Rmu_co8445509.1_g000001

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8445509.1
OG0000420
Physical Location & Seq
Reverse (-)
2 .. 1125
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8445509.1_g000001.1.cds

Sequence Viewer

Length: 1124 bp
atgatcaggtcaaaaattcagttggcttccaatgctgggatattagtgaaactcatgtccaaggcttgtttaaggtcgaggccggcaactctagagtttcaagtaaccaatatgattgagtttcaaagcatgccgccaaaaataattccaggttcggtttcatttagactcaatggattctggtcaaaatcttctgggaagctctgcatggttggatcatcgtccatttactcgaaacaaggtaatccacttgttgttcttaagctgtataatctcatcatgaataacactagtgttacaagtttgattagtggaaccattgagaatgtcatgatgatatctgagaatgatcccaagtctttgggaccaatctctattttgatgtttcctcgcatgaactacgcgtacactttggtctcaaatagtactaatagcagttgctctagtggaagtgaagataccccacgctctttacatgttgagagattttgttcactactatcatcaatagtactaaatcatgactttccactcaaattttcaagccactgtatcactccagagaactgcattccaatttctatgtctaatttacctcgggctgtgttgtttaaggacattgcatgctcggaggataatcgaagggtgagagttctggtggaattttctgatggtaggctaaaccagtgcccaacgctcttcaatcctaatacaactttagttggggaaggctcatgggatgcaaagaagaatcagctatgtgttgttgcttgtcgattcttgaatacaacaaattctttgaataatactaatgtgggtgattgttcaacaagattgagcttgagaattcctgcaacagggacaattggaagtacgagcagcattgtggggcatatttggagcaccaaaactgtgacagagttgggctactttgaaaagatcacatttgcaagtcgggactgtggttgtcgcaagggtctacttccaggccagacatatgagtacactaaaatggagaaagtaacaaacttgtgctcgagaaagaagactgcaaatgacatggccagcatttaccctaatccatttttgcatatcacgagtttcattatgcatgccgaaaattc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

375

Amino Acids

41.37

Weight (kDa)

9.17

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 979
AccII CGCG 1 cut(s) 404
AciI CCGC 1 cut(s) 134
AclWI GGATC 2 cut(s) 223, 344
AcoI YGGCCR 1 cut(s) 1062
AcsI RAATTY 6 cut(s) 15, 536, 662, 793, 846, 1120
AfaI GTAC 5 cut(s) 407, 427, 513, 874, 1004
AfiI CCNNNNNNNGG 2 cut(s) 36, 857
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 2 cut(s) 402, 475
AgsI TTSAA 8 cut(s) 101, 125, 543, 703, 784, 802, 828, 935
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 2 cut(s) 148, 985
AluBI AGCT 4 cut(s) 202, 265, 757, 840
AluI AGCT 4 cut(s) 202, 265, 757, 840
Alw21I GWGCWC 2 cut(s) 905, 1037
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 2 cut(s) 223, 344
Ama87I CYCGRG 2 cut(s) 597, 1036
AoxI GGCC 3 cut(s) 80, 988, 1062
ApeKI GCWGC 1 cut(s) 879
ApoI RAATTY 6 cut(s) 15, 536, 662, 793, 846, 1120
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 658, 830
AvaI CYCGRG 2 cut(s) 597, 1036
AvaII GGWCC 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 692
BalI TGGCCA 1 cut(s) 1064
BarI GAAGNNNNNNTAC 2 cut(s) 442, 474
BauI CACGAG 1 cut(s) 1096
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 2 cut(s) 905, 1037
BbvI GCAGC 1 cut(s) 891
BccI CCATC 1 cut(s) 665
BciT130I CCWGG 2 cut(s) 150, 987
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 421
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 3 cut(s) 92, 291, 444
BfrI CTTAAG 1 cut(s) 260
BisI GCNGC 2 cut(s) 134, 880
BlsI GCNGC 2 cut(s) 135, 881
BmcAI AGTACT 2 cut(s) 427, 513
Bme1390I CCNGG 2 cut(s) 150, 987
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 2 cut(s) 597, 1036
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 316, 366
BmrFI CCNGG 2 cut(s) 150, 987
BmsI GCATC 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 1052
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 862
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 60, 596
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 857
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 685
Bse3DI GCAATG 1 cut(s) 618
BseBI CCWGG 2 cut(s) 150, 987
BseDI CCNNGG 2 cut(s) 60, 596
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 2 cut(s) 36, 857
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 685
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 1 cut(s) 891
BseYI CCCAGC 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 3 cut(s) 82, 990, 1064
BsiHKAI GWGCWC 2 cut(s) 905, 1037
BsiHKCI CYCGRG 2 cut(s) 597, 1036
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 3 cut(s) 378, 874, 971
BslI CCNNNNNNNGG 2 cut(s) 36, 857
BsmAI GTCTC 1 cut(s) 421
BsmFI GGGAC 3 cut(s) 378, 874, 971
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 3 cut(s) 82, 990, 1064
Bso31I GGTCTC 1 cut(s) 421
BsoBI CYCGRG 2 cut(s) 597, 1036
Bsp1286I GDGCHC 3 cut(s) 692, 905, 1037
Bsp143I GATC 4 cut(s) 3, 215, 349, 939
BspACI CCGC 1 cut(s) 134
BspANI GGCC 3 cut(s) 82, 990, 1064
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 1 cut(s) 404
BspHI TCATGA 3 cut(s) 279, 330, 520
BspLI GGNNCC 2 cut(s) 316, 366
BspPI GGATC 2 cut(s) 223, 344
BspQI GCTCTTC 1 cut(s) 704
BspTI CTTAAG 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 685
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 60, 596
BssMI GATC 4 cut(s) 3, 215, 349, 939
BssSI CACGAG 1 cut(s) 1096
BssT1I CCWWGG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 1096
Bst2UI CCWGG 2 cut(s) 150, 987
Bst4CI ACNGT 3 cut(s) 551, 913, 962
Bst6I CTCTTC 1 cut(s) 704
BstAFI CTTAAG 1 cut(s) 260
BstC8I GCNNGC 5 cut(s) 84, 131, 625, 1066, 1113
BstDEI CTNAG 1 cut(s) 342
BstENI CCTNNNNNAGG 1 cut(s) 855
BstF5I GGATG 1 cut(s) 745
BstFNI CGCG 1 cut(s) 404
BstKTI GATC 4 cut(s) 6, 218, 352, 942
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 4 cut(s) 3, 215, 349, 939
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 2 cut(s) 150, 987
BstNSI RCATGY 4 cut(s) 133, 479, 627, 1115
BstSCI CCNGG 2 cut(s) 148, 985
BstSLI GKGCMC 1 cut(s) 692
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 891
BstV2I GAAGAC 1 cut(s) 1052
BstXI CCANNNNNNTGG 1 cut(s) 361
BsuRI GGCC 3 cut(s) 82, 990, 1064
BtsCI GGATG 1 cut(s) 745
BtsIMutI CAGTG 2 cut(s) 547, 692
Cac8I GCNNGC 5 cut(s) 84, 131, 625, 1066, 1113
CciI TCATGA 3 cut(s) 279, 330, 520
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 5 cut(s) 406, 426, 512, 873, 1003
CviQI GTAC 5 cut(s) 406, 426, 512, 873, 1003
DdeI CTNAG 1 cut(s) 342
DpnI GATC 4 cut(s) 5, 217, 351, 941
DpnII GATC 4 cut(s) 3, 215, 349, 939
EaeI YGGCCR 1 cut(s) 1062
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 365
Eco88I CYCGRG 2 cut(s) 597, 1036
EcoNI CCTNNNNNAGG 1 cut(s) 855
EcoRI GAATTC 1 cut(s) 846
EcoRII CCWGG 2 cut(s) 148, 985
EcoRV GATATC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 1113
ErhI CCWWGG 1 cut(s) 60
FaqI GGGAC 3 cut(s) 378, 874, 971
FauNDI CATATG 1 cut(s) 997
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 979
Fnu4HI GCNGC 2 cut(s) 134, 880
FokI GGATG 1 cut(s) 752
Fsp4HI GCNGC 2 cut(s) 134, 880
FspBI CTAG 3 cut(s) 92, 291, 444
GluI GCNGC 2 cut(s) 134, 880
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 3 cut(s) 82, 990, 1064
HapII CCGG 1 cut(s) 83
HinfI GANTC 4 cut(s) 168, 177, 751, 777
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 658, 830
Hpy166II GTNNAC 4 cut(s) 408, 494, 980, 1005
Hpy188I TCNGA 3 cut(s) 343, 631, 670
Hpy188III TCNNGA 9 cut(s) 92, 280, 331, 521, 560, 781, 956, 1038, 1096
Hpy8I GTNNAC 4 cut(s) 408, 494, 980, 1005
HpyAV CCTTC 2 cut(s) 636, 722
HpyCH4III ACNGT 3 cut(s) 551, 913, 962
HpyCH4V TGCA 9 cut(s) 207, 570, 623, 743, 854, 950, 1052, 1090, 1111
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 342
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 215, 349, 939
LguI GCTCTTC 1 cut(s) 704
LmnI GCTCC 1 cut(s) 900
Lsp1109I GCAGC 1 cut(s) 891
LweI GCATC 1 cut(s) 730
MaeI CTAG 3 cut(s) 92, 291, 444
MaeIII GTNAC 4 cut(s) 103, 295, 913, 1021
MalI GATC 4 cut(s) 5, 217, 351, 941
MboI GATC 4 cut(s) 3, 215, 349, 939
MboII GAAGA 5 cut(s) 183, 467, 691, 760, 1057
MfeI CAATTG 1 cut(s) 864
MhlI GDGCHC 3 cut(s) 692, 905, 1037
MlsI TGGCCA 1 cut(s) 1064
MluI ACGCGT 1 cut(s) 402
MluNI TGGCCA 1 cut(s) 1064
MlyI GAGTC 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 72, 399, 606, 625
Mox20I TGGCCA 1 cut(s) 1064
Mph1103I ATGCAT 1 cut(s) 1113
MroNI GCCGGC 1 cut(s) 82
MscI TGGCCA 1 cut(s) 1064
MseI TTAA 3 cut(s) 71, 261, 612
MslI CAYNNNNRTG 1 cut(s) 1010
Msp20I TGGCCA 1 cut(s) 1064
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 150, 987
MunI CAATTG 1 cut(s) 864
Mva1269I GAATGC 1 cut(s) 570
MvaI CCWGG 2 cut(s) 150, 987
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 32
NaeI GCCGGC 1 cut(s) 84
NdeI CATATG 1 cut(s) 997
NdeII GATC 4 cut(s) 3, 215, 349, 939
NgoMIV GCCGGC 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 316, 366
NmuCI GTSAC 1 cut(s) 913
NsiI ATGCAT 1 cut(s) 1113
NspI RCATGY 4 cut(s) 133, 479, 627, 1115
PaeI GCATGC 3 cut(s) 133, 627, 1115
PaeR7I CTCGAG 1 cut(s) 1036
PagI TCATGA 3 cut(s) 279, 330, 520
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 704
PctI GAATGC 1 cut(s) 570
PdiI GCCGGC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 177, 751, 777
PkrI GCNGC 2 cut(s) 135, 881
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PscI ACATGT 1 cut(s) 475
Psp6I CCWGG 2 cut(s) 148, 985
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 2 cut(s) 148, 985
PspN4I GGNNCC 2 cut(s) 316, 366
PspPI GGNCC 1 cut(s) 365
PsrI GAACNNNNNNTAC 2 cut(s) 389, 421
RsaI GTAC 5 cut(s) 407, 427, 513, 874, 1004
RsaNI GTAC 5 cut(s) 406, 426, 512, 873, 1003
RseI CAYNNNNRTG 1 cut(s) 1010
SapI GCTCTTC 1 cut(s) 704
SaqAI TTAA 3 cut(s) 71, 261, 612
SatI GCNGC 2 cut(s) 134, 880
Sau3AI GATC 4 cut(s) 3, 215, 349, 939
Sau96I GGNCC 1 cut(s) 365
ScaI AGTACT 2 cut(s) 427, 513
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 150, 987
SduI GDGCHC 3 cut(s) 692, 905, 1037
SetI ASST 9 cut(s) 11, 77, 154, 204, 244, 267, 598, 759, 842
SfaNI GCATC 1 cut(s) 730
Sfr274I CTCGAG 1 cut(s) 1036
SinI GGWCC 1 cut(s) 365
SlaI CTCGAG 1 cut(s) 1036
SmiMI CAYNNNNRTG 1 cut(s) 1010
SmlI CTYRAG 3 cut(s) 260, 841, 1036
SmoI CTYRAG 3 cut(s) 260, 841, 1036
SpeI ACTAGT 1 cut(s) 290
SphI GCATGC 3 cut(s) 133, 627, 1115
SsiI CCGC 1 cut(s) 134
SspMI CTAG 3 cut(s) 92, 291, 444
StyD4I CCNGG 2 cut(s) 148, 985
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 551, 913, 962
TaqI TCGA 5 cut(s) 77, 233, 640, 775, 1037
TatI WGTACW 3 cut(s) 425, 511, 1002
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 3 cut(s) 177, 751, 777
Tru1I TTAA 3 cut(s) 71, 261, 612
Tru9I TTAA 3 cut(s) 71, 261, 612
TscAI CASTG 2 cut(s) 554, 692
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 1 cut(s) 879
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 4 cut(s) 150, 296, 410, 1093
TspRI CASTG 2 cut(s) 554, 692
Vha464I CTTAAG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 365
XagI CCTNNNNNAGG 1 cut(s) 855
XapI RAATTY 6 cut(s) 15, 536, 662, 793, 846, 1120
XbaI TCTAGA 1 cut(s) 91
XceI RCATGY 4 cut(s) 133, 479, 627, 1115
XhoI CTCGAG 1 cut(s) 1036
XmiI GTMKAC 1 cut(s) 979
XspI CTAG 3 cut(s) 92, 291, 444
ZrmI AGTACT 2 cut(s) 427, 513
Zsp2I ATGCAT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.