Rmu_ssc0000128.1_g000029

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000128.1
OG0000420
Physical Location & Seq
Reverse (-)
136925 .. 137365
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000128.1_g000029.1.cds

Sequence Viewer

Length: 441 bp
ctgaggaagagggacgatcgcattgagttgcctcatctagagaatacagttctggatgccttgacatcttatggttgtttggtcttggatagctttttgttccctcaaattctgctcaacatattctgccaatcgaaggaaaatgctctatcagtttggttctacattggaacaattgtagctcgagttctgccacatgcacatgctctttacagggctcacagcccggccaatgaccaatttgatgatttctcatacaattatccagctcctgtggcagatttatactccatagcttggaatgccatcattcctttagaaggtgtactgtttgctggtatcatatacttgcagcagcggtttggcggtcgttgcattgctcctggaaagctgcgagaggtgggtatatataagaaggtccctacagttcatgaagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

146

Amino Acids

16.56

Weight (kDa)

6.21

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AciI CCGC 2 cut(s) 358, 366
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 108
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 3 cut(s) 136, 297, 320
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 5 cut(s) 93, 182, 269, 296, 391
AluI AGCT 5 cut(s) 93, 182, 269, 296, 391
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 352, 355, 391
ApoI RAATTY 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 418
AsuC2I CCSGG 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 364, 367, 378
BccI CCATC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 384
BcnI CCSGG 1 cut(s) 227
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 3 cut(s) 353, 356, 392
BlsI GCNGC 3 cut(s) 354, 357, 393
Bme1390I CCNGG 2 cut(s) 227, 384
Bme18I GGWCC 1 cut(s) 418
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 2 cut(s) 227, 384
BmsI GCATC 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 297, 320
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 384
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 3 cut(s) 136, 297, 320
BseMI GCAATG 1 cut(s) 375
BseXI GCAGC 3 cut(s) 364, 367, 378
Bsh1285I CGRYCG 2 cut(s) 19, 370
BshFI GGCC 1 cut(s) 230
BsiEI CGRYCG 2 cut(s) 19, 370
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 2 cut(s) 26, 404
BslI CCNNNNNNNGG 3 cut(s) 136, 297, 320
BsmFI GGGAC 2 cut(s) 26, 404
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 2 cut(s) 358, 366
BspANI GGCC 1 cut(s) 230
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 375
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 49, 330, 427
Bst6I CTCTTC 2 cut(s) 2, 429
BstDEI CTNAG 1 cut(s) 2
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMCI CGRYCG 2 cut(s) 19, 370
BstMWI GCNNNNNNNGC 3 cut(s) 275, 302, 372
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 2 cut(s) 200, 206
BstSCI CCNGG 2 cut(s) 225, 382
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 3 cut(s) 364, 367, 378
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 326
CviAII CATG 3 cut(s) 197, 203, 431
CviJI RGCY 8 cut(s) 93, 182, 218, 225, 230, 269, 296, 391
CviKI_1 RGCY 8 cut(s) 93, 182, 218, 225, 230, 269, 296, 391
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 1 cut(s) 2
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 2 cut(s) 2, 429
EarI CTCTTC 2 cut(s) 2, 429
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 183
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 3 cut(s) 200, 206, 434
FaqI GGGAC 2 cut(s) 26, 404
FatI CATG 3 cut(s) 196, 202, 430
Fnu4HI GCNGC 3 cut(s) 353, 356, 392
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 353, 356, 392
FspBI CTAG 1 cut(s) 38
GluI GCNGC 3 cut(s) 353, 356, 392
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 227
Hin1II CATG 3 cut(s) 200, 206, 434
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 326
Hpy188III TCNNGA 3 cut(s) 38, 53, 431
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 130, 314, 409
HpyCH4III ACNGT 3 cut(s) 49, 330, 427
HpyCH4V TGCA 3 cut(s) 200, 352, 375
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 302, 372
HpyF3I CTNAG 1 cut(s) 2
Hsp92II CATG 3 cut(s) 200, 206, 434
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 274, 385
LpnPI CCDG 8 cut(s) 38, 199, 240, 279, 285, 321, 369, 396
Lsp1109I GCAGC 3 cut(s) 364, 367, 378
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 38
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 4 cut(s) 108, 174, 239, 259
MnlI CCTC 4 cut(s) 3, 42, 114, 391
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 227, 384
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 275, 302, 372
NciI CCSGG 1 cut(s) 227
NdeII GATC 1 cut(s) 16
NlaIII CATG 3 cut(s) 200, 206, 434
NlaIV GGNNCC 1 cut(s) 420
NspI RCATGY 2 cut(s) 200, 206
PaeR7I CTCGAG 1 cut(s) 183
PagI TCATGA 1 cut(s) 430
PctI GAATGC 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 3 cut(s) 354, 357, 393
Ple19I CGATCG 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 1 cut(s) 418
PspPPI RGGWCCY 1 cut(s) 418
PspXI VCTCGAGB 1 cut(s) 183
PsrI GAACNNNNNNTAC 2 cut(s) 171, 203
PstNI CAGNNNCTG 1 cut(s) 272
PvuI CGATCG 1 cut(s) 19
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 201
SatI GCNGC 3 cut(s) 353, 356, 392
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 227, 384
SduI GDGCHC 1 cut(s) 220
SetI ASST 8 cut(s) 95, 184, 271, 298, 325, 393, 402, 420
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 418
SlaI CTCGAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 4 cut(s) 108, 174, 239, 259
SsiI CCGC 2 cut(s) 358, 366
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 225, 382
TaaI ACNGT 3 cut(s) 49, 330, 427
TaqI TCGA 2 cut(s) 134, 184
TasI AATT 4 cut(s) 108, 174, 239, 259
TatI WGTACW 1 cut(s) 325
TseI GCWGC 3 cut(s) 352, 355, 391
TspDTI ATGAA 1 cut(s) 419
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 418
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 1 cut(s) 108
XbaI TCTAGA 1 cut(s) 37
XceI RCATGY 2 cut(s) 200, 206
XhoI CTCGAG 1 cut(s) 183
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.