Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Reverse (-)

54426352 .. 54426928

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG310200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCCAGGGATCAGCTTGCTTGCGCCGAGTTTACAGGTCACTCGGTTGAGTCAGATGGGAACGAGTTGGGTTTCTCAAGCTGTGGTGCTACGAACAAAAGCAATACTTTGTCTCTTGGGTTACTAATGCTAATACTCAGACCTCGAATCGTGAAAAAGGCCATTGTTGCGGTGGACATTGATAGCACTAAGAAAATCTCTGATACTTTTGAGCAGAGGACTTCAGTGGAGTTACTAGACATCGTTGGACGGGTAGATATGAAGCGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

90

Amino Acids

9.83

Weight (kDa)

6.55

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	16, 81
AluI	AGCT	2 cut(s)	16, 81
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	3, 159
AspLEI	GCGC	2 cut(s)	26, 267
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	5, 161
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	5, 161
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	5, 161
BspCNI	CTCAG	1 cut(s)	150
BspPI	GGATC	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDEI	CTNAG	2 cut(s)	137, 189
BstHHI	GCGC	2 cut(s)	26, 267
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BsuRI	GGCC	2 cut(s)	5, 161
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	18, 22
CfoI	GCGC	2 cut(s)	26, 267
CviJI	RGCY	4 cut(s)	5, 16, 81, 161
CviKI_1	RGCY	4 cut(s)	5, 16, 81, 161
DdeI	CTNAG	2 cut(s)	137, 189
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	5
FaiI	YATR	1 cut(s)	260
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	2 cut(s)	25, 266
HaeIII	GGCC	2 cut(s)	5, 161
HhaI	GCGC	2 cut(s)	26, 267
Hin6I	GCGC	2 cut(s)	24, 265
HinP1I	GCGC	2 cut(s)	24, 265
HinfI	GANTC	2 cut(s)	50, 147
Hpy166II	GTNNAC	2 cut(s)	33, 175
Hpy188I	TCNGA	3 cut(s)	55, 140, 202
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	2 cut(s)	33, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	137, 189
HspAI	GCGC	2 cut(s)	24, 265
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	2 cut(s)	19, 21
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	38, 120, 231
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	2 cut(s)	153, 210
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	147
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	7
SetI	ASST	4 cut(s)	18, 40, 83, 145
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	5
TaqI	TCGA	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspRI	CASTG	1 cut(s)	231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.