Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008805.1

Orthogroup ID

OG0006665

Physical Location & Seq

Genomic Coordinates Forward (+)

50 .. 3144

Gene Structure 3095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008805.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgaggcaagagtatggattagtgccgggagtggagcaccatgtttgcctggttgatatgcttgggcgttctgggcttctcgatgaagcatatcagttcatcaaagagcttagcccgggagaggcagctccacctctttggactgccatgcttggggcttgcaagatgcataagaataccgatctcggagtaacagttgctgagcatcttttggaggttgagcctgaaaatccaggccattatgtgatgctttcgaacatatatgcattggcaggtaggatggatagagtggagatggttagaaacatgatgaaaggaagaagcttgagaaagcaagttggctatagtacaatacatgtgaatcagaaaacctatttgtttagcatgggcgacaagtcccacctggggacaaatgaaatttatcagtatttagatgaattgatgcggcggtgcagtgaagcaggatatgcaccatcaccggatttagtgatgcatgaagtggaagaagaagagagggaatatgcccttagatatcacagtgagaagcttgcaattgcatatgggctaatgaaaaccaaggatggtgaggccattaggattgtaaagaacctccgaatgtgtagcaaatttcaaatggaattatcgaagttcaaagctcgagcccgtgtcctgagggtgagaatggcgtctctacccacgatgagattattcaaaagctcgagcatgagccctgagggctcagtattggagcccgagtccctagggtgggagggacgtccctacccacgatgggtaggtagcaaatttcaaatgggattattaaaggtcaaagctcgagcccgagcccggagggtgagaagggcgtccctacccaccatgggtcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

295

Amino Acids

33.69

Weight (kDa)

9.46

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33760
fragaria_vesca	FvH4_4g05520
malus_domestica	MD10G1295100.v1.1
prunus_persica	Prupe.4G047100_v2.0.a1
pyrus_communis	pycom10g24690
rosa_chinensis	RchiOBHm_Chr5g0008361
rosa_laevigata	RLG00000031504 RLG00000031508 RLG00000031509 RLG00000031512 RLG00000031518 RLG00000031519 RLG00000031564
rosa_multiflora	Rmu_sc0008805.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055520 Rroxscaffold_1G00068130 Rroxscaffold_1G00068520
rosa_rugosa	Rorug04G0435500
rosa_samantha	Rh5AG059900 Rh5AG060000 Rh5AG064000 Rh5BG060900 Rh5CG070900 Rh6CG126900
rosa_wichuraiana	Rw5G005700 Rw5G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	778
Acc36I	ACCTGC	1 cut(s)	263
AciI	CCGC	2 cut(s)	445, 448
AcsI	RAATTY	3 cut(s)	417, 626, 803
AcyI	GRCGYC	3 cut(s)	686, 775, 863
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	9 cut(s)	121, 153, 405, 765, 766, 790, 846, 878, 882
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	4 cut(s)	632, 652, 712, 809
AjnI	CCWGG	3 cut(s)	48, 232, 402
AluBI	AGCT	7 cut(s)	109, 128, 324, 547, 656, 717, 833
AluI	AGCT	7 cut(s)	109, 128, 324, 547, 656, 717, 833
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	693
AlwNI	CAGNNNCTG	1 cut(s)	200
Ama87I	CYCGRG	6 cut(s)	115, 657, 718, 752, 834, 840
AoxI	GGCC	2 cut(s)	235, 588
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	3 cut(s)	417, 626, 803
AspA2I	CCTAGG	1 cut(s)	760
AsuC2I	CCSGG	4 cut(s)	27, 116, 117, 847
AsuHPI	GGTGA	4 cut(s)	468, 596, 688, 865
AsuII	TTCGAA	1 cut(s)	254
AvaI	CYCGRG	6 cut(s)	115, 657, 718, 752, 834, 840
AvrII	CCTAGG	1 cut(s)	760
AxyI	CCTNAGG	2 cut(s)	671, 732
BanII	GRGCYC	6 cut(s)	664, 731, 740, 753, 841, 847
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	5 cut(s)	274, 289, 481, 575, 783
BciT130I	CCWGG	3 cut(s)	50, 234, 404
BcnI	CCSGG	4 cut(s)	27, 116, 117, 847
BcoDI	GTCTC	1 cut(s)	693
BfaI	CTAG	1 cut(s)	761
BfmI	CTRYAG	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	263
BglI	GCCNNNNNGGC	1 cut(s)	735
BisI	GCNGC	2 cut(s)	126, 446
BlnI	CCTAGG	1 cut(s)	760
BlpI	GCTNAGC	2 cut(s)	110, 201
BlsI	GCNGC	2 cut(s)	127, 447
Bme1390I	CCNGG	7 cut(s)	27, 50, 116, 117, 234, 404, 847
BmeT110I	CYCGRG	6 cut(s)	115, 657, 718, 752, 834, 840
BmiI	GGNNCC	1 cut(s)	750
BmrFI	CCNGG	7 cut(s)	27, 50, 116, 117, 234, 404, 847
BmsI	GCATC	5 cut(s)	156, 214, 237, 432, 480
Bpu1102I	GCTNAGC	2 cut(s)	110, 201
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	346
BpuMI	CCSGG	4 cut(s)	27, 116, 117, 847
BsaHI	GRCGYC	3 cut(s)	686, 775, 863
BsaJI	CCNNGG	5 cut(s)	115, 403, 576, 760, 876
BsaWI	WCCGGW	1 cut(s)	478
BsaXI	ACNNNNNCTCC	4 cut(s)	180, 210, 740, 770
Bsc4I	CCNNNNNNNGG	9 cut(s)	121, 153, 405, 765, 766, 790, 846, 878, 882
Bse21I	CCTNAGG	2 cut(s)	671, 732
BseBI	CCWGG	3 cut(s)	50, 234, 404
BseDI	CCNNGG	5 cut(s)	115, 403, 576, 760, 876
BseGI	GGATG	2 cut(s)	285, 586
BseLI	CCNNNNNNNGG	9 cut(s)	121, 153, 405, 765, 766, 790, 846, 878, 882
BseMII	CTCAG	4 cut(s)	192, 662, 723, 753
BseXI	GCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	472
BshFI	GGCC	2 cut(s)	237, 590
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	6 cut(s)	115, 657, 718, 752, 834, 840
BsiSI	CCGG	4 cut(s)	26, 116, 479, 847
BslFI	GGGAC	6 cut(s)	382, 421, 742, 762, 786, 850
BslI	CCNNNNNNNGG	9 cut(s)	121, 153, 405, 765, 766, 790, 846, 878, 882
BsmAI	GTCTC	1 cut(s)	693
BsmBI	CGTCTC	1 cut(s)	693
BsmFI	GGGAC	6 cut(s)	382, 421, 742, 762, 786, 850
BsnI	GGCC	2 cut(s)	237, 590
BsoBI	CYCGRG	6 cut(s)	115, 657, 718, 752, 834, 840
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	7 cut(s)	39, 664, 731, 740, 753, 841, 847
Bsp143I	GATC	1 cut(s)	181
Bsp1720I	GCTNAGC	2 cut(s)	110, 201
Bsp19I	CCATGG	1 cut(s)	876
BspACI	CCGC	2 cut(s)	445, 448
BspANI	GGCC	2 cut(s)	237, 590
BspCNI	CTCAG	4 cut(s)	193, 663, 724, 752
BspLI	GGNNCC	1 cut(s)	750
BspMI	ACCTGC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	254
BssECI	CCNNGG	5 cut(s)	115, 403, 576, 760, 876
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	3 cut(s)	686, 775, 863
BssT1I	CCWWGG	3 cut(s)	576, 760, 876
Bst2UI	CCWGG	3 cut(s)	50, 234, 404
Bst4CI	ACNGT	2 cut(s)	196, 539
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	3 cut(s)	686, 775, 863
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	160, 549
BstDEI	CTNAG	6 cut(s)	110, 201, 527, 671, 732, 739
BstDSI	CCRYGG	1 cut(s)	876
BstF5I	GGATG	2 cut(s)	285, 586
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	693
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 467, 735
BstNI	CCWGG	3 cut(s)	50, 234, 404
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	7 cut(s)	25, 48, 114, 115, 232, 402, 845
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	138
Bsu36I	CCTNAGG	2 cut(s)	671, 732
BsuRI	GGCC	2 cut(s)	237, 590
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	2 cut(s)	285, 586
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	460, 544
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	2 cut(s)	160, 549
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr9I	CCCGGG	1 cut(s)	115
CseI	GACGC	2 cut(s)	675, 852
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	8 cut(s)	41, 148, 307, 356, 385, 494, 724, 877
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	6 cut(s)	110, 201, 527, 671, 732, 739
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	3 cut(s)	576, 760, 876
Eco24I	GRGCYC	6 cut(s)	664, 731, 740, 753, 841, 847
Eco32I	GATATC	1 cut(s)	533
Eco81I	CCTNAGG	2 cut(s)	671, 732
Eco88I	CYCGRG	6 cut(s)	115, 657, 718, 752, 834, 840
EcoRII	CCWGG	3 cut(s)	48, 232, 402
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	3 cut(s)	576, 760, 876
EcoT22I	ATGCAT	3 cut(s)	171, 268, 495
EcoT38I	GRGCYC	6 cut(s)	664, 731, 740, 753, 841, 847
ErhI	CCWWGG	3 cut(s)	576, 760, 876
Esp3I	CGTCTC	1 cut(s)	693
FaeI	CATG	8 cut(s)	44, 151, 310, 359, 388, 497, 727, 880
FaqI	GGGAC	6 cut(s)	382, 421, 742, 762, 786, 850
FatI	CATG	8 cut(s)	40, 147, 306, 355, 384, 493, 723, 876
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	126, 446
FokI	GGATG	2 cut(s)	292, 593
FriOI	GRGCYC	6 cut(s)	664, 731, 740, 753, 841, 847
Fsp4HI	GCNGC	2 cut(s)	126, 446
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	2 cut(s)	126, 446
HaeIII	GGCC	2 cut(s)	237, 590
HapII	CCGG	4 cut(s)	26, 116, 479, 847
HgaI	GACGC	2 cut(s)	675, 852
Hin1I	GRCGYC	3 cut(s)	686, 775, 863
Hin1II	CATG	8 cut(s)	44, 151, 310, 359, 388, 497, 727, 880
HindIII	AAGCTT	2 cut(s)	322, 545
HinfI	GANTC	2 cut(s)	361, 755
HpaII	CCGG	4 cut(s)	26, 116, 479, 847
HphI	GGTGA	4 cut(s)	468, 596, 688, 865
Hpy188I	TCNGA	3 cut(s)	188, 366, 614
Hpy188III	TCNNGA	2 cut(s)	80, 670
HpyAV	CCTTC	1 cut(s)	852
HpyCH4III	ACNGT	2 cut(s)	196, 539
HpyCH4IV	ACGT	1 cut(s)	775
HpyCH4V	TGCA	8 cut(s)	162, 169, 266, 453, 470, 493, 551, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 467, 735
HpyF3I	CTNAG	6 cut(s)	110, 201, 527, 671, 732, 739
HpySE526I	ACGT	1 cut(s)	775
Hsp92I	GRCGYC	3 cut(s)	686, 775, 863
Hsp92II	CATG	8 cut(s)	44, 151, 310, 359, 388, 497, 727, 880
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	3 cut(s)	34, 133, 748
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	5 cut(s)	156, 214, 237, 432, 480
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	4 cut(s)	330, 515, 518, 521
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	7 cut(s)	39, 664, 731, 740, 753, 841, 847
MluCI	AATT	6 cut(s)	417, 437, 552, 626, 638, 803
MlyI	GAGTC	1 cut(s)	764
Mph1103I	ATGCAT	3 cut(s)	171, 268, 495
MseI	TTAA	1 cut(s)	821
MspI	CCGG	4 cut(s)	26, 116, 479, 847
MspR9I	CCNGG	7 cut(s)	27, 50, 116, 117, 234, 404, 847
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	3 cut(s)	50, 234, 404
MwoI	GCNNNNNNNGC	3 cut(s)	73, 467, 735
NciI	CCSGG	4 cut(s)	27, 116, 117, 847
NcoI	CCATGG	1 cut(s)	876
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	8 cut(s)	44, 151, 310, 359, 388, 497, 727, 880
NlaIV	GGNNCC	1 cut(s)	750
NsiI	ATGCAT	3 cut(s)	171, 268, 495
NspI	RCATGY	1 cut(s)	359
NspV	TTCGAA	1 cut(s)	254
PaeR7I	CTCGAG	3 cut(s)	657, 718, 834
PciI	ACATGT	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	127, 447
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PscI	ACATGT	1 cut(s)	355
Psp6I	CCWGG	3 cut(s)	48, 232, 402
PspGI	CCWGG	3 cut(s)	48, 232, 402
PspN4I	GGNNCC	1 cut(s)	750
PspXI	VCTCGAGB	3 cut(s)	657, 718, 834
PstNI	CAGNNNCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	821
SatI	GCNGC	2 cut(s)	126, 446
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	7 cut(s)	27, 50, 116, 117, 234, 404, 847
SduI	GDGCHC	7 cut(s)	39, 664, 731, 740, 753, 841, 847
SfaNI	GCATC	5 cut(s)	156, 214, 237, 432, 480
SfcI	CTRYAG	1 cut(s)	343
Sfr274I	CTCGAG	3 cut(s)	657, 718, 834
SfuI	TTCGAA	1 cut(s)	254
SlaI	CTCGAG	3 cut(s)	657, 718, 834
SmaI	CCCGGG	1 cut(s)	117
SmlI	CTYRAG	4 cut(s)	325, 657, 718, 834
SmoI	CTYRAG	4 cut(s)	325, 657, 718, 834
Sse9I	AATT	6 cut(s)	417, 437, 552, 626, 638, 803
SsiI	CCGC	2 cut(s)	445, 448
SspMI	CTAG	1 cut(s)	761
StyD4I	CCNGG	7 cut(s)	25, 48, 114, 115, 232, 402, 845
StyI	CCWWGG	3 cut(s)	576, 760, 876
TaaI	ACNGT	2 cut(s)	196, 539
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	6 cut(s)	81, 254, 644, 658, 719, 835
TasI	AATT	6 cut(s)	417, 437, 552, 626, 638, 803
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	1 cut(s)	821
Tru9I	TTAA	1 cut(s)	821
TscAI	CASTG	2 cut(s)	460, 544
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	7 cut(s)	88, 99, 326, 429, 450, 510, 584
TspMI	CCCGGG	1 cut(s)	115
TspRI	CASTG	2 cut(s)	460, 544
XapI	RAATTY	3 cut(s)	417, 626, 803
XceI	RCATGY	1 cut(s)	359
XhoI	CTCGAG	3 cut(s)	657, 718, 834
XmaI	CCCGGG	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	760
XspI	CTAG	1 cut(s)	761
ZraI	GACGTC	1 cut(s)	776
Zsp2I	ATGCAT	3 cut(s)	171, 268, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.