Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014873

Physical Location & Seq

Genomic Coordinates Forward (+)

12899055 .. 12899397

Gene Structure 343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG084800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCGATGCTTCTGGACGAGATCGTGCAATTGCTGGAGCTCTGGTTGAAGCTGATCAGGAAGCCCCAGCCTTACATTGACCCGAATCTCGACCTGGTTCTGCTGGTGCCCGGCATCGCTGGCTCCGTCTTGAACGTCGTTGACGAAGAGACTGGTAAAGAGGAGAGGGTTTGGGTAAGGATTCTCGAGGCCGACTACGCGTTTCGGACCAAGCTTTGGTCGCGTTTTGATCCTTCTACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00592 ko01100 ko01110 map00564 map00592 map01100 map01110

Pfam Domains

Protein Families

LCAT

Protein Analysis

81

Amino Acids

9.38

Weight (kDa)

4.65

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014873)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000034070
rosa_multiflora	Rmu_sc0003261.1_g000009
rosa_samantha	Rh1AG159600 Rh1AG310200 Rh1CG148800 Rh1CG290700 Rh2CG184400 Rh2DG399800 Rh3DG193200 Rh4DG084800 Rh4DG104200 Rh6AG258900 Rh6BG168900 Rh6BG262300 Rh6DG253200 Rh7AG248400 Rh7CG263900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccII	CGCG	2 cut(s)	200, 223
AclWI	GGATC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	49, 133
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	40, 52, 214
AluI	AGCT	3 cut(s)	40, 52, 214
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	111
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	95, 111
Bme18I	GGWCC	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	108, 124
BmrFI	CCNGG	2 cut(s)	95, 111
BmsI	GCATC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	66
Bsh1236I	CGCG	2 cut(s)	200, 223
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	42, 111
Bsp143I	GATC	3 cut(s)	21, 54, 229
BspANI	GGCC	1 cut(s)	191
BspFNI	CGCG	2 cut(s)	200, 223
BspLI	GGNNCC	2 cut(s)	108, 124
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	21, 54, 229
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	121
BstFNI	CGCG	2 cut(s)	200, 223
BstKTI	GATC	3 cut(s)	24, 57, 232
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	21, 54, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 197, 220
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	93, 109
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	2 cut(s)	200, 223
BsuRI	GGCC	1 cut(s)	191
BtgZI	GCGATG	2 cut(s)	20, 100
Cac8I	GCNNGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	207
CsiI	ACCWGGT	1 cut(s)	93
CviJI	RGCY	7 cut(s)	40, 52, 64, 70, 123, 191, 214
CviKI_1	RGCY	7 cut(s)	40, 52, 64, 70, 123, 191, 214
DpnI	GATC	3 cut(s)	23, 56, 231
DpnII	GATC	3 cut(s)	21, 54, 229
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	85, 181
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	5 cut(s)	14, 58, 89, 130, 185
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 197, 220
HpySE526I	ACGT	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	21, 54, 229
LmnI	GCTCC	2 cut(s)	37, 128
LweI	GCATC	1 cut(s)	123
MabI	ACCWGGT	1 cut(s)	93
MaeII	ACGT	1 cut(s)	135
MalI	GATC	3 cut(s)	23, 56, 231
MboI	GATC	3 cut(s)	21, 54, 229
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	42, 111
MluCI	AATT	1 cut(s)	29
MluI	ACGCGT	1 cut(s)	198
MnlI	CCTC	3 cut(s)	154, 159, 181
MseI	TTAA	1 cut(s)	244
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	95, 111
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	2 cut(s)	200, 223
MwoI	GCNNNNNNNGC	3 cut(s)	120, 197, 220
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	3 cut(s)	21, 54, 229
NlaIV	GGNNCC	2 cut(s)	108, 124
PaeR7I	CTCGAG	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 141
PfeI	GAWTC	2 cut(s)	85, 181
PflMI	CCANNNNNTGG	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	108, 124
PspPI	GGNCC	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	244
Sau3AI	GATC	3 cut(s)	21, 54, 229
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	95, 111
SduI	GDGCHC	2 cut(s)	42, 111
SetI	ASST	5 cut(s)	42, 54, 96, 138, 216
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	207
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	93, 109
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	90, 186
TasI	AATT	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	85, 181
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.