Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Forward (+)

36389097 .. 36389698

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCGATGCTTCTGGACGAGATCGTGCAATCACTCGAGCTCTGGTTGAAGCTGATCAGGAAGCCCCAGCCTTACGTCGACCTAAATCTCGACCTGGTTCTACTGGTGTCCGCCATCGCCGGCTCCGTCTTGAACACCGTTGACAAAGAGACTGGTAAAGAGGAGAGGGTTTGGGTAAGGATTCTCAAGGCCGACTACGCGTTTCGGACCAAGTTTGGTCACGTTTCGATCCTTCTACAAGCAATTCGTGTGTGCGGCAGTAATGATGTAGCTCTTAACTTGCATATAGAAAACTCGTTTTCGATTGGAAGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00592 ko01100 ko01110 map00564 map00592 map01100 map01110

Pfam Domains

Protein Families

LCAT

Protein Analysis

106

Amino Acids

11.86

Weight (kDa)

6.72

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	111, 255
AclWI	GGATC	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	49, 133
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	40, 52, 272
AluI	AGCT	3 cut(s)	40, 52, 272
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	108, 157
BseBI	CCWGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	108, 157
BseRI	GAGGAG	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	21, 54, 228
BspACI	CCGC	2 cut(s)	111, 255
BspANI	GGCC	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	108, 157
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	3 cut(s)	21, 54, 228
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	3 cut(s)	24, 57, 231
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	21, 54, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	191
BtgZI	GCGATG	2 cut(s)	20, 100
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	207
CsiI	ACCWGGT	1 cut(s)	93
CviJI	RGCY	7 cut(s)	40, 52, 64, 70, 123, 191, 272
CviKI_1	RGCY	7 cut(s)	40, 52, 64, 70, 123, 191, 272
DpnI	GATC	3 cut(s)	23, 56, 230
DpnII	GATC	3 cut(s)	21, 54, 228
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	42
FaiI	YATR	2 cut(s)	285, 287
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	256
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	120
HincII	GTYRAC	2 cut(s)	79, 142
HindII	GTYRAC	2 cut(s)	79, 142
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	120
Hpy166II	GTNNAC	2 cut(s)	79, 142
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	4 cut(s)	14, 58, 89, 130
Hpy8I	GTNNAC	2 cut(s)	79, 142
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	242, 303
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	75, 222
HpyCH4V	TGCA	2 cut(s)	28, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpySE526I	ACGT	2 cut(s)	75, 222
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	21, 54, 228
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	8 cut(s)	28, 43, 80, 80, 89, 107, 133, 138
MabI	ACCWGGT	1 cut(s)	93
MaeII	ACGT	2 cut(s)	75, 222
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	23, 56, 230
MboI	GATC	3 cut(s)	21, 54, 228
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	243
MluI	ACGCGT	1 cut(s)	198
MnlI	CCTC	2 cut(s)	154, 159
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	1 cut(s)	276
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	197
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	3 cut(s)	21, 54, 228
NgoMIV	GCCGGC	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	207
PspXI	VCTCGAGB	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	3 cut(s)	21, 54, 228
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	7 cut(s)	42, 54, 78, 84, 96, 225, 274
SexAI	ACCWGGT	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	207
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	35, 185
SmoI	CTYRAG	2 cut(s)	35, 185
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	2 cut(s)	111, 255
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	78, 225
TaqI	TCGA	5 cut(s)	36, 78, 90, 227, 302
TasI	AATT	1 cut(s)	243
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.