Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006665

Physical Location & Seq

Genomic Coordinates Forward (+)

5117770 .. 5124302

Gene Structure 6533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCGGAGCCATCGTGGGCAGGGCCATTGGACAGGGTGGAGCCTTCGTGGGCAGAGCCATCAGATAGGGCGGAGCCGTCGAGGGCAGTGGCATCGTCCGACCGGCCAGAGCCGTCTTCGGCAGAGGCGACACAGCGAAGGCACAGCCACCGCAGAGGGTTGGCCTTCAACACTTACTTCTCTGTGAATCTCTATTCACAAGTCGTAGGAAGTCTTCAACAGAAAAGACTGCCTTATTCAGTCTCTTGTGAAATGACCCATCTTTTCCAATTTTTTCCAGTCTCCAAACCTCATCAGTTAGCACAGGTCCCTTTCAGTACTCCCACTGGCGTTGAGGCACCTAATTTCATTGACCATATAAAACAGCAGAGAAAGGAGCCTGAAAGGCCTTTACACCATGTACTTGAAGAGAACGAAGAAAGGATTGCTTCAGGGACATTGTTTGGAACGACTCACGCATGTGTTGTTGGTAGGAGTTTAGAAGGGTGGATCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

165

Amino Acids

18.62

Weight (kDa)

6.44

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33760
fragaria_vesca	FvH4_4g05520
malus_domestica	MD10G1295100.v1.1
prunus_persica	Prupe.4G047100_v2.0.a1
pyrus_communis	pycom10g24690
rosa_chinensis	RchiOBHm_Chr5g0008361
rosa_laevigata	RLG00000031504 RLG00000031508 RLG00000031509 RLG00000031512 RLG00000031518 RLG00000031519 RLG00000031564
rosa_multiflora	Rmu_sc0008805.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055520 Rroxscaffold_1G00068130 Rroxscaffold_1G00068520
rosa_rugosa	Rorug04G0435500
rosa_samantha	Rh5AG059900 Rh5AG060000 Rh5AG064000 Rh5BG060900 Rh5CG070900 Rh6CG126900
rosa_wichuraiana	Rw5G005700 Rw5G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	3 cut(s)	5, 71, 151
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	2 cut(s)	319, 402
AgsI	TTSAA	3 cut(s)	169, 218, 407
AleI	CACNNNNGTG	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	247, 286
AlwI	GGATC	1 cut(s)	497
AoxI	GGCC	4 cut(s)	23, 104, 162, 386
AspS9I	GGNCC	2 cut(s)	23, 307
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	337
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
BbsI	GAAGAC	2 cut(s)	108, 206
BccI	CCATC	3 cut(s)	19, 67, 267
BceAI	ACGGC	2 cut(s)	61, 97
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BcoDI	GTCTC	2 cut(s)	247, 286
BglI	GCCNNNNNGGC	1 cut(s)	385
BmcAI	AGTACT	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	23, 307
BmiI	GGNNCC	6 cut(s)	9, 42, 75, 309, 339, 378
BmsI	GCATC	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	108, 206
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 32, 62
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	2 cut(s)	278, 331
BseNI	ACTGG	2 cut(s)	278, 331
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	4 cut(s)	25, 106, 164, 388
BshNI	GGYRCC	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	2 cut(s)	293, 448
BsmAI	GTCTC	2 cut(s)	247, 286
BsmFI	GGGAC	2 cut(s)	293, 448
BsnI	GGCC	4 cut(s)	25, 106, 164, 388
Bsp143I	GATC	1 cut(s)	489
BspACI	CCGC	3 cut(s)	5, 71, 151
BspANI	GGCC	4 cut(s)	25, 106, 164, 388
BspLI	GGNNCC	6 cut(s)	9, 42, 75, 309, 339, 378
BspPI	GGATC	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	278, 331
BssAI	RCCGGY	1 cut(s)	102
BssMI	GATC	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	402
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	2 cut(s)	247, 286
BstMBI	GATC	1 cut(s)	489
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNSI	RCATGY	1 cut(s)	462
BstV2I	GAAGAC	2 cut(s)	108, 206
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BsuRI	GGCC	4 cut(s)	25, 106, 164, 388
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	93, 324
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	23, 307
Csp6I	GTAC	2 cut(s)	318, 401
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	2 cut(s)	398, 459
CviQI	GTAC	2 cut(s)	318, 401
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	2 cut(s)	20, 86
Eco147I	AGGCCT	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	307
FaeI	CATG	2 cut(s)	401, 462
FaiI	YATR	4 cut(s)	357, 359, 399, 460
FalI	AAGNNNNNCTT	4 cut(s)	217, 249, 412, 444
FaqI	GGGAC	2 cut(s)	293, 448
FatI	CATG	2 cut(s)	397, 458
HaeIII	GGCC	4 cut(s)	25, 106, 164, 388
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	401, 462
HinfI	GANTC	2 cut(s)	187, 451
HpaII	CCGG	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	64, 100
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	4 cut(s)	54, 132, 175, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
Hsp92II	CATG	2 cut(s)	401, 462
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	4 cut(s)	7, 40, 73, 376
LpnPI	CCDG	9 cut(s)	6, 19, 116, 120, 290, 291, 312, 393, 417
LweI	GCATC	1 cut(s)	101
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	4 cut(s)	108, 206, 419, 428
MflI	RGATCY	1 cut(s)	489
MluCI	AATT	2 cut(s)	269, 343
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	75, 118, 149, 300, 328
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	2 cut(s)	401, 462
NlaIV	GGNNCC	6 cut(s)	9, 42, 75, 309, 339, 378
NspI	RCATGY	1 cut(s)	462
OliI	CACNNNNGTG	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PpuMI	RGGWCCY	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	307
PspN4I	GGNNCC	6 cut(s)	9, 42, 75, 309, 339, 378
PspPI	GGNCC	2 cut(s)	23, 307
PspPPI	RGGWCCY	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	489
RsaI	GTAC	2 cut(s)	319, 402
RsaNI	GTAC	2 cut(s)	318, 401
RseI	CAYNNNNRTG	1 cut(s)	459
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	2 cut(s)	23, 307
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	1 cut(s)	445
SetI	ASST	3 cut(s)	292, 309, 343
SfaNI	GCATC	1 cut(s)	101
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	2 cut(s)	269, 343
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	3 cut(s)	5, 71, 151
StuI	AGGCCT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	269, 343
TatI	WGTACW	2 cut(s)	317, 400
TfiI	GAWTC	1 cut(s)	187
TscAI	CASTG	2 cut(s)	93, 331
TspDTI	ATGAA	1 cut(s)	337
TspRI	CASTG	2 cut(s)	93, 331
VpaK11BI	GGWCC	1 cut(s)	307
XceI	RCATGY	1 cut(s)	462
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.