FvH4_3g20291

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000420
Physical Location & Seq
Reverse (-)
13330348 .. 13331333
986 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20291.t1

Sequence Viewer

Length: 849 bp
ATGTGGTACAAACTCCCAAAGCCTCTCATATTCCTTTTTGTTTTCACCACATTTTCTTTGAACTTAGTTTTATCCTCTGCTACACATCATAAACTCTCTTATACTGATCATTGTGCTTCAACTGTTCCTGTATCTACCCCAACAAGATATGCCAGTTTTGATCCCTCTGTCCGTAGCCATACAGGTTACTATGCTGGTGGTGGCAGCGGCAATGGAATTCGTAGTCCAAAACCATCATATCTACCTAATCACATGCCCCCAAATCTTATCGAGTTCAATGCCTGGAGTGTTAAAGAAACTGATGTACAAGACTTGTTCATGGTTCAGGGAAGCCTTCAATTTCAACCAGACACTGACCACATGGGAAATGTCGCAAATCAGCTGCCCCAAACTCAAATAAGATTTGCACTCAGTGGATTCTGGTCAGAACTATCTGGAAGGCTTTGCATGGTTGGATCAGGTTCTATTTACTCGACGCAAGGTGATCTGATCAACGATGTTCCTGCTCTTTTCAAGTTGCAGAATCTCTTGAATTTCACTAGTTACACTTTGGTTTCAAATGAATCTGATGGTAACAGGTCTCCCGGTGAAAGTGGTGTTCCTGCAGGAGTAGTACCAATATTTTATCTCCAATATCCGAGCCATTGCCTTTCTGCATATAATTGCAGTACACCACTTTCTGGTTCTGGAATTTTCCCTAGCTTTGTGGCACTAGGGGGTATTGAGTGCTCGGAAGATAACCGAAGGTTGAGAGTTCTGATAGAATTCGCAGACTGGAGAAAACACTGGTATATGATGACTTTCAATCCCAATGCAACTTTGGTTGGGGAGGGGTCATGGAATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

283

Amino Acids

31.16

Weight (kDa)

6.22

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 34 - 169 6.5e-14 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 680
AciI CCGC 1 cut(s) 207
AclWI GGATC 2 cut(s) 155, 463
AcsI RAATTY 4 cut(s) 216, 532, 690, 764
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 4 cut(s) 8, 306, 615, 670
AfiI CCNNNNNNNGG 1 cut(s) 680
AgsI TTSAA 9 cut(s) 61, 120, 277, 338, 344, 514, 532, 558, 805
AhlI ACTAGT 1 cut(s) 539
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 2 cut(s) 382, 702
AluI AGCT 2 cut(s) 382, 702
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 2 cut(s) 155, 463
AlwNI CAGNNNCTG 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 204, 382
ApoI RAATTY 4 cut(s) 216, 532, 690, 764
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 3 cut(s) 37, 494, 599
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 2 cut(s) 216, 369
BccI CCATC 2 cut(s) 241, 563
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 485, 519
BciT130I CCWGG 1 cut(s) 283
BclI TGATCA 2 cut(s) 106, 489
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 585
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 3 cut(s) 540, 699, 713
BfmI CTRYAG 1 cut(s) 603
BisI GCNGC 3 cut(s) 205, 208, 383
BlsI GCNGC 3 cut(s) 206, 209, 384
Bme1390I CCNGG 2 cut(s) 283, 585
BmrFI CCNGG 2 cut(s) 283, 585
BpmI CTGGAG 2 cut(s) 304, 796
BpuMI CCSGG 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 585
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse1I ACTGG 3 cut(s) 153, 779, 791
Bse3DI GCAATG 2 cut(s) 217, 643
BseBI CCWGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMI GCAATG 2 cut(s) 217, 643
BseMII CTCAG 1 cut(s) 424
BseNI ACTGG 3 cut(s) 153, 779, 791
BseXI GCAGC 2 cut(s) 216, 369
BsiHKAI GWGCWC 1 cut(s) 731
BsiSI CCGG 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 680
BsmAI GTCTC 1 cut(s) 585
BsmI GAATGC 1 cut(s) 847
Bso31I GGTCTC 1 cut(s) 585
Bsp1286I GDGCHC 1 cut(s) 731
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 5 cut(s) 106, 160, 455, 484, 489
BspACI CCGC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 423
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 2 cut(s) 155, 463
BspTNI GGTCTC 1 cut(s) 585
BsrDI GCAATG 2 cut(s) 217, 643
BsrGI TGTACA 1 cut(s) 304
BsrI ACTGG 3 cut(s) 153, 779, 791
BssMI GATC 5 cut(s) 106, 160, 455, 484, 489
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 304
BstDEI CTNAG 2 cut(s) 64, 410
BstKTI GATC 5 cut(s) 109, 163, 458, 487, 492
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 5 cut(s) 106, 160, 455, 484, 489
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 281, 583
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 2 cut(s) 216, 369
BtsIMutI CAGTG 3 cut(s) 351, 418, 784
CaiI CAGNNNCTG 1 cut(s) 353
CseI GACGC 1 cut(s) 484
Csp6I GTAC 4 cut(s) 7, 305, 614, 669
CviAII CATG 5 cut(s) 253, 319, 361, 448, 837
CviJI RGCY 7 cut(s) 22, 177, 333, 382, 442, 642, 702
CviKI_1 RGCY 7 cut(s) 22, 177, 333, 382, 442, 642, 702
CviQI GTAC 4 cut(s) 7, 305, 614, 669
DdeI CTNAG 2 cut(s) 64, 410
DpnI GATC 5 cut(s) 108, 162, 457, 486, 491
DpnII GATC 5 cut(s) 106, 160, 455, 484, 489
DraIII CACNNNGTG 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 585
EcoRI GAATTC 2 cut(s) 216, 764
EcoRII CCWGG 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 847
FaeI CATG 5 cut(s) 256, 322, 364, 451, 840
FatI CATG 5 cut(s) 252, 318, 360, 447, 836
FbaI TGATCA 2 cut(s) 106, 489
Fnu4HI GCNGC 3 cut(s) 205, 208, 383
Fsp4HI GCNGC 3 cut(s) 205, 208, 383
FspBI CTAG 3 cut(s) 540, 699, 713
GluI GCNGC 3 cut(s) 205, 208, 383
GsuI CTGGAG 2 cut(s) 304, 796
HapII CCGG 1 cut(s) 585
HgaI GACGC 1 cut(s) 484
Hin1II CATG 5 cut(s) 256, 322, 364, 451, 840
HinfI GANTC 3 cut(s) 417, 523, 563
HpaII CCGG 1 cut(s) 585
HphI GGTGA 3 cut(s) 37, 494, 599
Hpy166II GTNNAC 1 cut(s) 671
Hpy188I TCNGA 6 cut(s) 427, 489, 568, 639, 733, 759
Hpy188III TCNNGA 3 cut(s) 435, 529, 687
Hpy8I GTNNAC 1 cut(s) 671
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 344, 432, 738
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 8 cut(s) 407, 447, 520, 605, 656, 666, 815, 845
HpyF3I CTNAG 2 cut(s) 64, 410
Hsp92II CATG 5 cut(s) 256, 322, 364, 451, 840
Ksp22I TGATCA 2 cut(s) 106, 489
Kzo9I GATC 5 cut(s) 106, 160, 455, 484, 489
Lsp1109I GCAGC 2 cut(s) 216, 369
MaeI CTAG 3 cut(s) 540, 699, 713
MaeIII GTNAC 3 cut(s) 185, 542, 572
MalI GATC 5 cut(s) 108, 162, 457, 486, 491
MboI GATC 5 cut(s) 106, 160, 455, 484, 489
MboII GAAGA 1 cut(s) 746
MhlI GDGCHC 1 cut(s) 731
MluCI AATT 6 cut(s) 216, 338, 532, 661, 690, 764
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 4 cut(s) 33, 85, 175, 823
Mph1103I ATGCAT 1 cut(s) 847
MseI TTAA 1 cut(s) 291
MspA1I CMGCKG 2 cut(s) 207, 382
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 2 cut(s) 283, 585
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 1 cut(s) 283
NciI CCSGG 1 cut(s) 585
NdeII GATC 5 cut(s) 106, 160, 455, 484, 489
NlaIII CATG 5 cut(s) 256, 322, 364, 451, 840
NsiI ATGCAT 1 cut(s) 847
NspI RCATGY 1 cut(s) 256
PctI GAATGC 1 cut(s) 847
PfeI GAWTC 3 cut(s) 417, 523, 563
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 3 cut(s) 206, 209, 384
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 4 cut(s) 8, 306, 615, 670
RsaNI GTAC 4 cut(s) 7, 305, 614, 669
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 205, 208, 383
Sau3AI GATC 5 cut(s) 106, 160, 455, 484, 489
SbfI CCTGCAGG 1 cut(s) 607
ScrFI CCNGG 2 cut(s) 283, 585
SdaI CCTGCAGG 1 cut(s) 607
SduI GDGCHC 1 cut(s) 731
SetI ASST 8 cut(s) 187, 247, 384, 463, 484, 581, 704, 749
SfcI CTRYAG 1 cut(s) 603
SpeI ACTAGT 1 cut(s) 539
Sse8387I CCTGCAGG 1 cut(s) 607
Sse9I AATT 6 cut(s) 216, 338, 532, 661, 690, 764
SsiI CCGC 1 cut(s) 207
SspI AATATT 1 cut(s) 621
SspMI CTAG 3 cut(s) 540, 699, 713
StyD4I CCNGG 2 cut(s) 281, 583
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 2 cut(s) 270, 473
TasI AATT 6 cut(s) 216, 338, 532, 661, 690, 764
TatI WGTACW 2 cut(s) 304, 668
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 3 cut(s) 417, 523, 563
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 3 cut(s) 358, 418, 791
TseI GCWGC 2 cut(s) 204, 382
TspDTI ATGAA 2 cut(s) 307, 576
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 3 cut(s) 358, 418, 791
Van91I CCANNNNNTGG 1 cut(s) 680
XapI RAATTY 4 cut(s) 216, 532, 690, 764
XceI RCATGY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XspI CTAG 3 cut(s) 540, 699, 713
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.