Rh6CG126900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006665
Physical Location & Seq
Reverse (-)
15168860 .. 15169219
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG126900.1

Sequence Viewer

Length: 360 bp
ATGATTATAACAAAGCAATTGTTCAAATGGTATCCCGGTATCTTTCGCTTTCTGGCTTGCTTTGAACTGTTCAATATTTTGGGCATTTGCGGTGGTGCTACTGGAGGAGGTGCGAGAATAATGGGAACTCTCCTTAGAATGATCACCGTCGGAGGTGGCGCTGTGATTGCGATATTGACTGTTGTTATTGGTGGCCTCAGTTGCCGCCTCCGTACAACGACTTCAATGGCAGCATGGGTCATTACTGGGTCTGTTACTTTGCTAGCTACTGTGCTTATAATTGGGAGAGACGATGTGGGCAGAGTCGTCTTCAGAGCGGGCAGAGCCGTCGTCAGAGCGGGTTTTCAATATATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.7

Weight (kDa)

11.39

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 8, 278
AccBSI CCGCTC 2 cut(s) 317, 338
AciI CCGC 4 cut(s) 90, 205, 317, 338
AcuI CTGAAG 1 cut(s) 295
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 5 cut(s) 25, 65, 73, 225, 347
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 282
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 136
AsuNHI GCTAGC 1 cut(s) 262
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 311
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciVI GTATCC 1 cut(s) 42
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 162
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 2 cut(s) 205, 231
BlsI GCNGC 2 cut(s) 206, 232
Bme1390I CCNGG 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 255
BmtI GCTAGC 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 36
Bse1I ACTGG 2 cut(s) 106, 250
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 2 cut(s) 106, 250
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsnI GGCC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 4 cut(s) 90, 205, 317, 338
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 210
BspOI GCTAGC 1 cut(s) 266
BsrBI CCGCTC 2 cut(s) 317, 338
BsrI ACTGG 2 cut(s) 106, 250
BssMI GATC 1 cut(s) 141
Bst4CI ACNGT 4 cut(s) 69, 148, 181, 271
BstC8I GCNNGC 3 cut(s) 58, 264, 319
BstDEI CTNAG 2 cut(s) 134, 197
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 167, 201, 323
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 301
BsuI GTATCC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 195
Cac8I GCNNGC 3 cut(s) 58, 264, 319
CfoI GCGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 234
CviJI RGCY 4 cut(s) 56, 195, 266, 326
CviKI_1 RGCY 4 cut(s) 56, 195, 266, 326
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 134, 197
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 1 cut(s) 237
FaiI YATR 4 cut(s) 8, 235, 278, 351
FatI CATG 1 cut(s) 233
FauI CCCGC 2 cut(s) 310, 331
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 205, 231
Fsp4HI GCNGC 2 cut(s) 205, 231
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 160
GluI GCNGC 2 cut(s) 205, 231
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 1 cut(s) 195
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 161
Hin1II CATG 1 cut(s) 237
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 1 cut(s) 303
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 152, 314, 335
Hpy99I CGWCG 2 cut(s) 152, 332
HpyCH4III ACNGT 4 cut(s) 69, 148, 181, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 201, 323
HpyF3I CTNAG 2 cut(s) 134, 197
Hsp92II CATG 1 cut(s) 237
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 4 cut(s) 38, 49, 87, 231
Lsp1109I GCAGC 1 cut(s) 242
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 143
MbiI CCGCTC 2 cut(s) 317, 338
MboI GATC 1 cut(s) 141
MboII GAAGA 1 cut(s) 301
MfeI CAATTG 1 cut(s) 17
MluCI AATT 2 cut(s) 17, 279
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 5 cut(s) 98, 101, 146, 206, 218
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 167, 201, 323
NciI CCSGG 1 cut(s) 36
NdeII GATC 1 cut(s) 141
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 1 cut(s) 237
PkrI GCNGC 2 cut(s) 206, 232
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PsiI TTATAA 2 cut(s) 8, 278
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 2 cut(s) 205, 231
Sau3AI GATC 1 cut(s) 141
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 36
SetI ASST 3 cut(s) 112, 157, 268
Sse9I AATT 2 cut(s) 17, 279
SsiI CCGC 4 cut(s) 90, 205, 317, 338
SspI AATATT 1 cut(s) 76
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 4 cut(s) 69, 148, 181, 271
TasI AATT 2 cut(s) 17, 279
TauI GCSGC 1 cut(s) 207
TseI GCWGC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 200
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.