Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006665

Physical Location & Seq

Genomic Coordinates Reverse (-)

6249894 .. 6252384

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGGCGCTGCTGATACCGGAGGAGGGGCGGCAACCGTTTGGGGACGCCGGAGTAGCCGCTCTGGTTTTGATTTTGGGTGGTGTTGTTGTTGCCTACCTCCGCACAACTGCTTCATGGGTCCTTAGTGGTTCGGTTACCTTGCTCGCCACTCTGCTTCTAATTGGGAGACACGCCGCGATCGCCGTCAGAGCGGGCGGAGCAGTCGTGGCCAGAGGAGTCTTTGGAGTTGGCAGTGCCATCGAACATGGCAGAGCCGTCGTGGGCAGGGCCATCGAACATGGCAGAGCCGTCGTGGGCAGGCCATTGGACAGGGTGGAGCCTTCGTGGGCAGAGCCATCAGATAGGGCGGAGCCGTCGAGGGCAGTGGCATCGTCCGACCGGCCAGAGCCGTCTTCGGCAGAGGCGACACAGCGAAGGCACAGCCACTGCAGAGGGTTGGCCTTCAACACTTACTGTAGGCTTCGAGGATTGATGGTTCCCCATTTCTTGAGGGTTGAGGCTGAGGAGCGGCCTGAGATATCTGCTGCGCCGTTTTTTTGGCTTTGCCAAGCTCGATTCTTGGCTCATCCAAACAGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

20.69

Weight (kDa)

9.58

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33760
fragaria_vesca	FvH4_4g05520
malus_domestica	MD10G1295100.v1.1
prunus_persica	Prupe.4G047100_v2.0.a1
pyrus_communis	pycom10g24690
rosa_chinensis	RchiOBHm_Chr5g0008361
rosa_laevigata	RLG00000031504 RLG00000031508 RLG00000031509 RLG00000031512 RLG00000031518 RLG00000031519 RLG00000031564
rosa_multiflora	Rmu_sc0008805.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055520 Rroxscaffold_1G00068130 Rroxscaffold_1G00068520
rosa_rugosa	Rorug04G0435500
rosa_samantha	Rh5AG059900 Rh5AG060000 Rh5AG064000 Rh5BG060900 Rh5CG070900 Rh6CG126900
rosa_wichuraiana	Rw5G005700 Rw5G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	62, 194, 511
AccII	CGCG	1 cut(s)	179
AciI	CCGC	8 cut(s)	31, 60, 103, 177, 194, 198, 350, 511
AcoI	YGGCCR	2 cut(s)	210, 383
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	448
AloI	GAACNNNNNNTCC	2 cut(s)	462, 494
AluBI	AGCT	1 cut(s)	554
AluI	AGCT	1 cut(s)	554
Alw26I	GTCTC	1 cut(s)	163
AlwNI	CAGNNNCTG	1 cut(s)	429
AoxI	GGCC	6 cut(s)	210, 270, 302, 383, 441, 512
ApeKI	GCWGC	2 cut(s)	10, 527
AsiSI	GCGATCGC	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	10, 532
AspS9I	GGNCC	2 cut(s)	121, 270
AvaII	GGWCC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	4 cut(s)	248, 281, 346, 469
BceAI	ACGGC	6 cut(s)	170, 242, 275, 340, 376, 517
BcoDI	GTCTC	1 cut(s)	163
BfmI	CTRYAG	2 cut(s)	430, 457
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	6 cut(s)	11, 32, 60, 177, 512, 528
BlsI	GCNGC	6 cut(s)	12, 33, 61, 178, 513, 529
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 270
BmiI	GGNNCC	4 cut(s)	122, 321, 354, 480
BmsI	GCATC	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	511
BsaHI	GRCGYC	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	381
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	495, 507
BseRI	GAGGAG	3 cut(s)	38, 231, 521
BseXI	GCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	2 cut(s)	183, 382
BshFI	GGCC	6 cut(s)	212, 272, 304, 385, 443, 514
BsiEI	CGRYCG	2 cut(s)	183, 382
BsiSI	CCGG	3 cut(s)	20, 51, 382
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	6 cut(s)	212, 272, 304, 385, 443, 514
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	8 cut(s)	31, 60, 103, 177, 194, 198, 350, 511
BspANI	GGCC	6 cut(s)	212, 272, 304, 385, 443, 514
BspCNI	CTCAG	2 cut(s)	496, 508
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	4 cut(s)	122, 321, 354, 480
BspMAI	CTGCAG	1 cut(s)	434
BsrBI	CCGCTC	3 cut(s)	62, 194, 511
BsrFI	RCCGGY	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	381
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	39, 458, 578
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	147, 196, 302
BstDEI	CTNAG	3 cut(s)	125, 504, 516
BstEII	GGTNACC	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 532
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	180
BstMCI	CGRYCG	2 cut(s)	183, 382
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 182, 191, 200, 209
BstPI	GGTNACC	1 cut(s)	136
BstSFI	CTRYAG	2 cut(s)	430, 457
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	387
BsuRI	GGCC	6 cut(s)	212, 272, 304, 385, 443, 514
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	3 cut(s)	241, 372, 427
BtsIMutI	CAGTG	3 cut(s)	241, 372, 427
Cac8I	GCNNGC	3 cut(s)	147, 196, 302
CaiI	CAGNNNCTG	1 cut(s)	429
CfoI	GCGC	2 cut(s)	10, 532
Cfr10I	RCCGGY	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	121, 270
CseI	GACGC	1 cut(s)	56
CviAII	CATG	3 cut(s)	117, 248, 281
DdeI	CTNAG	3 cut(s)	125, 504, 516
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	210, 383
EciI	GGCGGA	2 cut(s)	213, 365
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	522
FaeI	CATG	3 cut(s)	120, 251, 284
FaiI	YATR	3 cut(s)	118, 249, 282
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	116, 247, 280
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	6 cut(s)	11, 32, 60, 177, 512, 528
FokI	GGATG	1 cut(s)	555
Fsp4HI	GCNGC	6 cut(s)	11, 32, 60, 177, 512, 528
GlaI	GCGC	2 cut(s)	9, 531
GluI	GCNGC	6 cut(s)	11, 32, 60, 177, 512, 528
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	6 cut(s)	212, 272, 304, 385, 443, 514
HapII	CCGG	3 cut(s)	20, 51, 382
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	2 cut(s)	10, 532
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	120, 251, 284
Hin6I	GCGC	2 cut(s)	8, 530
HinP1I	GCGC	2 cut(s)	8, 530
HinfI	GANTC	2 cut(s)	219, 558
HpaII	CCGG	3 cut(s)	20, 51, 382
Hpy188I	TCNGA	3 cut(s)	191, 343, 379
Hpy188III	TCNNGA	1 cut(s)	490
Hpy99I	CGWCG	3 cut(s)	263, 296, 361
HpyAV	CCTTC	3 cut(s)	333, 411, 454
HpyCH4III	ACNGT	3 cut(s)	39, 458, 578
HpyCH4V	TGCA	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 182, 191, 200, 209
HpyF3I	CTNAG	3 cut(s)	125, 504, 516
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	120, 251, 284
HspAI	GCGC	2 cut(s)	8, 530
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	4 cut(s)	200, 319, 352, 508
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	182
MbiI	CCGCTC	3 cut(s)	62, 194, 511
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	402
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	3 cut(s)	20, 51, 382
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	5 cut(s)	56, 182, 191, 200, 209
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	3 cut(s)	120, 251, 284
NlaIV	GGNNCC	4 cut(s)	122, 321, 354, 480
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	558
PkrI	GCNGC	6 cut(s)	12, 33, 61, 178, 513, 529
Ple19I	CGATCG	1 cut(s)	183
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
PspEI	GGTNACC	1 cut(s)	136
PspN4I	GGNNCC	4 cut(s)	122, 321, 354, 480
PspPI	GGNCC	2 cut(s)	121, 270
PspPPI	RGGWCCY	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	429
PvuI	CGATCG	1 cut(s)	183
RgaI	GCGATCGC	1 cut(s)	183
SatI	GCNGC	6 cut(s)	11, 32, 60, 177, 512, 528
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	121, 270
SchI	GAGTC	1 cut(s)	228
SetI	ASST	3 cut(s)	102, 143, 556
SfaAI	GCGATCGC	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	380
SfcI	CTRYAG	2 cut(s)	430, 457
SgfI	GCGATCGC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	8 cut(s)	31, 60, 103, 177, 194, 198, 350, 511
TaaI	ACNGT	3 cut(s)	39, 458, 578
TaqI	TCGA	5 cut(s)	243, 276, 359, 466, 556
TasI	AATT	1 cut(s)	162
TauI	GCSGC	4 cut(s)	34, 62, 179, 514
TfiI	GAWTC	1 cut(s)	558
TscAI	CASTG	3 cut(s)	241, 372, 434
TseI	GCWGC	2 cut(s)	10, 527
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	3 cut(s)	241, 372, 434
VpaK11BI	GGWCC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.