 1 cut(s) 962
Fsp4HI GCNGC 4 cut(s) 72, 338, 350, 1090
FspBI CTAG 4 cut(s) 507, 654, 968, 1086
GluI GCNGC 4 cut(s) 72, 338, 350, 1090
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 901
Hin1II CATG 8 cut(s) 335, 427, 499, 550, 610, 734, 837, 948
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 6 cut(s) 116, 160, 393, 404, 961, 987
HphI GGTGA 4 cut(s) 207, 484, 868, 1040
Hpy166II GTNNAC 4 cut(s) 120, 278, 621, 704
Hpy188I TCNGA 3 cut(s) 159, 403, 841
Hpy188III TCNNGA 3 cut(s) 113, 731, 991
Hpy8I GTNNAC 4 cut(s) 120, 278, 621, 704
HpyAV CCTTC 5 cut(s) 52, 293, 846, 932, 1074
HpyCH4III ACNGT 3 cut(s) 884, 897, 1123
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 8 cut(s) 137, 340, 423, 762, 770, 780, 953, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 252, 337, 346
HpyF3I CTNAG 3 cut(s) 114, 144, 838
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 8 cut(s) 335, 427, 499, 550, 610, 734, 837, 948
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 5 cut(s) 140, 223, 431, 562, 1149
LmnI GCTCC 2 cut(s) 79, 1110
Lsp1109I GCAGC 3 cut(s) 58, 324, 1101
LweI GCATC 2 cut(s) 771, 940
MaeI CTAG 4 cut(s) 507, 654, 968, 1086
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 6 cut(s) 170, 194, 319, 511, 829, 1123
MalI GATC 5 cut(s) 142, 225, 433, 564, 1151
MboI GATC 5 cut(s) 140, 223, 431, 562, 1149
MboII GAAGA 3 cut(s) 299, 399, 677
MfeI CAATTG 2 cut(s) 240, 1074
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 1115
MlsI TGGCCA 1 cut(s) 901
MluNI TGGCCA 1 cut(s) 901
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 4 cut(s) 612, 816, 835, 951
Mox20I TGGCCA 1 cut(s) 901
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 901
MseI TTAA 5 cut(s) 23, 204, 477, 822, 912
MslI CAYNNNNRTG 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 901
MspA1I CMGCKG 1 cut(s) 71
MspCI CTTAAG 1 cut(s) 476
MunI CAATTG 2 cut(s) 240, 1074
Mva1269I GAATGC 1 cut(s) 351
MwoI GCNNNNNNNGC 4 cut(s) 71, 252, 337, 346
NdeII GATC 5 cut(s) 140, 223, 431, 562, 1149
NlaIII CATG 8 cut(s) 335, 427, 499, 550, 610, 734, 837, 948
NlaIV GGNNCC 2 cut(s) 532, 579
NmuCI GTSAC 2 cut(s) 194, 1123
NspI RCATGY 1 cut(s) 837
PagI TCATGA 1 cut(s) 730
PctI GAATGC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 5 cut(s) 160, 393, 404, 961, 987
PkrI GCNGC 4 cut(s) 73, 339, 351, 1091
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 532, 579
PspPI GGNCC 2 cut(s) 399, 578
PsrI GAACNNNNNNTAC 2 cut(s) 602, 634
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 4 cut(s) 153, 279, 620, 723
RsaNI GTAC 4 cut(s) 152, 278, 619, 722
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 5 cut(s) 23, 204, 477, 822, 912
SatI GCNGC 4 cut(s) 72, 338, 350, 1090
Sau3AI GATC 5 cut(s) 140, 223, 431, 562, 1149
Sau96I GGNCC 2 cut(s) 399, 578
ScaI AGTACT 1 cut(s) 723
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 1115
SfaNI GCATC 2 cut(s) 771, 940
SfcI CTRYAG 1 cut(s) 768
SinI GGWCC 2 cut(s) 399, 578
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 2 cut(s) 476, 1051
SmoI CTYRAG 2 cut(s) 476, 1051
SpeI ACTAGT 1 cut(s) 506
SsiI CCGC 2 cut(s) 350, 464
SspMI CTAG 4 cut(s) 507, 654, 968, 1086
TaaI ACNGT 3 cut(s) 884, 897, 1123
TaiI ACGT 1 cut(s) 831
TaqI TCGA 3 cut(s) 449, 850, 985
TatI WGTACW 4 cut(s) 151, 277, 618, 721
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 5 cut(s) 160, 393, 404, 961, 987
Tru1I TTAA 5 cut(s) 23, 204, 477, 822, 912
Tru9I TTAA 5 cut(s) 23, 204, 477, 822, 912
TscAI CASTG 5 cut(s) 187, 199, 764, 772, 902
TseFI GTSAC 2 cut(s) 194, 1123
TseI GCWGC 3 cut(s) 71, 337, 1089
Tsp45I GTSAC 2 cut(s) 194, 1123
TspDTI ATGAA 5 cut(s) 17, 34, 39, 512, 623
TspRI CASTG 5 cut(s) 187, 199, 764, 772, 902
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 399, 578
XagI CCTNNNNNAGG 1 cut(s) 1065
XapI RAATTY 6 cut(s) 235, 499, 746, 872, 1003, 1056
XceI RCATGY 1 cut(s) 837
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 507, 654, 968, 1086
ZrmI AGTACT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.