Rroxscaffold_1G00046030

Protein of unknown function (DUF2921)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000420
Physical Location & Seq
Forward (+)
65191670 .. 65194240
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046030.1

Sequence Viewer

Length: 1329 bp
ATGACAATCTCCACGAAGGTTTTCATATCCTTTGTTTTTACCACCATTTCCTTCAATTCAGTGTCATTCTTTGCTTCAGCTGTTCAAATTTCTTATGCTGACCATTGTGCTTCAGTTGTTCCTGAGTCAACTGAAAAAATAAATGCAGGATCTCAGTTTGTACATCTGATTCACACAGGTTACTACTACACTGGTGGCGGCAGTGACATTCTTAATCTATACTTGCCAGATGATCAGGTCAAAAATTCTATTGGCTTCCGATGCTGGGATATTAGAGAAACTCATGTACAAGGCCTGTTCAAGATTGAAGGAACGCTAGAGTTTCAAGTAACCAATGGGTATGAGCTACAAAGCATGCCGCCGATAATAATTTCAGGTTCCGTTTCCTTTAGACTAAATGGATTCTGGTCAGAATCTTCTGGGAAGCTCTGCATGGTCGGATCACCGTCCATTTACTCGAAACAAGGTAACCCACTTGTTGTTCTCAAGCTGTACAATCTCATGAATTCTACTAGTGTTACAAGTTTGATTAGTGGAACCTTTGAGAATGCCATGATACCTGAGAATGATCCCAAGTATTTGGGACCAATCTCTATTTTGATGTTTCCTCGCATGAACTACGAGTACACTTTTGTCTCAACTACTAATAACAATTGCTCTACTGGAAGTAAAGATACCCCAAGCTTTTTACAAGTAGATAGATTTTGTTCACTACTATCATCAATTGTTTTAAATCATGACTTTCCACTCAAATTTTCAAGCCAGTGCATCAATGCAAAGAACTGCACTCCAATTTCTACGCCTCATTTACCTCGGGCTGTGTTGTTTAAGGACATTGCATGTTCGGAGGATAATCGAAGGGTGAGAGTTCTGGTAGAATTTACAGACGGTAGGCTAAACCAATGTCCAACGTTCTTCAATCCTAATACAACTTTAGTTGGTGAAGGCTCATGGGATGCAAAGAAGAATCAGCTATGTGTTGCTGCTTGTCGATTCTTGAATACAACAAATTCTTTGAACAATACTAATGTGGGTGATTGTTCAACAAGATTGAGCTTGAGAATTCCTGCAACACGGACAATTGGAAGTACTAGCAGCATTGTGGGGCATATTTGGAGCACCAAAACTGTGACAGAGTTGGGCTACTTTGAAAAGATCACATTTGCAAGTCGGCAACGGTTGTGGCTTCCGTTCACGCAGCGGCATGAGTTTGGTTGTGGTAGTAATTCGTCGCAGATGGATTGGTGGCCGTCAGATAGGATTCTATGGAATGTGATTAATGCCGTGTCATCAATGCATTCCAAGTTGAGGGAGACACCGACACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
DUF2921

Protein Analysis

442

Amino Acids

49.33

Weight (kDa)

8.18

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2921_N PF25333 32 - 198 5.8e-18 DUF2921 lipocalin-like domain
DUF2921_N PF25333 261 - 387 1.2e-25 DUF2921 lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21700
fragaria_vesca FvH4_1g10360 FvH4_1g10760 FvH4_2g30370 FvH4_3g09240 FvH4_3g20050 FvH4_3g20280 FvH4_3g20290 FvH4_3g20291 FvH4_3g20340 FvH4_3g20350 FvH4_3g20351 FvH4_3g20380 FvH4_3g20390 FvH4_5g13190 FvH4_6g20070 FvH4_6g42890
malus_domestica MD03G1227000.v1.1 MD10G1294900.v1.1 MD11G1246300.v1.1 MD11G1246400.v1.1 MD11G1246500.v1.1 MD11G1246600.v1.1
prunus_persica Prupe.4G047300_v2.0.a1 Prupe.4G181700_v2.0.a1 Prupe.4G181900_v2.0.a1 Prupe.4G182000_v2.0.a1 Prupe.4G182200_v2.0.a1
pyrus_communis pycom03g17470 pycom10g24670 pycom11g21640
rosa_chinensis RchiOBHm_Chr5g0008381 RchiOBHm_Chr5g0008391 RchiOBHm_Chr5g0033881 RchiOBHm_Chr5g0034171 RchiOBHm_Chr5g0034181 RchiOBHm_Chr5g0034191 RchiOBHm_Chr5g0034201 RchiOBHm_Chr5g0034211 RchiOBHm_Chr5g0034221 RchiOBHm_Chr5g0034231 RchiOBHm_Chr5g0034271 RchiOBHm_Chr5g0034281
rosa_laevigata RLG00000031566 RLG00000031567 RLG00000033506 RLG00000033529 RLG00000033530 RLG00000033531
rosa_multiflora Rmu_co8445509.1_g000001 Rmu_co8470615.1_g000001 Rmu_sc0008805.1_g000003 Rmu_sc0008805.1_g000004 Rmu_ssc0000128.1_g000029 Rmu_ssc0000128.1_g000031 Rmu_ssc0000128.1_g000032 Rmu_ssc0000388.1_g000062 Rmu_ssc0000388.1_g000063
rosa_roxburghii Rroxscaffold_1G00046010 Rroxscaffold_1G00046020 Rroxscaffold_1G00046030 Rroxscaffold_1G00046040 Rroxscaffold_1G00046060 Rroxscaffold_1G00046070 Rroxscaffold_1G00046080 Rroxscaffold_1G00046090
rosa_rugosa Rorug04G0435500 Rorug05G0142900 Rorug05G0144600 Rorug05G0144600 Rorug05G0144700 Rorug05G0144800
rosa_samantha Rh5AG233800 Rh5AG235900 Rh5AG236000 Rh5AG236100 Rh5AG236200 Rh5AG236300 Rh5AG236500 Rh5BG061200 Rh5BG061300 Rh5BG234300 Rh5BG236600 Rh5BG236800 Rh5CG071200 Rh5DG060000 Rh5DG060100 Rh5DG241300 Rh5DG243700 Rh5DG244000 Rh5DG244100
rosa_wichuraiana Rw3G018950 Rw5G005680 Rw5G021330 Rw5G021340 Rw5G021350 Rw5G021550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 198, 359, 1201
AclI AACGTT 1 cut(s) 911
AclWI GGATC 3 cut(s) 157, 448, 563
AcoI YGGCCR 1 cut(s) 1247
AcsI RAATTY 7 cut(s) 87, 244, 505, 752, 878, 1009, 1062
AcuI CTGAAG 2 cut(s) 60, 96
AfaI GTAC 5 cut(s) 162, 288, 494, 626, 1090
AfiI CCNNNNNNNGG 2 cut(s) 265, 1308
AhlI ACTAGT 1 cut(s) 512
AluBI AGCT 7 cut(s) 80, 346, 427, 490, 684, 973, 1056
AluI AGCT 7 cut(s) 80, 346, 427, 490, 684, 973, 1056
Alw21I GWGCWC 1 cut(s) 1121
Alw26I GTCTC 2 cut(s) 640, 1307
AlwI GGATC 3 cut(s) 157, 448, 563
Ama87I CYCGRG 1 cut(s) 813
AoxI GGCC 2 cut(s) 292, 1247
ApeKI GCWGC 3 cut(s) 983, 1095, 1198
ApoI RAATTY 7 cut(s) 87, 244, 505, 752, 878, 1009, 1062
AseI ATTAAT 1 cut(s) 1278
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 4 cut(s) 435, 874, 953, 1046
AvaI CYCGRG 1 cut(s) 813
AvaII GGWCC 1 cut(s) 584
BarI GAAGNNNNNNTAC 2 cut(s) 658, 690
Bbv12I GWGCWC 1 cut(s) 1121
BbvI GCAGC 3 cut(s) 970, 1107, 1210
BccI CCATC 1 cut(s) 1231
BceAI ACGGC 2 cut(s) 1234, 1268
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 640, 1307
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 3 cut(s) 317, 513, 1092
BisI GCNGC 6 cut(s) 199, 359, 984, 1096, 1199, 1202
BlsI GCNGC 6 cut(s) 200, 360, 985, 1097, 1200, 1203
BmcAI AGTACT 1 cut(s) 1090
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 1 cut(s) 813
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 3 cut(s) 379, 538, 585
BmsI GCATC 3 cut(s) 251, 777, 946
BpuEI CTTGAG 2 cut(s) 470, 1078
BsaJI CCNNGG 1 cut(s) 812
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 1308
Bse1I ACTGG 3 cut(s) 196, 667, 763
Bse3DI GCAATG 1 cut(s) 834
BseDI CCNNGG 1 cut(s) 812
BseGI GGATG 1 cut(s) 961
BseLI CCNNNNNNNGG 2 cut(s) 265, 1308
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 3 cut(s) 114, 167, 552
BseNI ACTGG 3 cut(s) 196, 667, 763
BseXI GCAGC 3 cut(s) 970, 1107, 1210
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 769
BshFI GGCC 2 cut(s) 294, 1249
BsiHKAI GWGCWC 1 cut(s) 1121
BsiHKCI CYCGRG 1 cut(s) 813
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 2 cut(s) 265, 1308
BsmAI GTCTC 2 cut(s) 640, 1307
BsmFI GGGAC 1 cut(s) 597
BsmI GAATGC 2 cut(s) 553, 1297
BsnI GGCC 2 cut(s) 294, 1249
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 1 cut(s) 1121
Bsp1407I TGTACA 3 cut(s) 160, 286, 492
Bsp143I GATC 5 cut(s) 149, 232, 440, 568, 1155
BspACI CCGC 3 cut(s) 198, 359, 1201
BspANI GGCC 2 cut(s) 294, 1249
BspCNI CTCAG 3 cut(s) 115, 166, 553
BspHI TCATGA 2 cut(s) 501, 736
BspLI GGNNCC 3 cut(s) 379, 538, 585
BspPI GGATC 3 cut(s) 157, 448, 563
BsrDI GCAATG 1 cut(s) 834
BsrGI TGTACA 3 cut(s) 160, 286, 492
BsrI ACTGG 3 cut(s) 196, 667, 763
BssECI CCNNGG 1 cut(s) 812
BssMI GATC 5 cut(s) 149, 232, 440, 568, 1155
Bst4CI ACNGT 4 cut(s) 447, 890, 1129, 1179
BstAUI TGTACA 3 cut(s) 160, 286, 492
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 3 cut(s) 123, 153, 561
BstEII GGTNACC 1 cut(s) 467
BstF5I GGATG 1 cut(s) 961
BstKTI GATC 5 cut(s) 152, 235, 443, 571, 1158
BstMAI GTCTC 2 cut(s) 640, 1307
BstMBI GATC 5 cut(s) 149, 232, 440, 568, 1155
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNSI RCATGY 2 cut(s) 358, 843
BstPI GGTNACC 1 cut(s) 467
BstV1I GCAGC 3 cut(s) 970, 1107, 1210
BstX2I RGATCY 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 2 cut(s) 294, 1249
BtsCI GGATG 1 cut(s) 961
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 4 cut(s) 66, 189, 208, 770
Cac8I GCNNGC 1 cut(s) 356
CciI TCATGA 2 cut(s) 501, 736
Cfr13I GGNCC 1 cut(s) 584
Csp6I GTAC 5 cut(s) 161, 287, 493, 625, 1089
CspCI CAANNNNNGTGG 2 cut(s) 1163, 1198
CviQI GTAC 5 cut(s) 161, 287, 493, 625, 1089
DdeI CTNAG 3 cut(s) 123, 153, 561
DpnI GATC 5 cut(s) 151, 234, 442, 570, 1157
DpnII GATC 5 cut(s) 149, 232, 440, 568, 1155
DraI TTTAAA 1 cut(s) 732
EaeI YGGCCR 1 cut(s) 1247
Eco147I AGGCCT 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 2 cut(s) 60, 96
Eco88I CYCGRG 1 cut(s) 813
Eco91I GGTNACC 1 cut(s) 467
EcoO65I GGTNACC 1 cut(s) 467
EcoRI GAATTC 2 cut(s) 505, 1062
EcoT22I ATGCAT 1 cut(s) 1299
FaqI GGGAC 1 cut(s) 597
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 6 cut(s) 199, 359, 984, 1096, 1199, 1202
FokI GGATG 1 cut(s) 968
Fsp4HI GCNGC 6 cut(s) 199, 359, 984, 1096, 1199, 1202
FspBI CTAG 3 cut(s) 317, 513, 1092
GluI GCNGC 6 cut(s) 199, 359, 984, 1096, 1199, 1202
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 2 cut(s) 294, 1249
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 7 cut(s) 125, 169, 402, 413, 967, 993, 1261
HphI GGTGA 4 cut(s) 435, 874, 953, 1046
Hpy166II GTNNAC 4 cut(s) 129, 627, 710, 1194
Hpy188I TCNGA 6 cut(s) 168, 260, 412, 440, 847, 1255
Hpy188III TCNNGA 5 cut(s) 122, 301, 502, 737, 997
Hpy8I GTNNAC 4 cut(s) 129, 627, 710, 1194
Hpy99I CGWCG 1 cut(s) 1234
HpyAV CCTTC 5 cut(s) 10, 61, 302, 852, 938
HpyCH4III ACNGT 4 cut(s) 447, 890, 1129, 1179
HpyCH4IV ACGT 1 cut(s) 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 3 cut(s) 123, 153, 561
HpySE526I ACGT 1 cut(s) 911
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 5 cut(s) 149, 232, 440, 568, 1155
LmnI GCTCC 1 cut(s) 1116
Lsp1109I GCAGC 3 cut(s) 970, 1107, 1210
LweI GCATC 3 cut(s) 251, 777, 946
MaeI CTAG 3 cut(s) 317, 513, 1092
MaeII ACGT 1 cut(s) 911
MaeIII GTNAC 6 cut(s) 179, 203, 328, 467, 517, 1129
MalI GATC 5 cut(s) 151, 234, 442, 570, 1157
MboI GATC 5 cut(s) 149, 232, 440, 568, 1155
MboII GAAGA 3 cut(s) 408, 907, 976
MfeI CAATTG 3 cut(s) 652, 723, 1080
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 1121
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 418, 932
MnlI CCTC 5 cut(s) 618, 813, 822, 841, 1302
Mph1103I ATGCAT 1 cut(s) 1299
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 4 cut(s) 213, 731, 828, 1278
MspA1I CMGCKG 2 cut(s) 80, 1201
MunI CAATTG 3 cut(s) 652, 723, 1080
Mva1269I GAATGC 2 cut(s) 553, 1297
MwoI GCNNNNNNNGC 1 cut(s) 261
NdeII GATC 5 cut(s) 149, 232, 440, 568, 1155
NlaIV GGNNCC 3 cut(s) 379, 538, 585
NmuCI GTSAC 2 cut(s) 203, 1129
NsiI ATGCAT 1 cut(s) 1299
NspI RCATGY 2 cut(s) 358, 843
PaeI GCATGC 1 cut(s) 358
PagI TCATGA 2 cut(s) 501, 736
PceI AGGCCT 1 cut(s) 294
PctI GAATGC 2 cut(s) 553, 1297
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 6 cut(s) 169, 402, 413, 967, 993, 1261
PkrI GCNGC 6 cut(s) 200, 360, 985, 1097, 1200, 1203
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 1278
Psp1406I AACGTT 1 cut(s) 911
PspEI GGTNACC 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 3 cut(s) 379, 538, 585
PspPI GGNCC 1 cut(s) 584
PsrI GAACNNNNNNTAC 2 cut(s) 608, 640
PsuI RGATCY 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 5 cut(s) 162, 288, 494, 626, 1090
RsaNI GTAC 5 cut(s) 161, 287, 493, 625, 1089
SaqAI TTAA 4 cut(s) 213, 731, 828, 1278
SatI GCNGC 6 cut(s) 199, 359, 984, 1096, 1199, 1202
Sau3AI GATC 5 cut(s) 149, 232, 440, 568, 1155
Sau96I GGNCC 1 cut(s) 584
ScaI AGTACT 1 cut(s) 1090
SchI GAGTC 1 cut(s) 134
SduI GDGCHC 1 cut(s) 1121
SfaNI GCATC 3 cut(s) 251, 777, 946
SinI GGWCC 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 485, 1057
SmoI CTYRAG 2 cut(s) 485, 1057
SpeI ACTAGT 1 cut(s) 512
SphI GCATGC 1 cut(s) 358
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 3 cut(s) 198, 359, 1201
SspMI CTAG 3 cut(s) 317, 513, 1092
StuI AGGCCT 1 cut(s) 294
TaaI ACNGT 4 cut(s) 447, 890, 1129, 1179
TaiI ACGT 1 cut(s) 914
TaqI TCGA 3 cut(s) 458, 856, 991
TatI WGTACW 5 cut(s) 160, 286, 492, 624, 1088
TauI GCSGC 3 cut(s) 201, 361, 1204
TfiI GAWTC 6 cut(s) 169, 402, 413, 967, 993, 1261
Tru1I TTAA 4 cut(s) 213, 731, 828, 1278
Tru9I TTAA 4 cut(s) 213, 731, 828, 1278
TscAI CASTG 4 cut(s) 66, 196, 208, 770
TseFI GTSAC 2 cut(s) 203, 1129
TseI GCWGC 3 cut(s) 983, 1095, 1198
Tsp45I GTSAC 2 cut(s) 203, 1129
TspDTI ATGAA 3 cut(s) 13, 518, 629
TspGWI ACGGA 3 cut(s) 370, 1090, 1179
TspRI CASTG 4 cut(s) 66, 196, 208, 770
VpaK11BI GGWCC 1 cut(s) 584
VspI ATTAAT 1 cut(s) 1278
XapI RAATTY 7 cut(s) 87, 244, 505, 752, 878, 1009, 1062
XceI RCATGY 2 cut(s) 358, 843
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 3 cut(s) 317, 513, 1092
ZrmI AGTACT 1 cut(s) 1090
Zsp2I ATGCAT 1 cut(s) 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.