Rorug05G0144600

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000420
Physical Location & Seq
Forward (+)
13401727 .. 13406007
4281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0144600.1

Sequence Viewer

Length: 2409 bp
ATGGCTGCTTCTTCCTTACGAGAGTTGCTTACAGAAGAAGCATATCAACGCGGGAACAAAAACAACAACGTGTTCGTCGCCAAAACCAAAAAACCAGTGAAGTACAGAGTTGCTCCAGCTGAGTCTCTGGCTTTGTTGCCTATACACATCTGCCACGATCGAAAAAGCTACGACTTCTCCAAGCACAAGGCTCAAAACTCTGTTATGCGAAAAGGGTCGTCTAGAAGAGTGAGTTCTACTTCAGAGAGGTCGAATTCCAAGACAGTGGTCTCGGAAAGTAGTTCGAGAAGAACAGAGCCTGCGGCGCTTGATGAAGTTGCCACTAAAGCTGTGGTTTCTATTCTCAGCGGATATGCGGGTCGTTATATAAAGGACGAGGAGTTTAGAGAAGGGATTGAGGAGAAGTGTAGGGCTTGTTTGGCGAGGAAGAAAAGAGATTCGGATAGTGGAGTACTTGAGACTTTGGAATCAGGTGTTGAAAATGTTAACAAGTTGGTGGAGAATCCAGTTTTTTCGACGAAAGCAATGAGAAAATGTATTGGGAATTTGAGCAGTGTTGTTGCTTCTCTGGATGCCAATAAGTCCAAGATGAATGCTTCGACTTGTGGTATACCCAATTCAAATCTCTCTGCTTGTGCTCAGCTCTACTTGGCAATTGTTCACAAGCTTGAGAGAAATGACTTGGTTTCTGCTAAGCATTTGCTTCAAGTTTTCTGTGATTCACCATTTTTAGCAAGAACCCATTTGCTTCCTGATCTATGGGAACATTTCTTACTTCCACATCTTCTTCATCTGAAGATATGGTATACCAAGGAGATTGAGGTTGTTTCACACTCATTTGAGAAGGAGAAGATAATGAAATCCTTAACCAGAGTCTATAATGACCAAATGGATTTGGGGACTACAAAGTTTGCTCAATACTACAAAGAGTGGCTTAAATTTGGGGCTGAGGCTCCTCCTGTTGCTCCTGAAATACCTCTGCCTTCAGTACCAAGTAGCAGATCAAGACGAAGGAGAGCATCCGATTCTTTCGCTTCACATTCCTCATTGAACAAAAATTTATATCAGGCTGTGTTTGGCCCCACACTCGAAAGGCGATCAGTGGACCTTGATGATCGAAATGGAGTTTCAATTGCTTCTTGGGATGTAAATGAAGAGGAGAAGCTGTTTGAAGATGAAGCTAATGCAGACAAGTACAACAGTCTCAGTTTTGTTCATAGGGAAGACAGTAATAGACGAAAGTCATCGAGCGGAAGTCATAGAAATCCAAAAACTGAGTTATGGCCTGAGTCTGATCAGACAAAGAAATCAGACTATTTTGGATTCTTTAGCTGCCAGAATGCACCTACTGAATGCCTAGTGAATAGGAATCTCATATTTAAGAGTAATTCAGTTCAACAAGAAGACAATTCCCACCTTCCTTCAAGCAATTTAGGCAGTGCAATCAGTACTCTTTACTCGTCGGATAGTCTAAGTGATTGCGAAATTGCAGTTCGTGCAATTACCAAAGCTTGGTTGGACTCACATGGTGATCCTGTCATTGAAGCCATGTTATCCGAGCCACCTCTTATCCAGGGAATGCTGGAGGTGTTGTTTGCTTCCACTGATGATGAAATTTTGGAACTAGTAATATCGGTTTTAGCTGAATTTGTAGCAAGAAATGAGCAGAATAGAAAGATAATACTGAATTTTGATCCACAGCTTGAAATCTTCATGAGACTTCTAAGAAGTAGTGGTCTATTTTTGAAAGCAGCTGTTTTGCTTTACCTGTTGATGCCAAAGGCAAAACAGATGATATCACTTGAATGGGTGGCACTAGTCCTTCGAGTACTCGAGTTTGGAGACCAGTTGCAGACCCTATTCACCGTTCGATGCAGCCCTCAAGCAGCAGCGTTGTACCTTTTGGACCAGCTTCTTACGGGTTTTGATGAAGATCGGAACTTGGAGAATGCTAGACAGGTGGTTTCTCTAGGAGGCTTAAGCCTTCTGGTGACTCAAATTGAGAAAGGGGATACTCATGAGAGGAATAATGTTGCTTCCATCATTTCATGCTGTGTTCGAGCTGATGGAAGCTGTCGAAACTACTTGGCTGATTTTCTGAACAAGCCTTCTCTTCTCGAACTCATTGTACTCGGAAATGGAAGCAACTCAACTTGTTCTGCATTTGCTCTATTGATTGAAATACTCTGCCTTAGTAGACGAACGAAGATCACTCAAATCCTAGAAGGACTGAAAGAAGGATGCTGTGGCTTGAACACAATGCAAATTTTATTGGTCTATCTGCAGAGAGCTTCACCAGAAGAGCGCCCCTTAGTTGCAGCCATATTACTACAACTTGATCTTATGTTTTGTTGCAGGGAGATCCTTTTAGATGCAGTGTATATAGAGAAGAAGCCATCGAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

802

Amino Acids

89.87

Weight (kDa)

7.2

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_LIN PF23568 106 - 329 1.5e-90 E3 ubiquitin-protein ligase LIN-like, ARM repeat
ARM_LIN_2nd PF23654 475 - 636 9e-60 E3 ubiquitin-protein ligase LIN-like, ARM repeat
ARM_LIN_C PF23628 637 - 782 1.3e-52 Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1512
AccBSI CCGCTC 1 cut(s) 1251
AccI GTMKAC 3 cut(s) 610, 806, 2197
AccII CGCG 1 cut(s) 51
AciI CCGC 5 cut(s) 51, 302, 348, 356, 1251
AclWI GGATC 3 cut(s) 1526, 1688, 2356
AcsI RAATTY 8 cut(s) 253, 544, 938, 1057, 1614, 1646, 1687, 2265
AcuI CTGAAG 3 cut(s) 225, 815, 969
AdeI CACNNNGTG 1 cut(s) 1529
AfaI GTAC 8 cut(s) 104, 453, 990, 1196, 1450, 1830, 1898, 2130
AfiI CCNNNNNNNGG 1 cut(s) 1512
AflII CTTAAG 1 cut(s) 1978
AflIII ACRYGT 1 cut(s) 69
AhlI ACTAGT 2 cut(s) 1624, 1816
AjnI CCWGG 1 cut(s) 1572
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 6 cut(s) 129, 274, 452, 1208, 1711, 1836
AlwI GGATC 3 cut(s) 1526, 1688, 2356
AlwNI CAGNNNCTG 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 1832
AoxI GGCC 2 cut(s) 1078, 1283
ApeKI GCWGC 7 cut(s) 5, 1332, 1751, 1875, 1886, 1889, 2318
ApoI RAATTY 8 cut(s) 253, 544, 938, 1057, 1614, 1646, 1687, 2265
AspLEI GCGC 2 cut(s) 307, 2307
AspS9I GGNCC 3 cut(s) 1079, 1105, 1906
AsuHPI GGTGA 5 cut(s) 714, 1541, 1855, 2002, 2286
AvaI CYCGRG 1 cut(s) 1832
AvaII GGWCC 2 cut(s) 1105, 1906
BbsI GAAGAC 2 cut(s) 1230, 1410
Bbv12I GWGCWC 1 cut(s) 640
BbvCI CCTCAGC 1 cut(s) 948
BbvI GCAGC 6 cut(s) 1319, 1763, 1887, 1898, 1901, 2330
BccI CCATC 3 cut(s) 2048, 2060, 2404
BciT130I CCWGG 1 cut(s) 1574
BciVI GTATCC 1 cut(s) 2005
BclI TGATCA 1 cut(s) 1294
BcoDI GTCTC 6 cut(s) 129, 274, 452, 1208, 1711, 1836
BcuI ACTAGT 2 cut(s) 1624, 1816
BfaI CTAG 7 cut(s) 222, 1358, 1625, 1817, 1953, 1970, 2222
BfmI CTRYAG 1 cut(s) 2282
BfoI RGCGCY 2 cut(s) 308, 2308
BfrI CTTAAG 1 cut(s) 1978
BfuI GTATCC 1 cut(s) 2005
BisI GCNGC 8 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890, 2319
BlpI GCTNAGC 2 cut(s) 639, 693
BlsI GCNGC 8 cut(s) 7, 304, 1334, 1753, 1877, 1888, 1891, 2320
BmcAI AGTACT 3 cut(s) 453, 1450, 1830
Bme1390I CCNGG 1 cut(s) 1574
Bme18I GGWCC 2 cut(s) 1105, 1906
BmeT110I CYCGRG 1 cut(s) 1832
BmgT120I GGNCC 3 cut(s) 1079, 1105, 1906
BmiI GGNNCC 2 cut(s) 954, 1081
BmrFI CCNGG 1 cut(s) 1574
BmsI GCATC 6 cut(s) 562, 1028, 1764, 1862, 2231, 2362
BoxI GACNNNNGTC 2 cut(s) 266, 1240
BpiI GAAGAC 2 cut(s) 1230, 1410
BpmI CTGGAG 2 cut(s) 99, 1604
Bpu10I CCTNAGC 1 cut(s) 948
Bpu1102I GCTNAGC 2 cut(s) 639, 693
BpuEI CTTGAG 3 cut(s) 476, 689, 1866
BsaBI GATNNNNATC 1 cut(s) 1932
BsaI GGTCTC 2 cut(s) 274, 1836
BsaJI CCNNGG 2 cut(s) 810, 1573
BsaXI ACNNNNNCTCC 6 cut(s) 161, 191, 1151, 1181, 1577, 1607
Bsc4I CCNNNNNNNGG 1 cut(s) 1512
Bse1I ACTGG 3 cut(s) 95, 506, 1846
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 1932
BseBI CCWGG 1 cut(s) 1574
BseDI CCNNGG 2 cut(s) 810, 1573
BseGI GGATG 4 cut(s) 577, 1019, 1150, 2246
BseJI GATNNNNATC 1 cut(s) 1932
BseLI CCNNNNNNNGG 1 cut(s) 1512
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 7 cut(s) 111, 358, 653, 939, 1219, 1266, 1278
BseNI ACTGG 3 cut(s) 95, 506, 1846
BseRI GAGGAG 4 cut(s) 392, 413, 945, 1172
BseXI GCAGC 6 cut(s) 1319, 1763, 1887, 1898, 1901, 2330
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 1080, 1285
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 1832
BslFI GGGAC 1 cut(s) 913
BslI CCNNNNNNNGG 1 cut(s) 1512
BsmAI GTCTC 6 cut(s) 129, 274, 452, 1208, 1711, 1836
BsmFI GGGAC 1 cut(s) 913
BsmI GAATGC 5 cut(s) 598, 1345, 1358, 1584, 1954
BsnI GGCC 2 cut(s) 1080, 1285
Bso31I GGTCTC 2 cut(s) 274, 1836
BsoBI CYCGRG 1 cut(s) 1832
Bsp1286I GDGCHC 1 cut(s) 640
Bsp1720I GCTNAGC 2 cut(s) 639, 693
BspACI CCGC 5 cut(s) 51, 302, 348, 356, 1251
BspANI GGCC 2 cut(s) 1080, 1285
BspCNI CTCAG 7 cut(s) 112, 357, 652, 940, 1218, 1267, 1279
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 2 cut(s) 1713, 2017
BspLI GGNNCC 2 cut(s) 954, 1081
BspMAI CTGCAG 1 cut(s) 2286
BspPI GGATC 3 cut(s) 1526, 1688, 2356
BspQI GCTCTTC 1 cut(s) 2295
BspTI CTTAAG 1 cut(s) 1978
BspTNI GGTCTC 2 cut(s) 274, 1836
BsrBI CCGCTC 1 cut(s) 1251
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 3 cut(s) 95, 506, 1846
BssECI CCNNGG 2 cut(s) 810, 1573
BssNAI GTATAC 2 cut(s) 611, 807
BssT1I CCWWGG 1 cut(s) 810
Bst1107I GTATAC 2 cut(s) 611, 807
Bst2UI CCWGG 1 cut(s) 1574
Bst4CI ACNGT 4 cut(s) 265, 1202, 1229, 1867
Bst6I CTCTTC 4 cut(s) 220, 1149, 2118, 2295
BstAFI CTTAAG 1 cut(s) 1978
BstAPI GCANNNNNTGC 1 cut(s) 1496
BstC8I GCNNGC 1 cut(s) 300
BstF5I GGATG 4 cut(s) 577, 1019, 1150, 2246
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 2 cut(s) 308, 2308
BstHHI GCGC 2 cut(s) 307, 2307
BstMAI GTCTC 6 cut(s) 129, 274, 452, 1208, 1711, 1836
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 6 cut(s) 304, 326, 419, 1434, 1496, 2401
BstNI CCWGG 1 cut(s) 1574
BstPAI GACNNNNGTC 2 cut(s) 266, 1240
BstSCI CCNGG 1 cut(s) 1572
BstSFI CTRYAG 1 cut(s) 2282
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 6 cut(s) 1319, 1763, 1887, 1898, 1901, 2330
BstV2I GAAGAC 2 cut(s) 1230, 1410
BstX2I RGATCY 1 cut(s) 2361
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 1 cut(s) 2361
BstZ17I GTATAC 2 cut(s) 611, 807
BsuI GTATCC 1 cut(s) 2005
BsuRI GGCC 2 cut(s) 1080, 1285
BtsCI GGATG 4 cut(s) 577, 1019, 1150, 2246
BtsI GCAGTG 3 cut(s) 559, 1444, 2382
BtsIMutI CAGTG 7 cut(s) 102, 270, 559, 1107, 1444, 1602, 2382
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 299
CciI TCATGA 2 cut(s) 1713, 2017
CfoI GCGC 2 cut(s) 307, 2307
Cfr13I GGNCC 3 cut(s) 1079, 1105, 1906
Csp6I GTAC 8 cut(s) 103, 452, 989, 1195, 1449, 1829, 1897, 2129
CviAII CATG 5 cut(s) 1526, 1549, 1714, 2018, 2049
CviQI GTAC 8 cut(s) 103, 452, 989, 1195, 1449, 1829, 1897, 2129
DraIII CACNNNGTG 1 cut(s) 1529
Eam1104I CTCTTC 4 cut(s) 220, 1149, 2118, 2295
EarI CTCTTC 4 cut(s) 220, 1149, 2118, 2295
Eco130I CCWWGG 1 cut(s) 810
Eco31I GGTCTC 2 cut(s) 274, 1836
Eco32I GATATC 1 cut(s) 1797
Eco47I GGWCC 2 cut(s) 1105, 1906
Eco57I CTGAAG 3 cut(s) 225, 815, 969
Eco88I CYCGRG 1 cut(s) 1832
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 1572
EcoRV GATATC 1 cut(s) 1797
EcoT14I CCWWGG 1 cut(s) 810
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 5 cut(s) 1529, 1552, 1717, 2021, 2052
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 1 cut(s) 913
FatI CATG 5 cut(s) 1525, 1548, 1713, 2017, 2048
FauI CCCGC 2 cut(s) 44, 349
FbaI TGATCA 1 cut(s) 1294
FblI GTMKAC 3 cut(s) 610, 806, 2197
Fnu4HI GCNGC 8 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890, 2319
FokI GGATG 4 cut(s) 584, 1006, 1157, 2253
Fsp4HI GCNGC 8 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890, 2319
FspBI CTAG 7 cut(s) 222, 1358, 1625, 1817, 1953, 1970, 2222
GlaI GCGC 2 cut(s) 306, 2306
GluI GCNGC 8 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890, 2319
GsuI CTGGAG 2 cut(s) 99, 1604
HaeII RGCGCY 2 cut(s) 308, 2308
HaeIII GGCC 2 cut(s) 1080, 1285
HhaI GCGC 2 cut(s) 307, 2307
Hin1II CATG 5 cut(s) 1529, 1552, 1717, 2021, 2052
Hin6I GCGC 2 cut(s) 305, 2305
HinP1I GCGC 2 cut(s) 305, 2305
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 2 cut(s) 665, 1509
HpaI GTTAAC 1 cut(s) 487
HphI GGTGA 5 cut(s) 714, 1541, 1855, 2002, 2286
Hpy166II GTNNAC 6 cut(s) 487, 611, 661, 807, 1105, 2198
Hpy188III TCNNGA 9 cut(s) 222, 285, 569, 752, 968, 1005, 1714, 2018, 2117
Hpy8I GTNNAC 6 cut(s) 487, 611, 661, 807, 1105, 2198
Hpy99I CGWCG 3 cut(s) 80, 520, 1465
HpyCH4III ACNGT 4 cut(s) 265, 1202, 1229, 1867
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 6 cut(s) 304, 326, 419, 1434, 1496, 2401
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 5 cut(s) 1529, 1552, 1717, 2021, 2052
HspAI GCGC 2 cut(s) 305, 2305
Ksp22I TGATCA 1 cut(s) 1294
KspAI GTTAAC 1 cut(s) 487
LguI GCTCTTC 1 cut(s) 2295
LmnI GCTCC 3 cut(s) 118, 958, 970
Lsp1109I GCAGC 6 cut(s) 1319, 1763, 1887, 1898, 1901, 2330
LweI GCATC 6 cut(s) 562, 1028, 1764, 1862, 2231, 2362
MaeI CTAG 7 cut(s) 222, 1358, 1625, 1817, 1953, 1970, 2222
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 1990
MbiI CCGCTC 1 cut(s) 1251
MfeI CAATTG 2 cut(s) 654, 1131
MflI RGATCY 1 cut(s) 2361
MhlI GDGCHC 1 cut(s) 640
MlyI GAGTC 5 cut(s) 131, 882, 1298, 1514, 1987
MmeI TCCRAC 2 cut(s) 1443, 1497
MseI TTAA 5 cut(s) 486, 866, 936, 1380, 1979
MslI CAYNNNNRTG 1 cut(s) 1804
MspA1I CMGCKG 3 cut(s) 119, 348, 1754
MspCI CTTAAG 1 cut(s) 1978
MspR9I CCNGG 1 cut(s) 1574
MunI CAATTG 2 cut(s) 654, 1131
Mva1269I GAATGC 5 cut(s) 598, 1345, 1358, 1584, 1954
MvaI CCWGG 1 cut(s) 1574
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 6 cut(s) 304, 326, 419, 1434, 1496, 2401
NlaIII CATG 5 cut(s) 1529, 1552, 1717, 2021, 2052
NlaIV GGNNCC 2 cut(s) 954, 1081
NmuCI GTSAC 1 cut(s) 1990
PaeR7I CTCGAG 1 cut(s) 1832
PagI TCATGA 2 cut(s) 1713, 2017
PciSI GCTCTTC 1 cut(s) 2295
PctI GAATGC 5 cut(s) 598, 1345, 1358, 1584, 1954
PfeI GAWTC 7 cut(s) 437, 467, 502, 719, 1025, 1323, 1369
PflMI CCANNNNNTGG 1 cut(s) 1512
PkrI GCNGC 8 cut(s) 7, 304, 1334, 1753, 1877, 1888, 1891, 2320
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 5 cut(s) 130, 881, 1297, 1514, 1987
PpsI GAGTC 5 cut(s) 130, 881, 1297, 1514, 1987
PshAI GACNNNNGTC 2 cut(s) 266, 1240
Psp6I CCWGG 1 cut(s) 1572
PspGI CCWGG 1 cut(s) 1572
PspN4I GGNNCC 2 cut(s) 954, 1081
PspPI GGNCC 3 cut(s) 1079, 1105, 1906
PspXI VCTCGAGB 1 cut(s) 1832
PsrI GAACNNNNNNTAC 4 cut(s) 756, 788, 2112, 2144
PstI CTGCAG 1 cut(s) 2286
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 2361
PvuI CGATCG 1 cut(s) 160
PvuII CAGCTG 2 cut(s) 119, 1754
RsaI GTAC 8 cut(s) 104, 453, 990, 1196, 1450, 1830, 1898, 2130
RsaNI GTAC 8 cut(s) 103, 452, 989, 1195, 1449, 1829, 1897, 2129
RseI CAYNNNNRTG 1 cut(s) 1804
SapI GCTCTTC 1 cut(s) 2295
SaqAI TTAA 5 cut(s) 486, 866, 936, 1380, 1979
SatI GCNGC 8 cut(s) 6, 303, 1333, 1752, 1876, 1887, 1890, 2319
Sau96I GGNCC 3 cut(s) 1079, 1105, 1906
ScaI AGTACT 3 cut(s) 453, 1450, 1830
SchI GAGTC 5 cut(s) 131, 882, 1298, 1514, 1987
ScrFI CCNGG 1 cut(s) 1574
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 6 cut(s) 562, 1028, 1764, 1862, 2231, 2362
SfcI CTRYAG 1 cut(s) 2282
Sfr274I CTCGAG 1 cut(s) 1832
SinI GGWCC 2 cut(s) 1105, 1906
SlaI CTCGAG 1 cut(s) 1832
SmiMI CAYNNNNRTG 1 cut(s) 1804
SmlI CTYRAG 5 cut(s) 455, 668, 1832, 1881, 1978
SmoI CTYRAG 5 cut(s) 455, 668, 1832, 1881, 1978
SpeI ACTAGT 2 cut(s) 1624, 1816
SsiI CCGC 5 cut(s) 51, 302, 348, 356, 1251
SspMI CTAG 7 cut(s) 222, 1358, 1625, 1817, 1953, 1970, 2222
StyD4I CCNGG 1 cut(s) 1572
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 4 cut(s) 265, 1202, 1229, 1867
TaiI ACGT 1 cut(s) 72
TatI WGTACW 6 cut(s) 102, 451, 1194, 1448, 1828, 2128
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 7 cut(s) 437, 467, 502, 719, 1025, 1323, 1369
Tru1I TTAA 5 cut(s) 486, 866, 936, 1380, 1979
Tru9I TTAA 5 cut(s) 486, 866, 936, 1380, 1979
TscAI CASTG 7 cut(s) 102, 270, 559, 1107, 1444, 1609, 2382
TseFI GTSAC 1 cut(s) 1990
TseI GCWGC 7 cut(s) 5, 1332, 1751, 1875, 1886, 1889, 2318
Tsp45I GTSAC 1 cut(s) 1990
TspRI CASTG 7 cut(s) 102, 270, 559, 1107, 1444, 1609, 2382
Van91I CCANNNNNTGG 1 cut(s) 1512
Vha464I CTTAAG 1 cut(s) 1978
VpaK11BI GGWCC 2 cut(s) 1105, 1906
XapI RAATTY 8 cut(s) 253, 544, 938, 1057, 1614, 1646, 1687, 2265
XbaI TCTAGA 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 2 cut(s) 328, 1513
XhoI CTCGAG 1 cut(s) 1832
XmiI GTMKAC 3 cut(s) 610, 806, 2197
XspI CTAG 7 cut(s) 222, 1358, 1625, 1817, 1953, 1970, 2222
ZrmI AGTACT 3 cut(s) 453, 1450, 1830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.