Rroxscaffold_1G00055520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006665
Physical Location & Seq
Reverse (-)
76981399 .. 76983959
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055520.1

Sequence Viewer

Length: 876 bp
ATGGCATCTTCTCTCTTCATTCTCCTCCTCATCATCATCACCGCCCCCGCCGCTTCGCCTTCCACACCTCCTCCTCCTCTGGCCACAGCGACGGATCCATCTACCTCAAGGCTTCCGCCGCCGCCGCCTCCGACCAGAGCGACGGATTCTTCCACCTCAGCGGTTCCGCCGCCGCCTCCTCCAGCCACAGCGACGGATCCTTCCACCTCACGGCTTCAAAACCCAGAGACATTAGCACTCACAGAAAACATCAGCCTTCTCTCTCCCATGCCCCCAAATCTGCATCCATCACCATCTCTCTGGTTCCTCCACATCACCACCACCGTCACCGCTTCCGCCGCCGCCTCACCCCCAACCACCTCACCGCTTCCTCCGCCGCCGCCTCCGCCTCCAACTACCACAGCACCTCCTCCGCCACACATTCTGGGTTCCAATTTCGGGAAGTGTAGCACTAAGGTCTGCTCCCCTCAGTACCCATTCACAGAATCTTGGTCCAAATACGCTATGCCACTAATTCTTGTAGGATGTATGGCTGTACTCTACAAATGGTCTCCCGGTACATTCCTGTTTCTGGCCTGTTTTGAGCTGTTCAGCATATTCGGCGGGGGCGCTCCTGATACCGGAGGAGGGGCGGCAACCTTTTGGGGACTGACAGCCGCCGGAGCCTCTCTGGTTTCGATTCTGGGTGGTGTTGTTGTTGCCTGCCTCCGCACAACTGCTTCATGGGTCATTAGTGGTTCGGTTGCCTTGCCCGTCAGACCGGGCGGAGCCGTCGTGTGCAGAGCCATCGTCCGACCGGCCAGAGCCGTCTTCGGCAGAGGCGACACAGCGAAGCCACAGCCACCGCAGAGGGTTGGCCTTCAACACTTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

29.86

Weight (kDa)

9.24

Isoelectric Point (pI)

75.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 89, 102, 191, 204
AcoI YGGCCR 2 cut(s) 81, 798
AfaI GTAC 3 cut(s) 473, 537, 559
AfiI CCNNNNNNNGG 5 cut(s) 210, 438, 571, 620, 627
AgsI TTSAA 2 cut(s) 218, 863
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
Alw26I GTCTC 2 cut(s) 221, 555
AlwI GGATC 4 cut(s) 89, 102, 191, 204
AoxI GGCC 4 cut(s) 81, 573, 798, 856
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 492
AsuC2I CCSGG 2 cut(s) 555, 762
AsuHPI GGTGA 6 cut(s) 31, 282, 307, 319, 339, 354
AvaII GGWCC 1 cut(s) 492
BalI TGGCCA 1 cut(s) 83
BamHI GGATCC 2 cut(s) 94, 196
BbsI GAAGAC 1 cut(s) 802
BbvCI CCTCAGC 1 cut(s) 157
BccI CCATC 4 cut(s) 106, 295, 301, 794
BceAI ACGGC 3 cut(s) 227, 755, 791
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BcnI CCSGG 2 cut(s) 555, 762
BcoDI GTCTC 2 cut(s) 221, 555
BfmI CTRYAG 1 cut(s) 872
BfoI RGCGCY 1 cut(s) 612
Bme1390I CCNGG 2 cut(s) 555, 762
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 7 cut(s) 96, 165, 198, 305, 430, 664, 769
BmrFI CCNGG 2 cut(s) 555, 762
BmsI GCATC 2 cut(s) 14, 292
BpiI GAAGAC 1 cut(s) 802
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 91
BpuMI CCSGG 2 cut(s) 555, 762
BsaI GGTCTC 1 cut(s) 555
BsaWI WCCGGW 1 cut(s) 620
BsaXI ACNNNNNCTCC 6 cut(s) 55, 85, 391, 421, 759, 789
Bsc4I CCNNNNNNNGG 5 cut(s) 210, 438, 571, 620, 627
Bse118I RCCGGY 1 cut(s) 796
BseGI GGATG 2 cut(s) 283, 530
BseLI CCNNNNNNNGG 5 cut(s) 210, 438, 571, 620, 627
BseMII CTCAG 2 cut(s) 171, 482
BseRI GAGGAG 8 cut(s) 14, 17, 60, 63, 66, 168, 399, 639
BsgI GTGCAG 1 cut(s) 799
Bsh1285I CGRYCG 1 cut(s) 797
BshFI GGCC 4 cut(s) 83, 575, 800, 858
BsiEI CGRYCG 1 cut(s) 797
BsiSI CCGG 5 cut(s) 555, 621, 660, 761, 797
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 5 cut(s) 210, 438, 571, 620, 627
BsmAI GTCTC 2 cut(s) 221, 555
BsmFI GGGAC 1 cut(s) 660
BsnI GGCC 4 cut(s) 83, 575, 800, 858
Bso31I GGTCTC 1 cut(s) 555
Bsp143I GATC 2 cut(s) 94, 196
BspANI GGCC 4 cut(s) 83, 575, 800, 858
BspCNI CTCAG 2 cut(s) 170, 481
BspLI GGNNCC 7 cut(s) 96, 165, 198, 305, 430, 664, 769
BspPI GGATC 4 cut(s) 89, 102, 191, 204
BspTNI GGTCTC 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 796
BssAI RCCGGY 1 cut(s) 796
BssMI GATC 2 cut(s) 94, 196
Bst4CI ACNGT 2 cut(s) 325, 873
Bst6I CTCTTC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 3 cut(s) 157, 453, 468
BstF5I GGATG 2 cut(s) 283, 530
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 2 cut(s) 97, 199
BstMAI GTCTC 2 cut(s) 221, 555
BstMBI GATC 2 cut(s) 94, 196
BstMCI CGRYCG 1 cut(s) 797
BstMWI GCNNNNNNNGC 8 cut(s) 50, 118, 124, 338, 373, 385, 600, 662
BstSCI CCNGG 2 cut(s) 553, 760
BstSFI CTRYAG 1 cut(s) 872
BstV2I GAAGAC 1 cut(s) 802
BstX2I RGATCY 2 cut(s) 94, 196
BstXI CCANNNNNNTGG 1 cut(s) 300
BstYI RGATCY 2 cut(s) 94, 196
BsuRI GGCC 4 cut(s) 83, 575, 800, 858
BtsCI GGATG 2 cut(s) 283, 530
Cac8I GCNNGC 1 cut(s) 703
CfoI GCGC 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 796
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 3 cut(s) 472, 536, 558
CviAII CATG 2 cut(s) 268, 723
CviQI GTAC 3 cut(s) 472, 536, 558
DdeI CTNAG 3 cut(s) 157, 453, 468
DpnI GATC 2 cut(s) 96, 198
DpnII GATC 2 cut(s) 94, 196
EaeI YGGCCR 2 cut(s) 81, 798
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 7 cut(s) 105, 156, 325, 363, 375, 402, 780
Eco31I GGTCTC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 492
FaeI CATG 2 cut(s) 271, 726
FaiI YATR 5 cut(s) 269, 506, 530, 596, 724
FaqI GGGAC 1 cut(s) 660
FatI CATG 2 cut(s) 267, 722
FauI CCCGC 2 cut(s) 55, 596
FokI GGATG 2 cut(s) 270, 537
GlaI GCGC 1 cut(s) 610
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 4 cut(s) 83, 575, 800, 858
HapII CCGG 5 cut(s) 555, 621, 660, 761, 797
HhaI GCGC 1 cut(s) 611
Hin1II CATG 2 cut(s) 271, 726
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HinfI GANTC 3 cut(s) 146, 485, 679
HpaII CCGG 5 cut(s) 555, 621, 660, 761, 797
HphI GGTGA 6 cut(s) 31, 282, 307, 319, 339, 354
Hpy188I TCNGA 3 cut(s) 132, 758, 794
Hpy188III TCNNGA 2 cut(s) 439, 614
Hpy99I CGWCG 4 cut(s) 94, 145, 196, 776
HpyAV CCTTC 4 cut(s) 69, 210, 266, 869
HpyCH4III ACNGT 2 cut(s) 325, 873
HpyCH4V TGCA 2 cut(s) 283, 780
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 118, 124, 338, 373, 385, 600, 662
HpyF3I CTNAG 3 cut(s) 157, 453, 468
Hsp92II CATG 2 cut(s) 271, 726
HspAI GCGC 1 cut(s) 609
Kzo9I GATC 2 cut(s) 94, 196
LmnI GCTCC 4 cut(s) 467, 616, 662, 767
LweI GCATC 2 cut(s) 14, 292
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 96, 198
MboI GATC 2 cut(s) 94, 196
MboII GAAGA 3 cut(s) 7, 141, 802
MflI RGATCY 2 cut(s) 94, 196
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 433, 513
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 3 cut(s) 155, 416, 817
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 5 cut(s) 555, 621, 660, 761, 797
MspR9I CCNGG 2 cut(s) 555, 762
MwoI GCNNNNNNNGC 8 cut(s) 50, 118, 124, 338, 373, 385, 600, 662
NciI CCSGG 2 cut(s) 555, 762
NdeII GATC 2 cut(s) 94, 196
NlaIII CATG 2 cut(s) 271, 726
NlaIV GGNNCC 7 cut(s) 96, 165, 198, 305, 430, 664, 769
NmuCI GTSAC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 819
PfeI GAWTC 3 cut(s) 146, 485, 679
PspN4I GGNNCC 7 cut(s) 96, 165, 198, 305, 430, 664, 769
PspPI GGNCC 1 cut(s) 492
PsuI RGATCY 2 cut(s) 94, 196
RsaI GTAC 3 cut(s) 473, 537, 559
RsaNI GTAC 3 cut(s) 472, 536, 558
Sau3AI GATC 2 cut(s) 94, 196
Sau96I GGNCC 1 cut(s) 492
ScrFI CCNGG 2 cut(s) 555, 762
SetI ASST 9 cut(s) 70, 107, 158, 209, 362, 409, 459, 588, 641
SfaNI GCATC 2 cut(s) 14, 292
SfcI CTRYAG 1 cut(s) 872
SinI GGWCC 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 433, 513
StyD4I CCNGG 2 cut(s) 553, 760
TaaI ACNGT 2 cut(s) 325, 873
TaqI TCGA 1 cut(s) 677
TasI AATT 2 cut(s) 433, 513
TatI WGTACW 1 cut(s) 535
TfiI GAWTC 3 cut(s) 146, 485, 679
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 7, 711
TspGWI ACGGA 3 cut(s) 107, 158, 209
VpaK11BI GGWCC 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.