Rroxscaffold_1G00046060

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000420
Physical Location & Seq
Forward (+)
65209692 .. 65210564
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046060.1

Sequence Viewer

Length: 873 bp
ATGGAGAAAGTAACAAAGTTGTGCTCGAGAAAGAAAACTGCTAATGATAAGGCCAACATTTACCCAAATCCATTTTTCCATGTCACGAGTTTCATTATTCATGCCGAAAATTCTGAAGGACAAGTTGGATTTGGCAATTGTGTTCCTCTCTCTGTTCACAATAGTATCTACCGGCCTGATTGGTCTTCAGGGGAAGATGCATGTGCACCTGAAAGCAATCAAGAATACTTTGTAGCTCCTCTGACATACAGCTACAACCACAGCAATCCCATCAAGATTAGCTACAAAATAGATCTCCAACTTCAATCTAATCCAAAGTGGTGGGGCAGACAGTCTGTTAAATATGAAATGCATATCAATGCTGAAGGGATCTATGATGGTACAGAAGGAAGCCTTTGCATGGTAGGCTGCCGCAAACTTGGCTCAAACAGGCAGCAGGCAACAAATGATTCGATAGATTGTGAGATTCTTGTCCAATTTCAGTTCCCAGCAACAAATGCAAAGGATTTGCATCATATCAAAGGAAGCATTGAGAGCACGCGAAAGAAGTCCGATCCTCTCCATTTTGAACGCTTGGATTTCTCTACAGCTGCCAAGGATGATGAAGAAAAGCGATCCATTTGGAAGATGGATGGGAAGCTAACCTTGGTTCTTATATCAACCACACTTGCATGTGTTTTTGCTGCATTACAACTCTTCCATGTGAAAAGAGATCCTGAAGTCATTTCCTCTATTTCCATCTTAATGCTTCTAATACTAACCCTTGGCTACATGTTACCTCTTGGGATTAATTTTGAAGCCATGTTCATGAATAATATCAACCATCAAACTGTGCACCTTGGAGGGGCGGATGGCTTGAATTTAATGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

290

Amino Acids

32.68

Weight (kDa)

6.59

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 6 - 193 5.9e-31 DUF2921 lipocalin-like domain
DUF2921 PF11145 204 - 273 5.2e-15 Transmembrane E3 ligase/DUF2921 transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 541
AciI CCGC 2 cut(s) 412, 848
AclWI GGATC 4 cut(s) 377, 548, 609, 707
AcsI RAATTY 2 cut(s) 109, 859
AcuI CTGAAG 4 cut(s) 135, 171, 384, 738
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 2 cut(s) 400, 844
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 4 cut(s) 305, 569, 797, 859
AjuI GAANNNNNNNTTGG 4 cut(s) 108, 140, 629, 661
AluBI AGCT 5 cut(s) 236, 252, 282, 590, 640
AluI AGCT 5 cut(s) 236, 252, 282, 590, 640
Alw21I GWGCWC 4 cut(s) 26, 208, 539, 837
Alw44I GTGCAC 2 cut(s) 204, 833
AlwI GGATC 4 cut(s) 377, 548, 609, 707
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 51, 173
ApaLI GTGCAC 2 cut(s) 204, 833
ApeKI GCWGC 4 cut(s) 408, 433, 590, 683
ApoI RAATTY 2 cut(s) 109, 859
AseI ATTAAT 1 cut(s) 789
AvaI CYCGRG 1 cut(s) 25
BaeGI GKGCMC 2 cut(s) 208, 837
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BauI CACGAG 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 4 cut(s) 26, 208, 539, 837
BbvI GCAGC 4 cut(s) 395, 445, 577, 670
BccI CCATC 7 cut(s) 278, 371, 622, 626, 746, 831, 845
BfmI CTRYAG 1 cut(s) 585
BglII AGATCT 1 cut(s) 292
BisI GCNGC 5 cut(s) 409, 412, 434, 591, 684
BlsI GCNGC 5 cut(s) 410, 413, 435, 592, 685
BmeT110I CYCGRG 1 cut(s) 25
BmsI GCATC 2 cut(s) 187, 520
BpiI GAAGAC 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 4 cut(s) 594, 645, 763, 838
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 844
Bse118I RCCGGY 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 4 cut(s) 594, 645, 763, 838
BseGI GGATG 3 cut(s) 604, 637, 856
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 400, 844
BseRI GAGGAG 1 cut(s) 228
BseSI GKGCMC 2 cut(s) 208, 837
BseXI GCAGC 4 cut(s) 395, 445, 577, 670
BseYI CCCAGC 1 cut(s) 487
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 2 cut(s) 53, 175
BsiHKAI GWGCWC 4 cut(s) 26, 208, 539, 837
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 400, 844
BsnI GGCC 2 cut(s) 53, 175
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 4 cut(s) 26, 208, 539, 837
Bsp143I GATC 5 cut(s) 292, 369, 553, 614, 712
BspACI CCGC 2 cut(s) 412, 848
BspANI GGCC 2 cut(s) 53, 175
BspFNI CGCG 1 cut(s) 541
BspHI TCATGA 1 cut(s) 807
BspPI GGATC 4 cut(s) 377, 548, 609, 707
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 4 cut(s) 594, 645, 763, 838
BssMI GATC 5 cut(s) 292, 369, 553, 614, 712
BssSI CACGAG 1 cut(s) 85
BssT1I CCWWGG 4 cut(s) 594, 645, 763, 838
Bst2BI CACGAG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 333, 832
Bst6I CTCTTC 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 438, 539
BstF5I GGATG 3 cut(s) 604, 637, 856
BstFNI CGCG 1 cut(s) 541
BstKTI GATC 5 cut(s) 295, 372, 556, 617, 715
BstMBI GATC 5 cut(s) 292, 369, 553, 614, 712
BstMWI GCNNNNNNNGC 4 cut(s) 405, 420, 497, 534
BstNSI RCATGY 3 cut(s) 204, 675, 775
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 2 cut(s) 208, 837
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 395, 445, 577, 670
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 3 cut(s) 292, 369, 712
BstXI CCANNNNNNTGG 1 cut(s) 321
BstYI RGATCY 3 cut(s) 292, 369, 712
BsuRI GGCC 2 cut(s) 53, 175
BtsCI GGATG 3 cut(s) 604, 637, 856
Cac8I GCNNGC 2 cut(s) 438, 539
CciI TCATGA 1 cut(s) 807
Cfr10I RCCGGY 1 cut(s) 171
Csp6I GTAC 1 cut(s) 381
CviAII CATG 9 cut(s) 80, 101, 201, 400, 672, 701, 772, 802, 808
CviQI GTAC 1 cut(s) 381
DpnI GATC 5 cut(s) 294, 371, 555, 616, 714
DpnII GATC 5 cut(s) 292, 369, 553, 614, 712
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
EciI GGCGGA 1 cut(s) 863
Eco130I CCWWGG 4 cut(s) 594, 645, 763, 838
Eco57I CTGAAG 4 cut(s) 135, 171, 384, 738
Eco88I CYCGRG 1 cut(s) 25
EcoT14I CCWWGG 4 cut(s) 594, 645, 763, 838
EcoT22I ATGCAT 2 cut(s) 202, 354
ErhI CCWWGG 4 cut(s) 594, 645, 763, 838
FaeI CATG 9 cut(s) 83, 104, 204, 403, 675, 704, 775, 805, 811
FalI AAGNNNNNCTT 4 cut(s) 378, 410, 629, 661
FatI CATG 9 cut(s) 79, 100, 200, 399, 671, 700, 771, 801, 807
Fnu4HI GCNGC 5 cut(s) 409, 412, 434, 591, 684
FokI GGATG 3 cut(s) 611, 644, 863
Fsp4HI GCNGC 5 cut(s) 409, 412, 434, 591, 684
GluI GCNGC 5 cut(s) 409, 412, 434, 591, 684
GsaI CCCAGC 1 cut(s) 491
HaeIII GGCC 2 cut(s) 53, 175
HapII CCGG 1 cut(s) 172
Hin1II CATG 9 cut(s) 83, 104, 204, 403, 675, 704, 775, 805, 811
HinfI GANTC 2 cut(s) 449, 466
HpaII CCGG 1 cut(s) 172
Hpy166II GTNNAC 3 cut(s) 157, 206, 835
Hpy188I TCNGA 3 cut(s) 115, 243, 553
Hpy188III TCNNGA 6 cut(s) 27, 85, 221, 274, 716, 808
Hpy8I GTNNAC 3 cut(s) 157, 206, 835
HpyAV CCTTC 3 cut(s) 110, 359, 380
HpyCH4III ACNGT 2 cut(s) 333, 832
HpyCH4V TGCA 9 cut(s) 200, 206, 352, 399, 500, 511, 671, 686, 835
HpyF10VI GCNNNNNNNGC 4 cut(s) 405, 420, 497, 534
Hsp92II CATG 9 cut(s) 83, 104, 204, 403, 675, 704, 775, 805, 811
Kzo9I GATC 5 cut(s) 292, 369, 553, 614, 712
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 174, 185, 189, 222, 415, 422, 501, 729
Lsp1109I GCAGC 4 cut(s) 395, 445, 577, 670
LweI GCATC 2 cut(s) 187, 520
MaeIII GTNAC 3 cut(s) 10, 82, 774
MalI GATC 5 cut(s) 294, 371, 555, 616, 714
MboI GATC 5 cut(s) 292, 369, 553, 614, 712
MboII GAAGA 5 cut(s) 177, 206, 617, 637, 688
MfeI CAATTG 1 cut(s) 136
MflI RGATCY 3 cut(s) 292, 369, 712
MhlI GDGCHC 4 cut(s) 26, 208, 539, 837
MluCI AATT 5 cut(s) 109, 136, 476, 790, 859
MmeI TCCRAC 2 cut(s) 106, 322
MnlI CCTC 6 cut(s) 156, 249, 567, 739, 789, 836
Mph1103I ATGCAT 2 cut(s) 202, 354
MseI TTAA 4 cut(s) 339, 743, 789, 863
MslI CAYNNNNRTG 4 cut(s) 357, 670, 743, 806
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 1 cut(s) 172
MunI CAATTG 1 cut(s) 136
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 4 cut(s) 405, 420, 497, 534
NdeII GATC 5 cut(s) 292, 369, 553, 614, 712
NlaIII CATG 9 cut(s) 83, 104, 204, 403, 675, 704, 775, 805, 811
NmuCI GTSAC 1 cut(s) 82
NsiI ATGCAT 2 cut(s) 202, 354
NspI RCATGY 3 cut(s) 204, 675, 775
PaeR7I CTCGAG 1 cut(s) 25
PagI TCATGA 1 cut(s) 807
PciI ACATGT 1 cut(s) 771
PfeI GAWTC 2 cut(s) 449, 466
PkrI GCNGC 5 cut(s) 410, 413, 435, 592, 685
PscI ACATGT 1 cut(s) 771
PshBI ATTAAT 1 cut(s) 789
PspFI CCCAGC 1 cut(s) 487
PsuI RGATCY 3 cut(s) 292, 369, 712
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 4 cut(s) 357, 670, 743, 806
SaqAI TTAA 4 cut(s) 339, 743, 789, 863
SatI GCNGC 5 cut(s) 409, 412, 434, 591, 684
Sau3AI GATC 5 cut(s) 292, 369, 553, 614, 712
SduI GDGCHC 4 cut(s) 26, 208, 539, 837
SetI ASST 9 cut(s) 211, 238, 254, 284, 592, 642, 647, 781, 840
SfaNI GCATC 2 cut(s) 187, 520
SfcI CTRYAG 1 cut(s) 585
Sfr274I CTCGAG 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 25
SmiMI CAYNNNNRTG 4 cut(s) 357, 670, 743, 806
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 5 cut(s) 109, 136, 476, 790, 859
SsiI CCGC 2 cut(s) 412, 848
StyI CCWWGG 4 cut(s) 594, 645, 763, 838
TaaI ACNGT 2 cut(s) 333, 832
TaqI TCGA 2 cut(s) 26, 452
TasI AATT 5 cut(s) 109, 136, 476, 790, 859
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 2 cut(s) 449, 466
Tru1I TTAA 4 cut(s) 339, 743, 789, 863
Tru9I TTAA 4 cut(s) 339, 743, 789, 863
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 4 cut(s) 408, 433, 590, 683
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 6 cut(s) 82, 89, 360, 618, 796, 824
VneI GTGCAC 2 cut(s) 204, 833
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 2 cut(s) 109, 859
XceI RCATGY 3 cut(s) 204, 675, 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XhoI CTCGAG 1 cut(s) 25
Zsp2I ATGCAT 2 cut(s) 202, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.