RLG00000031512

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006665
Physical Location & Seq
Forward (+)
5748246 .. 5753173
4928 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031512

Sequence Viewer

Length: 1254 bp
ATGGCATCTTCTCTGTTCATTCTCCTCCTCATCATCATCACCGCCCCCGTCGCTTCACCCCCAACCACCATCATCACCGCCCCCCCCGCTTCGCCTTCCACACCTCCTCCTCCTCTGGCCACAGCGACGGATCCATCTACCTCATGGCTTCCGCCGCCGCCGCCGCCGCCGCCTCAGTCCAGAGCGACGGATTCTTCCACCTCAGCGGTTCCGCCGCCGCCTCCTCCGGCCACAGCGACGGATCCTTCCACCTCACGGCTTCAAAACCCAGAGACATTCGCACTCACAGAAAACATCAACCTTCTCTCTCTCATGCCCCCAAATCTGCATCCATCACCATCTCTCTGGTTCCTCCGCATCACCACCACCGTCACCGCTTCCGCCACCGCCTCACCGCTTCCGCCGCCGCCGCCGCCTCCTCCTCCAACTACCGCATCACCTCCTCCGCCACACATTCTGGGTTCCACTTTCGGGACGTGTAGCACTAAGGTCTGCTCCCCTCAGTACCCATTCACAGAATCTTGGTCCAAATACCCATTCACACAATCTTGGTCCAAATACGCTATGCCACTAATTCTTGTAGGATGTATGGCTGTACTCTACAAGTGGTTTCCAGGTACATTCCGGTTTCTGGCCTGTTTTGAGCTGTTCAGCATATTCGGCGGTCATGGTGGCGCTGCTGATAACGGAGGAGGGGCGGCAACCGTTTGGGGACTGACAGCCGCCGGAGTAGCCGCTCTGGTTTCGATTCTGGGTGGTGTTGTTGTTGCCTGCCTCCGCACAACTGCTTCATGGCTCGCCACTCTGCTTCTAATTGGGAGAAACTCCGGGAGACACTCCGCGATCGCCGTCAGAGCGGGCGGAGCCGTCGTGGCCAGAGGAGTATTTGCAGTTGGCAGTGCCATCGGACATGGCGGAGCCGTCGTGGGCAGAGCCATCGGAAATGGCGGAGCCGTCGTGGGCAGAGCCATCGGACAGGGCGGAGCCTTCGTGGGCAGAGCCATCGGACAGGGCGGAGCCGTCGTGGGCAGGGGCGGAGCCGTCGTGTGCAGAGCCATCGTCCGACCGGCCAGAGCCGTCTTCGGCAGAGGCGACACAGCGAAGCCACAGCCACCGCAGAGGGTTGGCCTTCAACACTTACTGGTTCCCCATTTCTTGAGGGTTGAGGCTGAGGAGCGGCCTGAGATATCTGCTGCGCCGTTTTTTTGGCTTTGCCAAGCAACTTTGTCTTCAATCAGATCAATTTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

418

Amino Acids

42.81

Weight (kDa)

9.93

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 737, 857, 1177
AccII CGCG 1 cut(s) 842
AclWI GGATC 4 cut(s) 125, 138, 236, 249
AcoI YGGCCR 4 cut(s) 117, 228, 873, 1068
AfaI GTAC 3 cut(s) 506, 597, 619
AfiI CCNNNNNNNGG 3 cut(s) 255, 471, 631
AflIII ACRYGT 1 cut(s) 476
AgsI TTSAA 3 cut(s) 263, 1133, 1233
AjiI CACGTC 1 cut(s) 477
AjnI CCWGG 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AluBI AGCT 1 cut(s) 646
AluI AGCT 1 cut(s) 646
Alw26I GTCTC 2 cut(s) 266, 826
AlwI GGATC 4 cut(s) 125, 138, 236, 249
AoxI GGCC 7 cut(s) 117, 228, 633, 873, 1068, 1126, 1178
ApeKI GCWGC 2 cut(s) 677, 1193
AsiSI GCGATCGC 1 cut(s) 846
AspLEI GCGC 2 cut(s) 677, 1198
AspS9I GGNCC 2 cut(s) 525, 552
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 8 cut(s) 31, 48, 67, 327, 352, 364, 384, 429
AvaII GGWCC 2 cut(s) 525, 552
BalI TGGCCA 2 cut(s) 119, 875
BamHI GGATCC 2 cut(s) 130, 241
BbsI GAAGAC 2 cut(s) 1072, 1221
BbvCI CCTCAGC 2 cut(s) 202, 1170
BbvI GCAGC 2 cut(s) 664, 1180
BccI CCATC 9 cut(s) 77, 142, 340, 346, 911, 944, 977, 1010, 1064
BceAI ACGGC 9 cut(s) 272, 833, 851, 905, 938, 1004, 1025, 1061, 1183
BciT130I CCWGG 1 cut(s) 615
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 2 cut(s) 266, 826
BfoI RGCGCY 1 cut(s) 678
BglI GCCNNNNNGGC 1 cut(s) 872
Bme1390I CCNGG 2 cut(s) 615, 829
Bme18I GGWCC 2 cut(s) 525, 552
BmgBI CACGTC 1 cut(s) 477
BmgT120I GGNCC 2 cut(s) 525, 552
BmrFI CCNGG 2 cut(s) 615, 829
BmsI GCATC 4 cut(s) 14, 337, 366, 443
BpiI GAAGAC 2 cut(s) 1072, 1221
Bpu10I CCTNAGC 2 cut(s) 202, 1170
BpuEI CTTGAG 1 cut(s) 1177
BpuMI CCSGG 1 cut(s) 829
BsaWI WCCGGW 1 cut(s) 624
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 471, 631
Bse118I RCCGGY 1 cut(s) 1066
Bse1I ACTGG 1 cut(s) 1146
BseBI CCWGG 1 cut(s) 615
BseGI GGATG 2 cut(s) 328, 590
BseLI CCNNNNNNNGG 3 cut(s) 255, 471, 631
BseMII CTCAG 5 cut(s) 188, 216, 515, 1161, 1173
BseNI ACTGG 1 cut(s) 1146
BseXI GCAGC 2 cut(s) 664, 1180
BsgI GTGCAG 1 cut(s) 1069
Bsh1236I CGCG 1 cut(s) 842
Bsh1285I CGRYCG 2 cut(s) 846, 1067
BshFI GGCC 7 cut(s) 119, 230, 635, 875, 1070, 1128, 1180
BsiEI CGRYCG 2 cut(s) 846, 1067
BsiSI CCGG 5 cut(s) 227, 625, 726, 828, 1067
BslFI GGGAC 2 cut(s) 487, 726
BslI CCNNNNNNNGG 3 cut(s) 255, 471, 631
BsmAI GTCTC 2 cut(s) 266, 826
BsmFI GGGAC 2 cut(s) 487, 726
BsnI GGCC 7 cut(s) 119, 230, 635, 875, 1070, 1128, 1180
Bsp143I GATC 4 cut(s) 130, 241, 843, 1238
BspANI GGCC 7 cut(s) 119, 230, 635, 875, 1070, 1128, 1180
BspCNI CTCAG 5 cut(s) 187, 215, 514, 1162, 1174
BspFNI CGCG 1 cut(s) 842
BspPI GGATC 4 cut(s) 125, 138, 236, 249
BsrBI CCGCTC 3 cut(s) 737, 857, 1177
BsrFI RCCGGY 1 cut(s) 1066
BsrI ACTGG 1 cut(s) 1146
BssAI RCCGGY 1 cut(s) 1066
BssMI GATC 4 cut(s) 130, 241, 843, 1238
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 2 cut(s) 370, 706
BstC8I GCNNGC 3 cut(s) 772, 798, 859
BstDEI CTNAG 6 cut(s) 174, 202, 486, 501, 1170, 1182
BstF5I GGATG 2 cut(s) 328, 590
BstFNI CGCG 1 cut(s) 842
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 2 cut(s) 677, 1198
BstKTI GATC 4 cut(s) 133, 244, 846, 1241
BstMAI GTCTC 2 cut(s) 266, 826
BstMBI GATC 4 cut(s) 130, 241, 843, 1238
BstMCI CGRYCG 2 cut(s) 846, 1067
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 2 cut(s) 613, 827
BstUI CGCG 1 cut(s) 842
BstV1I GCAGC 2 cut(s) 664, 1180
BstV2I GAAGAC 2 cut(s) 1072, 1221
BstX2I RGATCY 2 cut(s) 130, 241
BstXI CCANNNNNNTGG 1 cut(s) 345
BstYI RGATCY 2 cut(s) 130, 241
BsuRI GGCC 7 cut(s) 119, 230, 635, 875, 1070, 1128, 1180
BtrI CACGTC 1 cut(s) 477
BtsCI GGATG 2 cut(s) 328, 590
BtsI GCAGTG 1 cut(s) 904
BtsIMutI CAGTG 1 cut(s) 904
Cac8I GCNNGC 3 cut(s) 772, 798, 859
CfoI GCGC 2 cut(s) 677, 1198
Cfr10I RCCGGY 1 cut(s) 1066
Cfr13I GGNCC 2 cut(s) 525, 552
Csp6I GTAC 3 cut(s) 505, 596, 618
CviAII CATG 5 cut(s) 144, 313, 668, 792, 911
CviQI GTAC 3 cut(s) 505, 596, 618
DdeI CTNAG 6 cut(s) 174, 202, 486, 501, 1170, 1182
DpnI GATC 4 cut(s) 132, 243, 845, 1240
DpnII GATC 4 cut(s) 130, 241, 843, 1238
EaeI YGGCCR 4 cut(s) 117, 228, 873, 1068
Eco32I GATATC 1 cut(s) 1188
Eco47I GGWCC 2 cut(s) 525, 552
EcoRII CCWGG 1 cut(s) 613
EcoRV GATATC 1 cut(s) 1188
FaeI CATG 5 cut(s) 147, 316, 671, 795, 914
FaiI YATR 9 cut(s) 145, 314, 566, 590, 656, 669, 793, 912, 1248
FaqI GGGAC 2 cut(s) 487, 726
FatI CATG 5 cut(s) 143, 312, 667, 791, 910
FauI CCCGC 2 cut(s) 94, 850
FokI GGATG 2 cut(s) 315, 597
GlaI GCGC 2 cut(s) 676, 1197
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 7 cut(s) 119, 230, 635, 875, 1070, 1128, 1180
HapII CCGG 5 cut(s) 227, 625, 726, 828, 1067
HhaI GCGC 2 cut(s) 677, 1198
Hin1II CATG 5 cut(s) 147, 316, 671, 795, 914
Hin6I GCGC 2 cut(s) 675, 1196
HinP1I GCGC 2 cut(s) 675, 1196
HinfI GANTC 3 cut(s) 191, 518, 748
HpaII CCGG 5 cut(s) 227, 625, 726, 828, 1067
HphI GGTGA 8 cut(s) 31, 48, 67, 327, 352, 364, 384, 429
Hpy188I TCNGA 7 cut(s) 854, 908, 941, 974, 1007, 1064, 1238
Hpy188III TCNNGA 3 cut(s) 180, 472, 1156
Hpy99I CGWCG 9 cut(s) 53, 130, 190, 241, 872, 926, 959, 1025, 1046
HpyAV CCTTC 5 cut(s) 105, 255, 311, 997, 1139
HpyCH4III ACNGT 2 cut(s) 370, 706
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 3 cut(s) 328, 890, 1050
HpyF3I CTNAG 6 cut(s) 174, 202, 486, 501, 1170, 1182
HpySE526I ACGT 1 cut(s) 476
Hsp92II CATG 5 cut(s) 147, 316, 671, 795, 914
HspAI GCGC 2 cut(s) 675, 1196
Kzo9I GATC 4 cut(s) 130, 241, 843, 1238
LmnI GCTCC 8 cut(s) 500, 863, 917, 950, 983, 1016, 1037, 1174
Lsp1109I GCAGC 2 cut(s) 664, 1180
LweI GCATC 4 cut(s) 14, 337, 366, 443
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 1 cut(s) 370
MalI GATC 4 cut(s) 132, 243, 845, 1240
MbiI CCGCTC 3 cut(s) 737, 857, 1177
MboI GATC 4 cut(s) 130, 241, 843, 1238
MboII GAAGA 3 cut(s) 186, 1072, 1221
MflI RGATCY 2 cut(s) 130, 241
MlsI TGGCCA 2 cut(s) 119, 875
MluCI AATT 3 cut(s) 573, 813, 1242
MluNI TGGCCA 2 cut(s) 119, 875
MmeI TCCRAC 2 cut(s) 449, 1087
Mox20I TGGCCA 2 cut(s) 119, 875
MscI TGGCCA 2 cut(s) 119, 875
Msp20I TGGCCA 2 cut(s) 119, 875
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 5 cut(s) 227, 625, 726, 828, 1067
MspR9I CCNGG 2 cut(s) 615, 829
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 1 cut(s) 842
NciI CCSGG 1 cut(s) 829
NdeII GATC 4 cut(s) 130, 241, 843, 1238
NlaIII CATG 5 cut(s) 147, 316, 671, 795, 914
NmuCI GTSAC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 1089
PfeI GAWTC 3 cut(s) 191, 518, 748
PfoI TCCNGGA 1 cut(s) 827
Ple19I CGATCG 1 cut(s) 846
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspPI GGNCC 2 cut(s) 525, 552
PsuI RGATCY 2 cut(s) 130, 241
PvuI CGATCG 1 cut(s) 846
RgaI GCGATCGC 1 cut(s) 846
RsaI GTAC 3 cut(s) 506, 597, 619
RsaNI GTAC 3 cut(s) 505, 596, 618
Sau3AI GATC 4 cut(s) 130, 241, 843, 1238
Sau96I GGNCC 2 cut(s) 525, 552
ScrFI CCNGG 2 cut(s) 615, 829
SfaAI GCGATCGC 1 cut(s) 846
SfaNI GCATC 4 cut(s) 14, 337, 366, 443
SgfI GCGATCGC 1 cut(s) 846
SinI GGWCC 2 cut(s) 525, 552
SmlI CTYRAG 1 cut(s) 1156
SmoI CTYRAG 1 cut(s) 1156
Sse9I AATT 3 cut(s) 573, 813, 1242
StyD4I CCNGG 2 cut(s) 613, 827
TaaI ACNGT 2 cut(s) 370, 706
TaiI ACGT 1 cut(s) 479
TaqI TCGA 1 cut(s) 746
TasI AATT 3 cut(s) 573, 813, 1242
TatI WGTACW 1 cut(s) 595
TfiI GAWTC 3 cut(s) 191, 518, 748
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 677, 1193
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 7, 780
TspGWI ACGGA 4 cut(s) 143, 203, 254, 702
TspRI CASTG 1 cut(s) 904
VpaK11BI GGWCC 2 cut(s) 525, 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.