Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006665

Physical Location & Seq

Genomic Coordinates Reverse (-)

5739820 .. 5740420

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGGCAAGAGTATGGATTCGTGTCGGGAGTGGAGCACCGTGTTTGCCTGGTTGATATGCTTGGGCGTTCTGGGCTTCTCAATGAAGCATATCAATTCATCAAGCAGCTTAGTCCCGGAGAGGCAGCTCCACCTCTTTGGACTGCCATGCTTGGGGCTTGCAAGATGCATAAGAATACCGACCTTGGAGTAACAGTTGCTGAGCATCTTTTGGAGATTGAACCAGAAAATCCACGCCATTATGTGATGTTTTCAAACATATATTCATTGGCAGGGTATGCACCAGCACCTGGGTCAGTGATGCATGAAGTAGAAGAAGAAGAAGAGAGGGAATATGCCCTTAGATATCACAGTGAAAAGCTTGCAATCGCATGTGGGCTGATGAAAACCAAGGATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

5.32

Isoelectric Point (pI)

72.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	57 - 92	3.5e-06	E motif
DYW_deaminase	PF14432	92 - 133	5.5e-06	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33760
fragaria_vesca	FvH4_4g05520
malus_domestica	MD10G1295100.v1.1
prunus_persica	Prupe.4G047100_v2.0.a1
pyrus_communis	pycom10g24690
rosa_chinensis	RchiOBHm_Chr5g0008361
rosa_laevigata	RLG00000031504 RLG00000031508 RLG00000031509 RLG00000031512 RLG00000031518 RLG00000031519 RLG00000031564
rosa_multiflora	Rmu_sc0008805.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055520 Rroxscaffold_1G00068130 Rroxscaffold_1G00068520
rosa_rugosa	Rorug04G0435500
rosa_samantha	Rh5AG059900 Rh5AG060000 Rh5AG064000 Rh5BG060900 Rh5CG070900 Rh6CG126900
rosa_wichuraiana	Rw5G005700 Rw5G006030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	153, 290
AgsI	TTSAA	2 cut(s)	221, 255
AjnI	CCWGG	2 cut(s)	48, 289
AluBI	AGCT	3 cut(s)	109, 128, 361
AluI	AGCT	3 cut(s)	109, 128, 361
Alw21I	GWGCWC	1 cut(s)	39
AlwNI	CAGNNNCTG	2 cut(s)	200, 290
ApeKI	GCWGC	2 cut(s)	106, 125
AsuC2I	CCSGG	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	118, 137
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	2 cut(s)	50, 291
BcnI	CCSGG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	107, 126
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	108, 127
Bme1390I	CCNGG	3 cut(s)	50, 117, 291
BmrFI	CCNGG	3 cut(s)	50, 117, 291
BmsI	GCATC	3 cut(s)	156, 214, 291
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	184, 290, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 290
BseBI	CCWGG	2 cut(s)	50, 291
BseDI	CCNNGG	3 cut(s)	184, 290, 390
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	153, 290
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	118, 137
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	153, 290
BsmFI	GGGAC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1720I	GCTNAGC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	184, 290, 390
BssT1I	CCWWGG	2 cut(s)	184, 390
Bst2UI	CCWGG	2 cut(s)	50, 291
Bst4CI	ACNGT	3 cut(s)	41, 196, 353
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	160, 363
BstDEI	CTNAG	3 cut(s)	110, 201, 341
BstF5I	GGATG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 278
BstNI	CCWGG	2 cut(s)	50, 291
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	3 cut(s)	48, 115, 289
BstV1I	GCAGC	2 cut(s)	118, 137
BstXI	CCANNNNNNTGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	303, 358
Cac8I	GCNNGC	2 cut(s)	160, 363
CaiI	CAGNNNCTG	2 cut(s)	200, 290
CviAII	CATG	3 cut(s)	148, 305, 372
CviJI	RGCY	6 cut(s)	76, 109, 128, 158, 361, 379
CviKI_1	RGCY	6 cut(s)	76, 109, 128, 158, 361, 379
DdeI	CTNAG	3 cut(s)	110, 201, 341
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	184, 390
Eco32I	GATATC	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	48, 289
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	184, 390
EcoT22I	ATGCAT	2 cut(s)	171, 306
ErhI	CCWWGG	2 cut(s)	184, 390
FaeI	CATG	3 cut(s)	151, 308, 375
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	3 cut(s)	147, 304, 371
Fnu4HI	GCNGC	2 cut(s)	107, 126
Fsp4HI	GCNGC	2 cut(s)	107, 126
GluI	GCNGC	2 cut(s)	107, 126
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	3 cut(s)	151, 308, 375
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	27
HpyCH4III	ACNGT	3 cut(s)	41, 196, 353
HpyCH4V	TGCA	5 cut(s)	162, 169, 281, 304, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 278
HpyF3I	CTNAG	3 cut(s)	110, 201, 341
Hsp92II	CATG	3 cut(s)	151, 308, 375
LmnI	GCTCC	2 cut(s)	34, 133
LpnPI	CCDG	9 cut(s)	35, 57, 62, 130, 237, 258, 276, 297, 303
Lsp1109I	GCAGC	2 cut(s)	118, 137
LweI	GCATC	3 cut(s)	156, 214, 291
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	4 cut(s)	326, 329, 332, 335
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	95
MnlI	CCTC	3 cut(s)	115, 144, 321
Mph1103I	ATGCAT	2 cut(s)	171, 306
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	3 cut(s)	50, 117, 291
MvaI	CCWGG	2 cut(s)	50, 291
MwoI	GCNNNNNNNGC	2 cut(s)	73, 278
NciI	CCSGG	1 cut(s)	117
NlaIII	CATG	3 cut(s)	151, 308, 375
NsiI	ATGCAT	2 cut(s)	171, 306
NspI	RCATGY	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	108, 127
Psp6I	CCWGG	2 cut(s)	48, 289
PspGI	CCWGG	2 cut(s)	48, 289
PstNI	CAGNNNCTG	2 cut(s)	200, 290
SatI	GCNGC	2 cut(s)	107, 126
ScrFI	CCNGG	3 cut(s)	50, 117, 291
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	111, 130, 136, 186, 292, 363
SfaNI	GCATC	3 cut(s)	156, 214, 291
Sse9I	AATT	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	48, 115, 289
StyI	CCWWGG	2 cut(s)	184, 390
TaaI	ACNGT	3 cut(s)	41, 196, 353
TasI	AATT	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	2 cut(s)	303, 358
TseI	GCWGC	2 cut(s)	106, 125
TspDTI	ATGAA	5 cut(s)	88, 99, 255, 321, 398
TspRI	CASTG	2 cut(s)	303, 358
Van91I	CCANNNNNTGG	1 cut(s)	290
XceI	RCATGY	1 cut(s)	375
Zsp2I	ATGCAT	2 cut(s)	171, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.